sdk/cwl/tests/chipseq/data/Genomes/*
CITATION.cff
SECURITY.md
-*/testdata/fakestat/*
+lib/crunchstat/testdata/*
lib/controller/localdb/testdata/*.pub
"git.arvados.org/arvados.git/lib/config"
"git.arvados.org/arvados.git/lib/controller"
"git.arvados.org/arvados.git/lib/crunchrun"
+ "git.arvados.org/arvados.git/lib/crunchstat"
"git.arvados.org/arvados.git/lib/dispatchcloud"
"git.arvados.org/arvados.git/lib/install"
"git.arvados.org/arvados.git/lib/lsf"
"config-dump": config.DumpCommand,
"controller": controller.Command,
"crunch-run": crunchrun.Command,
+ "crunchstat": crunchstat.Command,
"dispatch-cloud": dispatchcloud.Command,
"dispatch-lsf": lsf.DispatchCommand,
"dispatch-slurm": dispatchslurm.Command,
package crunchrun
import (
+ "fmt"
+ "os/exec"
+
. "gopkg.in/check.v1"
)
var _ = Suite(&CgroupSuite{})
func (s *CgroupSuite) TestFindCgroup(c *C) {
+ if buf, err := exec.Command("stat", "-ftc", "%T", "/sys/fs/cgroup").CombinedOutput(); err != nil {
+ c.Skip(fmt.Sprintf("cannot stat /sys/fs/cgroup: %s", err))
+ } else if string(buf) == "cgroup2fs\n" {
+ c.Skip("cannot test cgroups v1 feature because this system is using cgroups v2 unified mode")
+ }
for _, s := range []string{"devices", "cpu", "cpuset"} {
g, err := findCgroup(s)
if c.Check(err, IsNil) {
"flag"
"fmt"
"io"
+ "io/fs"
"io/ioutil"
"log"
"net"
hoststatLogger io.WriteCloser
hoststatReporter *crunchstat.Reporter
statInterval time.Duration
- cgroupRoot string
- // What we expect the container's cgroup parent to be.
- expectCgroupParent string
// What we tell docker to use as the container's cgroup
- // parent. Note: Ideally we would use the same field for both
- // expectCgroupParent and setCgroupParent, and just make it
- // default to "docker". However, when using docker < 1.10 with
- // systemd, specifying a non-empty cgroup parent (even the
- // default value "docker") hits a docker bug
- // (https://github.com/docker/docker/issues/17126). Using two
- // separate fields makes it possible to use the "expect cgroup
- // parent to be X" feature even on sites where the "specify
- // cgroup parent" feature breaks.
+ // parent.
setCgroupParent string
+ // Fake root dir where crunchstat.Reporter should read OS
+ // files, for testing.
+ crunchstatFakeFS fs.FS
cStateLock sync.Mutex
cCancelled bool // StopContainer() invoked
runner.hoststatLogger = NewThrottledLogger(w)
runner.hoststatReporter = &crunchstat.Reporter{
Logger: log.New(runner.hoststatLogger, "", 0),
- CgroupRoot: runner.cgroupRoot,
+ Pid: func() int { return 1 },
PollPeriod: runner.statInterval,
}
runner.hoststatReporter.Start()
}
runner.statLogger = NewThrottledLogger(w)
runner.statReporter = &crunchstat.Reporter{
- CgroupParent: runner.expectCgroupParent,
- CgroupRoot: runner.cgroupRoot,
- CID: runner.executor.CgroupID(),
- Logger: log.New(runner.statLogger, "", 0),
+ Pid: runner.executor.Pid,
+ FS: runner.crunchstatFakeFS,
+ Logger: log.New(runner.statLogger, "", 0),
MemThresholds: map[string][]crunchstat.Threshold{
"rss": crunchstat.NewThresholdsFromPercentages(runner.Container.RuntimeConstraints.RAM, []int64{90, 95, 99}),
},
log := log.New(stderr, "", 0)
flags := flag.NewFlagSet(prog, flag.ContinueOnError)
statInterval := flags.Duration("crunchstat-interval", 10*time.Second, "sampling period for periodic resource usage reporting")
- cgroupRoot := flags.String("cgroup-root", "/sys/fs/cgroup", "path to sysfs cgroup tree")
- cgroupParent := flags.String("cgroup-parent", "docker", "name of container's parent cgroup (ignored if -cgroup-parent-subsystem is used)")
- cgroupParentSubsystem := flags.String("cgroup-parent-subsystem", "", "use current cgroup for given subsystem as parent cgroup for container")
+ flags.String("cgroup-root", "/sys/fs/cgroup", "path to sysfs cgroup tree (obsolete, ignored)")
+ flags.String("cgroup-parent", "docker", "name of container's parent cgroup (obsolete, ignored)")
+ cgroupParentSubsystem := flags.String("cgroup-parent-subsystem", "", "use current cgroup for given subsystem as parent cgroup for container (cgroups v1 only)")
caCertsPath := flags.String("ca-certs", "", "Path to TLS root certificates")
detach := flags.Bool("detach", false, "Detach from parent process and run in the background")
stdinConfig := flags.Bool("stdin-config", false, "Load config and environment variables from JSON message on stdin")
cr.parentTemp = parentTemp
cr.statInterval = *statInterval
- cr.cgroupRoot = *cgroupRoot
- cr.expectCgroupParent = *cgroupParent
cr.enableMemoryLimit = *enableMemoryLimit
cr.enableNetwork = *enableNetwork
cr.networkMode = *networkMode
return 1
}
cr.setCgroupParent = p
- cr.expectCgroupParent = p
}
if conf.EC2SpotCheck {
"path"
"regexp"
"runtime/pprof"
- "strconv"
"strings"
"sync"
"sync/atomic"
keepmountTmp []string
testDispatcherKeepClient KeepTestClient
testContainerKeepClient KeepTestClient
+ debian12MemoryCurrent int64
+ debian12SwapCurrent int64
+}
+
+func (s *TestSuite) SetUpSuite(c *C) {
+ buf, err := os.ReadFile("../crunchstat/testdata/debian12/sys/fs/cgroup/user.slice/user-1000.slice/session-4.scope/memory.current")
+ c.Assert(err, IsNil)
+ _, err = fmt.Sscanf(string(buf), "%d", &s.debian12MemoryCurrent)
+ c.Assert(err, IsNil)
+
+ buf, err = os.ReadFile("../crunchstat/testdata/debian12/sys/fs/cgroup/user.slice/user-1000.slice/session-4.scope/memory.swap.current")
+ c.Assert(err, IsNil)
+ _, err = fmt.Sscanf(string(buf), "%d", &s.debian12SwapCurrent)
+ c.Assert(err, IsNil)
}
func (s *TestSuite) SetUpTest(c *C) {
go func() { e.exit <- e.runFunc() }()
return e.startErr
}
-func (e *stubExecutor) CgroupID() string { return "cgroupid" }
-func (e *stubExecutor) Stop() error { e.stopped = true; go func() { e.exit <- -1 }(); return e.stopErr }
-func (e *stubExecutor) Close() { e.closed = true }
+func (e *stubExecutor) Pid() int { return 1115883 } // matches pid in ../crunchstat/testdata/debian12/proc/
+func (e *stubExecutor) Stop() error { e.stopped = true; go func() { e.exit <- -1 }(); return e.stopErr }
+func (e *stubExecutor) Close() { e.closed = true }
func (e *stubExecutor) Wait(context.Context) (int, error) {
return <-e.exit, e.waitErr
}
}
func (s *TestSuite) TestCrunchstat(c *C) {
+ s.runner.crunchstatFakeFS = os.DirFS("../crunchstat/testdata/debian12")
s.fullRunHelper(c, `{
"command": ["sleep", "1"],
"container_image": "`+arvadostest.DockerImage112PDH+`",
c.Check(s.api.CalledWith("container.exit_code", 0), NotNil)
c.Check(s.api.CalledWith("container.state", "Complete"), NotNil)
- // We didn't actually start a container, so crunchstat didn't
- // find accounting files and therefore didn't log any stats.
- // It should have logged a "can't find accounting files"
- // message after one poll interval, though, so we can confirm
- // it's alive:
c.Assert(s.api.Logs["crunchstat"], NotNil)
- c.Check(s.api.Logs["crunchstat"].String(), Matches, `(?ms).*cgroup stats files have not appeared after 100ms.*`)
+ c.Check(s.api.Logs["crunchstat"].String(), Matches, `(?ms).*mem \d+ swap \d+ pgmajfault \d+ rss.*`)
- // The "files never appeared" log assures us that we called
- // (*crunchstat.Reporter)Stop(), and that we set it up with
- // the correct container ID "abcde":
- c.Check(s.api.Logs["crunchstat"].String(), Matches, `(?ms).*cgroup stats files never appeared for cgroupid\n`)
+ // Check that we called (*crunchstat.Reporter)Stop().
+ c.Check(s.api.Logs["crunch-run"].String(), Matches, `(?ms).*Maximum crunch-run memory rss usage was \d+ bytes\n.*`)
}
func (s *TestSuite) TestNodeInfoLog(c *C) {
c.Check(s.api.Logs["crunch-run"].String(), Matches, `(?ms).*Using container runtime: stub.*`)
}
-func (s *TestSuite) testLogRSSThresholds(c *C, ram int, expected []int, notExpected int) {
- s.runner.cgroupRoot = "testdata/fakestat"
+func (s *TestSuite) testLogRSSThresholds(c *C, ram int64, expected []int, notExpected int) {
+ s.runner.crunchstatFakeFS = os.DirFS("../crunchstat/testdata/debian12")
s.fullRunHelper(c, `{
"command": ["true"],
"container_image": "`+arvadostest.DockerImage112PDH+`",
"mounts": {"/tmp": {"kind": "tmp"} },
"output_path": "/tmp",
"priority": 1,
- "runtime_constraints": {"ram": `+strconv.Itoa(ram)+`},
+ "runtime_constraints": {"ram": `+fmt.Sprintf("%d", ram)+`},
"state": "Locked"
}`, nil, func() int { return 0 })
+ c.Logf("=== crunchstat logs\n%s\n", s.api.Logs["crunchstat"].String())
logs := s.api.Logs["crunch-run"].String()
- pattern := logLineStart + `Container using over %d%% of memory \(rss 734003200/%d bytes\)`
+ pattern := logLineStart + `Container using over %d%% of memory \(rss %d/%d bytes\)`
var threshold int
for _, threshold = range expected {
- c.Check(logs, Matches, fmt.Sprintf(pattern, threshold, ram))
+ c.Check(logs, Matches, fmt.Sprintf(pattern, threshold, s.debian12MemoryCurrent, ram))
}
if notExpected > threshold {
- c.Check(logs, Not(Matches), fmt.Sprintf(pattern, notExpected, ram))
+ c.Check(logs, Not(Matches), fmt.Sprintf(pattern, notExpected, s.debian12MemoryCurrent, ram))
}
}
func (s *TestSuite) TestLogNoRSSThresholds(c *C) {
- s.testLogRSSThresholds(c, 7340032000, []int{}, 90)
+ s.testLogRSSThresholds(c, s.debian12MemoryCurrent*10, []int{}, 90)
}
func (s *TestSuite) TestLogSomeRSSThresholds(c *C) {
- onePercentRSS := 7340032
+ onePercentRSS := s.debian12MemoryCurrent / 100
s.testLogRSSThresholds(c, 102*onePercentRSS, []int{90, 95}, 99)
}
func (s *TestSuite) TestLogAllRSSThresholds(c *C) {
- s.testLogRSSThresholds(c, 734003299, []int{90, 95, 99}, 0)
+ s.testLogRSSThresholds(c, s.debian12MemoryCurrent, []int{90, 95, 99}, 0)
}
func (s *TestSuite) TestLogMaximaAfterRun(c *C) {
- s.runner.cgroupRoot = "testdata/fakestat"
+ s.runner.crunchstatFakeFS = os.DirFS("../crunchstat/testdata/debian12")
s.runner.parentTemp = c.MkDir()
s.fullRunHelper(c, `{
"command": ["true"],
"mounts": {"/tmp": {"kind": "tmp"} },
"output_path": "/tmp",
"priority": 1,
- "runtime_constraints": {"ram": 7340032000},
+ "runtime_constraints": {"ram": `+fmt.Sprintf("%d", s.debian12MemoryCurrent*10)+`},
"state": "Locked"
}`, nil, func() int { return 0 })
logs := s.api.Logs["crunch-run"].String()
for _, expected := range []string{
`Maximum disk usage was \d+%, \d+/\d+ bytes`,
- `Maximum container memory cache usage was 73400320 bytes`,
- `Maximum container memory swap usage was 320 bytes`,
- `Maximum container memory pgmajfault usage was 20 faults`,
- `Maximum container memory rss usage was 10%, 734003200/7340032000 bytes`,
+ fmt.Sprintf(`Maximum container memory swap usage was %d bytes`, s.debian12SwapCurrent),
+ `Maximum container memory pgmajfault usage was \d+ faults`,
+ fmt.Sprintf(`Maximum container memory rss usage was 10%%, %d/%d bytes`, s.debian12MemoryCurrent, s.debian12MemoryCurrent*10),
`Maximum crunch-run memory rss usage was \d+ bytes`,
} {
c.Check(logs, Matches, logLineStart+expected)
return e.startIO(spec.Stdin, spec.Stdout, spec.Stderr)
}
-func (e *dockerExecutor) CgroupID() string {
- return e.containerID
+func (e *dockerExecutor) Pid() int {
+ ctx, cancel := context.WithDeadline(context.Background(), time.Now().Add(10*time.Second))
+ defer cancel()
+ ctr, err := e.dockerclient.ContainerInspect(ctx, e.containerID)
+ if err != nil && ctr.State != nil {
+ return ctr.State.Pid
+ } else {
+ return -1
+ }
}
func (e *dockerExecutor) Start() error {
// Start the container
Start() error
- // CID the container will belong to
- CgroupID() string
+ // Process ID of a process in the container (return 0 or
+ // negative if container is finished or no process has started
+ // yet)
+ Pid() int
// Stop the container immediately
Stop() error
return nil
}
-func (e *singularityExecutor) CgroupID() string {
- return ""
+func (e *singularityExecutor) Pid() int {
+ pid, err := e.containedProcess()
+ if err != nil {
+ return -1
+ }
+ return pid
}
func (e *singularityExecutor) Stop() error {
--- /dev/null
+// Copyright (C) The Arvados Authors. All rights reserved.
+//
+// SPDX-License-Identifier: AGPL-3.0
+
+package crunchstat
+
+import (
+ "flag"
+ "fmt"
+ "io"
+ "log"
+ "os/exec"
+ "syscall"
+ "time"
+
+ "git.arvados.org/arvados.git/lib/cmd"
+)
+
+var Command = command{}
+
+type command struct{}
+
+func (command) RunCommand(prog string, args []string, stdin io.Reader, stdout, stderr io.Writer) int {
+ flags := flag.NewFlagSet(prog, flag.ExitOnError)
+ poll := flags.Duration("poll", 10*time.Second, "reporting interval")
+ debug := flags.Bool("debug", false, "show additional debug info")
+ dump := flags.String("dump", "", "save snapshot of OS files in given `directory` (for creating test cases)")
+ getVersion := flags.Bool("version", false, "print version information and exit")
+
+ if ok, code := cmd.ParseFlags(flags, prog, args, "program [args ...]", stderr); !ok {
+ return code
+ } else if *getVersion {
+ fmt.Printf("%s %s\n", prog, cmd.Version.String())
+ return 0
+ } else if flags.NArg() == 0 {
+ fmt.Fprintf(stderr, "missing required argument: program (try -help)\n")
+ return 2
+ }
+
+ reporter := &Reporter{
+ Logger: log.New(stderr, prog+": ", 0),
+ Debug: *debug,
+ PollPeriod: *poll,
+ }
+ reporter.Logger.Printf("%s %s", prog, cmd.Version.String())
+ reporter.Logger.Printf("running %v", flags.Args())
+ cmd := exec.Command(flags.Arg(0), flags.Args()[1:]...)
+
+ // Child process will use our stdin and stdout pipes (we close
+ // our copies below)
+ cmd.Stdin = stdin
+ cmd.Stdout = stdout
+ // Child process stderr and our stats will both go to stderr
+ cmd.Stderr = stderr
+
+ if err := cmd.Start(); err != nil {
+ reporter.Logger.Printf("error in cmd.Start: %v", err)
+ return 1
+ }
+ reporter.Pid = func() int {
+ return cmd.Process.Pid
+ }
+ reporter.Start()
+ defer reporter.Stop()
+ if stdin, ok := stdin.(io.Closer); ok {
+ stdin.Close()
+ }
+ if stdout, ok := stdout.(io.Closer); ok {
+ stdout.Close()
+ }
+
+ failed := false
+ if *dump != "" {
+ err := reporter.dumpSourceFiles(*dump)
+ if err != nil {
+ fmt.Fprintf(stderr, "error dumping source files: %s\n", err)
+ failed = true
+ }
+ }
+
+ err := cmd.Wait()
+
+ if err, ok := err.(*exec.ExitError); ok {
+ // The program has exited with an exit code != 0
+
+ // This works on both Unix and Windows. Although
+ // package syscall is generally platform dependent,
+ // WaitStatus is defined for both Unix and Windows and
+ // in both cases has an ExitStatus() method with the
+ // same signature.
+ if status, ok := err.Sys().(syscall.WaitStatus); ok {
+ return status.ExitStatus()
+ } else {
+ reporter.Logger.Printf("ExitError without WaitStatus: %v", err)
+ return 1
+ }
+ } else if err != nil {
+ reporter.Logger.Printf("error running command: %v", err)
+ return 1
+ }
+
+ if failed {
+ return 1
+ }
+ return 0
+}
"errors"
"fmt"
"io"
+ "io/fs"
"io/ioutil"
"os"
+ "path/filepath"
"regexp"
"sort"
"strconv"
// A Reporter gathers statistics for a cgroup and writes them to a
// log.Logger.
type Reporter struct {
- // CID of the container to monitor. If empty, read the CID
- // from CIDFile (first waiting until a non-empty file appears
- // at CIDFile). If CIDFile is also empty, report host
- // statistics.
- CID string
-
- // Path to a file we can read CID from.
- CIDFile string
-
- // Where cgroup accounting files live on this system, e.g.,
- // "/sys/fs/cgroup".
- CgroupRoot string
-
- // Parent cgroup, e.g., "docker".
- CgroupParent string
+ // Func that returns the pid of a process inside the desired
+ // cgroup. Reporter will call Pid periodically until it
+ // returns a positive number, then start reporting stats for
+ // the cgroup that process belongs to.
+ //
+ // Pid is used when cgroups v2 is available. For cgroups v1,
+ // see below.
+ Pid func() int
// Interval between samples. Must be positive.
PollPeriod time.Duration
- // Temporary directory, will be monitored for available, used & total space.
+ // Temporary directory, will be monitored for available, used
+ // & total space.
TempDir string
// Where to write statistics. Must not be nil.
// When the corresponding stat exceeds a threshold, that will be logged.
MemThresholds map[string][]Threshold
+ // Filesystem to read /proc entries and cgroup stats from.
+ // Non-nil for testing, nil for real root filesystem.
+ FS fs.FS
+
+ // Enable debug messages.
+ Debug bool
+
+ // available cgroup hierarchies
+ statFiles struct {
+ cpusetCpus string // v1,v2 (via /proc/$PID/cpuset)
+ cpuacctStat string // v1 (via /proc/$PID/cgroup => cpuacct)
+ cpuStat string // v2
+ ioServiceBytes string // v1 (via /proc/$PID/cgroup => blkio)
+ ioStat string // v2
+ memoryStat string // v1 and v2 (but v2 is missing some entries)
+ memoryCurrent string // v2
+ memorySwapCurrent string // v2
+ netDev string // /proc/$PID/net/dev
+ }
+
kernelPageSize int64
- reportedStatFile map[string]string
lastNetSample map[string]ioSample
lastDiskIOSample map[string]ioSample
lastCPUSample cpuSample
maxDiskSpaceSample diskSpaceSample
maxMemSample map[memoryKey]int64
+ // process returned by Pid(), whose cgroup stats we are
+ // reporting
+ pid int
+
+ // individual processes whose memory size we are reporting
reportPIDs map[string]int
reportPIDsMu sync.Mutex
done chan struct{} // closed when we should stop reporting
+ ready chan struct{} // have pid and stat files
flushed chan struct{} // closed when we have made our last report
}
// Callers should not modify public data fields after calling Start.
func (r *Reporter) Start() {
r.done = make(chan struct{})
+ r.ready = make(chan struct{})
r.flushed = make(chan struct{})
+ if r.FS == nil {
+ r.FS = os.DirFS("/")
+ }
go r.run()
}
<-r.flushed
}
+var v1keys = map[string]bool{
+ "blkio": true,
+ "cpuacct": true,
+ "cpuset": true,
+ "memory": true,
+}
+
+// Find cgroup hierarchies in /proc/mounts, e.g.,
+//
+// {
+// "blkio": "/sys/fs/cgroup/blkio",
+// "unified": "/sys/fs/cgroup/unified",
+// }
+func (r *Reporter) cgroupMounts() map[string]string {
+ procmounts, err := fs.ReadFile(r.FS, "proc/mounts")
+ if err != nil {
+ r.Logger.Printf("error reading /proc/mounts: %s", err)
+ return nil
+ }
+ mounts := map[string]string{}
+ for _, line := range bytes.Split(procmounts, []byte{'\n'}) {
+ fields := bytes.SplitN(line, []byte{' '}, 6)
+ if len(fields) != 6 {
+ continue
+ }
+ switch string(fields[2]) {
+ case "cgroup2":
+ // cgroup /sys/fs/cgroup/unified cgroup2 rw,nosuid,nodev,noexec,relatime 0 0
+ mounts["unified"] = string(fields[1])
+ case "cgroup":
+ // cgroup /sys/fs/cgroup/blkio cgroup rw,nosuid,nodev,noexec,relatime,blkio 0 0
+ options := bytes.Split(fields[3], []byte{','})
+ for _, option := range options {
+ option := string(option)
+ if v1keys[option] {
+ mounts[option] = string(fields[1])
+ break
+ }
+ }
+ }
+ }
+ return mounts
+}
+
+// generate map of cgroup controller => path for r.pid.
+//
+// the "unified" controller represents cgroups v2.
+func (r *Reporter) cgroupPaths(mounts map[string]string) map[string]string {
+ if len(mounts) == 0 {
+ return nil
+ }
+ procdir := fmt.Sprintf("proc/%d", r.pid)
+ buf, err := fs.ReadFile(r.FS, procdir+"/cgroup")
+ if err != nil {
+ r.Logger.Printf("error reading cgroup file: %s", err)
+ return nil
+ }
+ paths := map[string]string{}
+ for _, line := range bytes.Split(buf, []byte{'\n'}) {
+ // The entry for cgroup v2 is always in the format
+ // "0::$PATH" --
+ // https://docs.kernel.org/admin-guide/cgroup-v2.html
+ if bytes.HasPrefix(line, []byte("0::/")) && mounts["unified"] != "" {
+ paths["unified"] = mounts["unified"] + string(line[3:])
+ continue
+ }
+ // cgroups v1 entries look like
+ // "6:cpu,cpuacct:/user.slice"
+ fields := bytes.SplitN(line, []byte{':'}, 3)
+ if len(fields) != 3 {
+ continue
+ }
+ for _, key := range bytes.Split(fields[1], []byte{','}) {
+ key := string(key)
+ if mounts[key] != "" {
+ paths[key] = mounts[key] + string(fields[2])
+ }
+ }
+ }
+ // In unified mode, /proc/$PID/cgroup doesn't have a cpuset
+ // entry, but we still need it -- there's no cpuset.cpus file
+ // in the cgroup2 subtree indicated by the 0::$PATH entry. We
+ // have to get the right path from /proc/$PID/cpuset.
+ if _, found := paths["cpuset"]; !found && mounts["unified"] != "" {
+ buf, _ := fs.ReadFile(r.FS, procdir+"/cpuset")
+ cpusetPath := string(bytes.TrimRight(buf, "\n"))
+ paths["cpuset"] = mounts["unified"] + cpusetPath
+ }
+ return paths
+}
+
+func (r *Reporter) findStatFiles() {
+ mounts := r.cgroupMounts()
+ paths := r.cgroupPaths(mounts)
+ done := map[*string]bool{}
+ for _, try := range []struct {
+ statFile *string
+ pathkey string
+ file string
+ }{
+ {&r.statFiles.cpusetCpus, "cpuset", "cpuset.cpus.effective"},
+ {&r.statFiles.cpusetCpus, "cpuset", "cpuset.cpus"},
+ {&r.statFiles.cpuacctStat, "cpuacct", "cpuacct.stat"},
+ {&r.statFiles.cpuStat, "unified", "cpu.stat"},
+ // blkio.throttle.io_service_bytes must precede
+ // blkio.io_service_bytes -- on ubuntu1804, the latter
+ // is present but reports 0
+ {&r.statFiles.ioServiceBytes, "blkio", "blkio.throttle.io_service_bytes"},
+ {&r.statFiles.ioServiceBytes, "blkio", "blkio.io_service_bytes"},
+ {&r.statFiles.ioStat, "unified", "io.stat"},
+ {&r.statFiles.memoryStat, "unified", "memory.stat"},
+ {&r.statFiles.memoryStat, "memory", "memory.stat"},
+ {&r.statFiles.memoryCurrent, "unified", "memory.current"},
+ {&r.statFiles.memorySwapCurrent, "unified", "memory.swap.current"},
+ } {
+ startpath, ok := paths[try.pathkey]
+ if !ok || done[try.statFile] {
+ continue
+ }
+ // /proc/$PID/cgroup says cgroup path is
+ // /exa/mple/exa/mple, however, sometimes the file we
+ // need is not under that path, it's only available in
+ // a parent cgroup's dir. So we start at
+ // /sys/fs/cgroup/unified/exa/mple/exa/mple/ and walk
+ // up to /sys/fs/cgroup/unified/ until we find the
+ // desired file.
+ //
+ // This might mean our reported stats include more
+ // cgroups in the cgroup tree, but it's the best we
+ // can do.
+ for path := startpath; path != "" && path != "/" && (path == startpath || strings.HasPrefix(path, mounts[try.pathkey])); path, _ = filepath.Split(strings.TrimRight(path, "/")) {
+ target := strings.TrimLeft(filepath.Join(path, try.file), "/")
+ buf, err := fs.ReadFile(r.FS, target)
+ if err != nil || len(buf) == 0 || bytes.Equal(buf, []byte{'\n'}) {
+ if r.Debug {
+ if os.IsNotExist(err) {
+ // don't stutter
+ err = os.ErrNotExist
+ }
+ r.Logger.Printf("skip /%s: %s", target, err)
+ }
+ continue
+ }
+ *try.statFile = target
+ done[try.statFile] = true
+ r.Logger.Printf("using /%s", target)
+ break
+ }
+ }
+
+ netdev := fmt.Sprintf("proc/%d/net/dev", r.pid)
+ if buf, err := fs.ReadFile(r.FS, netdev); err == nil && len(buf) > 0 {
+ r.statFiles.netDev = netdev
+ r.Logger.Printf("using /%s", netdev)
+ }
+}
+
func (r *Reporter) reportMemoryMax(logger logPrinter, source, statName string, value, limit int64) {
var units string
switch statName {
return content, err
}
-// Open the cgroup stats file in /sys/fs corresponding to the target
-// cgroup, and return an io.ReadCloser. If no stats file is available,
-// return nil.
-//
-// Log the file that was opened, if it isn't the same file opened on
-// the last openStatFile for this stat.
-//
-// Log "not available" if no file is found and either this stat has
-// been available in the past, or verbose==true.
-//
-// TODO: Instead of trying all options, choose a process in the
-// container, and read /proc/PID/cgroup to determine the appropriate
-// cgroup root for the given statgroup. (This will avoid falling back
-// to host-level stats during container setup and teardown.)
-func (r *Reporter) openStatFile(statgroup, stat string, verbose bool) (io.ReadCloser, error) {
- var paths []string
- if r.CID != "" {
- // Collect container's stats
- paths = []string{
- fmt.Sprintf("%s/%s/%s/%s/%s", r.CgroupRoot, statgroup, r.CgroupParent, r.CID, stat),
- fmt.Sprintf("%s/%s/%s/%s", r.CgroupRoot, r.CgroupParent, r.CID, stat),
- }
- } else {
- // Collect this host's stats
- paths = []string{
- fmt.Sprintf("%s/%s/%s", r.CgroupRoot, statgroup, stat),
- fmt.Sprintf("%s/%s", r.CgroupRoot, stat),
- }
- }
- var path string
- var file *os.File
- var err error
- for _, path = range paths {
- file, err = os.Open(path)
- if err == nil {
- break
- } else {
- path = ""
- }
- }
- if pathWas := r.reportedStatFile[stat]; pathWas != path {
- // Log whenever we start using a new/different cgroup
- // stat file for a given statistic. This typically
- // happens 1 to 3 times per statistic, depending on
- // whether we happen to collect stats [a] before any
- // processes have been created in the container and
- // [b] after all contained processes have exited.
- if path == "" && verbose {
- r.Logger.Printf("notice: stats not available: stat %s, statgroup %s, cid %s, parent %s, root %s\n", stat, statgroup, r.CID, r.CgroupParent, r.CgroupRoot)
- } else if pathWas != "" {
- r.Logger.Printf("notice: stats moved from %s to %s\n", r.reportedStatFile[stat], path)
- } else {
- r.Logger.Printf("notice: reading stats from %s\n", path)
- }
- r.reportedStatFile[stat] = path
- }
- return file, err
-}
-
-func (r *Reporter) getContainerNetStats() (io.Reader, error) {
- procsFile, err := r.openStatFile("cpuacct", "cgroup.procs", true)
- if err != nil {
- return nil, err
- }
- defer procsFile.Close()
- reader := bufio.NewScanner(procsFile)
- for reader.Scan() {
- taskPid := reader.Text()
- statsFilename := fmt.Sprintf("/proc/%s/net/dev", taskPid)
- stats, err := ioutil.ReadFile(statsFilename)
- if err != nil {
- r.Logger.Printf("notice: %v", err)
- continue
- }
- return strings.NewReader(string(stats)), nil
- }
- return nil, errors.New("Could not read stats for any proc in container")
-}
-
type ioSample struct {
sampleTime time.Time
txBytes int64
}
func (r *Reporter) doBlkIOStats() {
- c, err := r.openStatFile("blkio", "blkio.io_service_bytes", true)
- if err != nil {
- return
- }
- defer c.Close()
- b := bufio.NewScanner(c)
var sampleTime = time.Now()
newSamples := make(map[string]ioSample)
- for b.Scan() {
- var device, op string
- var val int64
- if _, err := fmt.Sscanf(string(b.Text()), "%s %s %d", &device, &op, &val); err != nil {
- continue
+
+ if r.statFiles.ioStat != "" {
+ statfile, err := fs.ReadFile(r.FS, r.statFiles.ioStat)
+ if err != nil {
+ return
}
- var thisSample ioSample
- var ok bool
- if thisSample, ok = newSamples[device]; !ok {
- thisSample = ioSample{sampleTime, -1, -1}
+ for _, line := range bytes.Split(statfile, []byte{'\n'}) {
+ // 254:16 rbytes=72163328 wbytes=117370880 rios=3811 wios=3906 dbytes=0 dios=0
+ words := bytes.Split(line, []byte{' '})
+ if len(words) < 2 {
+ continue
+ }
+ thisSample := ioSample{sampleTime, -1, -1}
+ for _, kv := range words[1:] {
+ if bytes.HasPrefix(kv, []byte("rbytes=")) {
+ fmt.Sscanf(string(kv[7:]), "%d", &thisSample.rxBytes)
+ } else if bytes.HasPrefix(kv, []byte("wbytes=")) {
+ fmt.Sscanf(string(kv[7:]), "%d", &thisSample.txBytes)
+ }
+ }
+ if thisSample.rxBytes >= 0 && thisSample.txBytes >= 0 {
+ newSamples[string(words[0])] = thisSample
+ }
+ }
+ } else if r.statFiles.ioServiceBytes != "" {
+ statfile, err := fs.ReadFile(r.FS, r.statFiles.ioServiceBytes)
+ if err != nil {
+ return
}
- switch op {
- case "Read":
- thisSample.rxBytes = val
- case "Write":
- thisSample.txBytes = val
+ for _, line := range bytes.Split(statfile, []byte{'\n'}) {
+ var device, op string
+ var val int64
+ if _, err := fmt.Sscanf(string(line), "%s %s %d", &device, &op, &val); err != nil {
+ continue
+ }
+ var thisSample ioSample
+ var ok bool
+ if thisSample, ok = newSamples[device]; !ok {
+ thisSample = ioSample{sampleTime, -1, -1}
+ }
+ switch op {
+ case "Read":
+ thisSample.rxBytes = val
+ case "Write":
+ thisSample.txBytes = val
+ }
+ newSamples[device] = thisSample
}
- newSamples[device] = thisSample
}
+
for dev, sample := range newSamples {
if sample.txBytes < 0 || sample.rxBytes < 0 {
continue
}
func (r *Reporter) getMemSample() {
- c, err := r.openStatFile("memory", "memory.stat", true)
+ thisSample := memSample{time.Now(), make(map[string]int64)}
+
+ // memory.stat contains "pgmajfault" in cgroups v1 and v2. It
+ // also contains "rss", "swap", and "cache" in cgroups v1.
+ c, err := r.FS.Open(r.statFiles.memoryStat)
if err != nil {
return
}
defer c.Close()
b := bufio.NewScanner(c)
- thisSample := memSample{time.Now(), make(map[string]int64)}
for b.Scan() {
var stat string
var val int64
continue
}
thisSample.memStat[stat] = val
+ }
+
+ // In cgroups v2, we need to read "memory.current" and
+ // "memory.swap.current" as well.
+ for stat, fnm := range map[string]string{
+ // memory.current includes cache. We don't get
+ // separate rss/cache values, so we call
+ // memory usage "rss" for compatibility, and
+ // omit "cache".
+ "rss": r.statFiles.memoryCurrent,
+ "swap": r.statFiles.memorySwapCurrent,
+ } {
+ if fnm == "" {
+ continue
+ }
+ buf, err := fs.ReadFile(r.FS, fnm)
+ if err != nil {
+ continue
+ }
+ var val int64
+ _, err = fmt.Sscanf(string(buf), "%d", &val)
+ if err != nil {
+ continue
+ }
+ thisSample.memStat[stat] = val
+ }
+ for stat, val := range thisSample.memStat {
maxKey := memoryKey{statName: stat}
if val > r.maxMemSample[maxKey] {
r.maxMemSample[maxKey] = val
// assign "don't try again" value in case we give up
// and return without assigning the real value
r.kernelPageSize = -1
- buf, err := os.ReadFile("/proc/self/smaps")
+ buf, err := fs.ReadFile(r.FS, "proc/self/smaps")
if err != nil {
r.Logger.Printf("error reading /proc/self/smaps: %s", err)
return
procmem := ""
for _, procname := range procnames {
pid := r.reportPIDs[procname]
- buf, err := os.ReadFile(fmt.Sprintf("/proc/%d/stat", pid))
+ buf, err := fs.ReadFile(r.FS, fmt.Sprintf("proc/%d/stat", pid))
if err != nil {
continue
}
}
func (r *Reporter) doNetworkStats() {
+ if r.statFiles.netDev == "" {
+ return
+ }
sampleTime := time.Now()
- stats, err := r.getContainerNetStats()
+ stats, err := r.FS.Open(r.statFiles.netDev)
if err != nil {
return
}
-
+ defer stats.Close()
scanner := bufio.NewScanner(stats)
for scanner.Scan() {
var ifName string
// Return the number of CPUs available in the container. Return 0 if
// we can't figure out the real number of CPUs.
func (r *Reporter) getCPUCount() int64 {
- cpusetFile, err := r.openStatFile("cpuset", "cpuset.cpus", true)
+ buf, err := fs.ReadFile(r.FS, r.statFiles.cpusetCpus)
if err != nil {
return 0
}
- defer cpusetFile.Close()
- b, err := r.readAllOrWarn(cpusetFile)
- if err != nil {
- return 0
- }
- sp := strings.Split(string(b), ",")
cpus := int64(0)
- for _, v := range sp {
+ for _, v := range bytes.Split(buf, []byte{','}) {
var min, max int64
- n, _ := fmt.Sscanf(v, "%d-%d", &min, &max)
+ n, _ := fmt.Sscanf(string(v), "%d-%d", &min, &max)
if n == 2 {
cpus += (max - min) + 1
} else {
}
func (r *Reporter) doCPUStats() {
- statFile, err := r.openStatFile("cpuacct", "cpuacct.stat", true)
- if err != nil {
- return
- }
- defer statFile.Close()
- b, err := r.readAllOrWarn(statFile)
- if err != nil {
- return
- }
+ var nextSample cpuSample
+ if r.statFiles.cpuStat != "" {
+ // v2
+ f, err := r.FS.Open(r.statFiles.cpuStat)
+ if err != nil {
+ return
+ }
+ defer f.Close()
+ nextSample = cpuSample{
+ hasData: true,
+ sampleTime: time.Now(),
+ cpus: r.getCPUCount(),
+ }
+ for {
+ var stat string
+ var val int64
+ n, err := fmt.Fscanf(f, "%s %d\n", &stat, &val)
+ if err != nil || n != 2 {
+ break
+ }
+ if stat == "user_usec" {
+ nextSample.user = float64(val) / 1000000
+ } else if stat == "system_usec" {
+ nextSample.sys = float64(val) / 1000000
+ }
+ }
+ } else if r.statFiles.cpuacctStat != "" {
+ // v1
+ b, err := fs.ReadFile(r.FS, r.statFiles.cpuacctStat)
+ if err != nil {
+ return
+ }
- var userTicks, sysTicks int64
- fmt.Sscanf(string(b), "user %d\nsystem %d", &userTicks, &sysTicks)
- userHz := float64(100)
- nextSample := cpuSample{
- hasData: true,
- sampleTime: time.Now(),
- user: float64(userTicks) / userHz,
- sys: float64(sysTicks) / userHz,
- cpus: r.getCPUCount(),
+ var userTicks, sysTicks int64
+ fmt.Sscanf(string(b), "user %d\nsystem %d", &userTicks, &sysTicks)
+ userHz := float64(100)
+ nextSample = cpuSample{
+ hasData: true,
+ sampleTime: time.Now(),
+ user: float64(userTicks) / userHz,
+ sys: float64(sysTicks) / userHz,
+ cpus: r.getCPUCount(),
+ }
}
delta := ""
defer close(r.flushed)
r.maxMemSample = make(map[memoryKey]int64)
- r.reportedStatFile = make(map[string]string)
- if !r.waitForCIDFile() || !r.waitForCgroup() {
+ if !r.waitForPid() {
return
}
+ r.findStatFiles()
+ close(r.ready)
r.lastNetSample = make(map[string]ioSample)
r.lastDiskIOSample = make(map[string]ioSample)
r.getMemSample()
r.doAllStats()
+ if r.PollPeriod < 1 {
+ r.PollPeriod = time.Second * 10
+ }
+
memTicker := time.NewTicker(time.Second)
mainTicker := time.NewTicker(r.PollPeriod)
for {
}
}
-// If CID is empty, wait for it to appear in CIDFile. Return true if
-// we get it before we learn (via r.done) that someone called Stop.
-func (r *Reporter) waitForCIDFile() bool {
- if r.CID != "" || r.CIDFile == "" {
- return true
- }
-
+// Wait for Pid() to return a real pid. Return true if this succeeds
+// before Stop is called.
+func (r *Reporter) waitForPid() bool {
ticker := time.NewTicker(100 * time.Millisecond)
defer ticker.Stop()
+ warningTimer := time.After(r.PollPeriod)
for {
- cid, err := ioutil.ReadFile(r.CIDFile)
- if err == nil && len(cid) > 0 {
- r.CID = string(cid)
- return true
+ r.pid = r.Pid()
+ if r.pid > 0 {
+ break
}
select {
case <-ticker.C:
+ case <-warningTimer:
+ r.Logger.Printf("warning: Pid() did not return a process ID after %v (config error?) -- still waiting...", r.PollPeriod)
case <-r.done:
- r.Logger.Printf("warning: CID never appeared in %+q: %v", r.CIDFile, err)
+ r.Logger.Printf("warning: Pid() never returned a process ID")
return false
}
}
+ return true
}
-// Wait for the cgroup stats files to appear in cgroup_root. Return
-// true if they appear before r.done indicates someone called Stop. If
-// they don't appear within one poll interval, log a warning and keep
-// waiting.
-func (r *Reporter) waitForCgroup() bool {
- ticker := time.NewTicker(100 * time.Millisecond)
- defer ticker.Stop()
- warningTimer := time.After(r.PollPeriod)
- for {
- c, err := r.openStatFile("cpuacct", "cgroup.procs", false)
- if err == nil {
- c.Close()
- return true
+func (r *Reporter) dumpSourceFiles(destdir string) error {
+ select {
+ case <-r.done:
+ return errors.New("reporter was never ready")
+ case <-r.ready:
+ }
+ todo := []string{
+ fmt.Sprintf("proc/%d/cgroup", r.pid),
+ fmt.Sprintf("proc/%d/cpuset", r.pid),
+ "proc/mounts",
+ "proc/self/smaps",
+ r.statFiles.cpusetCpus,
+ r.statFiles.cpuacctStat,
+ r.statFiles.cpuStat,
+ r.statFiles.ioServiceBytes,
+ r.statFiles.ioStat,
+ r.statFiles.memoryStat,
+ r.statFiles.memoryCurrent,
+ r.statFiles.memorySwapCurrent,
+ r.statFiles.netDev,
+ }
+ for _, path := range todo {
+ if path == "" {
+ continue
}
- select {
- case <-ticker.C:
- case <-warningTimer:
- r.Logger.Printf("warning: cgroup stats files have not appeared after %v (config error?) -- still waiting...", r.PollPeriod)
- case <-r.done:
- r.Logger.Printf("warning: cgroup stats files never appeared for %v", r.CID)
- return false
+ err := r.createParentsAndCopyFile(destdir, path)
+ if err != nil {
+ return err
+ }
+ }
+ r.reportPIDsMu.Lock()
+ r.reportPIDsMu.Unlock()
+ for _, pid := range r.reportPIDs {
+ path := fmt.Sprintf("proc/%d/stat", pid)
+ err := r.createParentsAndCopyFile(destdir, path)
+ if err != nil {
+ return err
+ }
+ }
+ if proc, err := os.FindProcess(r.pid); err != nil || proc.Signal(syscall.Signal(0)) != nil {
+ return fmt.Errorf("process %d no longer exists, snapshot is probably broken", r.pid)
+ }
+ return nil
+}
+
+func (r *Reporter) createParentsAndCopyFile(destdir, path string) error {
+ buf, err := fs.ReadFile(r.FS, path)
+ if os.IsNotExist(err) {
+ return nil
+ } else if err != nil {
+ return err
+ }
+ if parent, _ := filepath.Split(path); parent != "" {
+ err = os.MkdirAll(destdir+"/"+parent, 0777)
+ if err != nil {
+ return fmt.Errorf("mkdir %s: %s", destdir+"/"+parent, err)
}
}
+ destfile := destdir + "/" + path
+ r.Logger.Printf("copy %s to %s -- size %d", path, destfile, len(buf))
+ return os.WriteFile(destfile, buf, 0777)
}
import (
"bytes"
- "errors"
"fmt"
+ "io/fs"
"os"
- "path"
"regexp"
+ "runtime"
"strconv"
"testing"
"time"
)
const logMsgPrefix = `(?m)(.*\n)*.* msg="`
-const GiB = int64(1024 * 1024 * 1024)
-type fakeStat struct {
- cgroupRoot string
- statName string
- unit string
- value int64
+func Test(t *testing.T) {
+ TestingT(t)
}
-var fakeRSS = fakeStat{
- cgroupRoot: "testdata/fakestat",
- statName: "mem rss",
- unit: "bytes",
- // Note this is the value of total_rss, not rss, because that's what should
- // always be reported for thresholds and maxima.
- value: 750 * 1024 * 1024,
+var _ = Suite(&suite{})
+
+type testdatasource struct {
+ fspath string
+ pid int
}
-func Test(t *testing.T) {
- TestingT(t)
+func (s testdatasource) Pid() int {
+ return s.pid
+}
+func (s testdatasource) FS() fs.FS {
+ return os.DirFS(s.fspath)
}
-var _ = Suite(&suite{
- logger: logrus.New(),
-})
+// To generate a test case for a new OS target, build
+// cmd/arvados-server and run
+//
+// arvados-server crunchstat -dump ./testdata/example1234 sleep 2
+var testdata = map[string]testdatasource{
+ "debian11": {fspath: "testdata/debian11", pid: 4153022},
+ "debian12": {fspath: "testdata/debian12", pid: 1115883},
+ "ubuntu1804": {fspath: "testdata/ubuntu1804", pid: 2523},
+ "ubuntu2004": {fspath: "testdata/ubuntu2004", pid: 1360},
+ "ubuntu2204": {fspath: "testdata/ubuntu2204", pid: 1967},
+}
type suite struct {
- cgroupRoot string
- logbuf bytes.Buffer
- logger *logrus.Logger
+ logbuf bytes.Buffer
+ logger *logrus.Logger
+ debian12MemoryCurrent int64
}
func (s *suite) SetUpSuite(c *C) {
+ s.logger = logrus.New()
s.logger.Out = &s.logbuf
+
+ buf, err := os.ReadFile("testdata/debian12/sys/fs/cgroup/user.slice/user-1000.slice/session-4.scope/memory.current")
+ c.Assert(err, IsNil)
+ _, err = fmt.Sscanf(string(buf), "%d", &s.debian12MemoryCurrent)
+ c.Assert(err, IsNil)
}
func (s *suite) SetUpTest(c *C) {
- s.cgroupRoot = ""
s.logbuf.Reset()
}
-func (s *suite) tempCgroup(c *C, sourceDir string) error {
- tempDir := c.MkDir()
- dirents, err := os.ReadDir(sourceDir)
- if err != nil {
- return err
+// Report stats for the current (go test) process's cgroup, using the
+// test host's real procfs/sysfs.
+func (s *suite) TestReportCurrent(c *C) {
+ r := Reporter{
+ Pid: os.Getpid,
+ Logger: s.logger,
+ PollPeriod: time.Second,
+ }
+ r.Start()
+ defer r.Stop()
+ checkPatterns := []string{
+ `(?ms).*rss.*`,
+ `(?ms).*net:.*`,
+ `(?ms).*blkio:.*`,
+ `(?ms).* [\d.]+ user [\d.]+ sys ` + fmt.Sprintf("%d", runtime.NumCPU()) + ` cpus -- .*`,
}
- for _, dirent := range dirents {
- srcData, err := os.ReadFile(path.Join(sourceDir, dirent.Name()))
- if err != nil {
- return err
+ for deadline := time.Now().Add(4 * time.Second); !c.Failed(); time.Sleep(time.Millisecond) {
+ done := true
+ for _, pattern := range checkPatterns {
+ if m := regexp.MustCompile(pattern).FindSubmatch(s.logbuf.Bytes()); len(m) == 0 {
+ done = false
+ if time.Now().After(deadline) {
+ c.Errorf("timed out waiting for %s", pattern)
+ }
+ }
}
- destPath := path.Join(tempDir, dirent.Name())
- err = os.WriteFile(destPath, srcData, 0o600)
- if err != nil {
- return err
+ if done {
+ break
}
}
- s.cgroupRoot = tempDir
- return nil
-}
-
-func (s *suite) addPidToCgroup(pid int) error {
- if s.cgroupRoot == "" {
- return errors.New("cgroup has not been set up for this test")
- }
- procsPath := path.Join(s.cgroupRoot, "cgroup.procs")
- procsFile, err := os.OpenFile(procsPath, os.O_APPEND|os.O_CREATE|os.O_WRONLY, 0o600)
- if err != nil {
- return err
- }
- pidLine := strconv.Itoa(pid) + "\n"
- _, err = procsFile.Write([]byte(pidLine))
- if err != nil {
- procsFile.Close()
- return err
- }
- return procsFile.Close()
-}
-
-func (s *suite) TestReadAllOrWarnFail(c *C) {
- rep := Reporter{Logger: s.logger}
-
- // The special file /proc/self/mem can be opened for
- // reading, but reading from byte 0 returns an error.
- f, err := os.Open("/proc/self/mem")
- c.Assert(err, IsNil)
- defer f.Close()
- _, err = rep.readAllOrWarn(f)
- c.Check(err, NotNil)
- c.Check(s.logbuf.String(), Matches, ".* msg=\"warning: read /proc/self/mem: .*\n")
-}
-
-func (s *suite) TestReadAllOrWarnSuccess(c *C) {
- rep := Reporter{Logger: s.logger}
-
- f, err := os.Open("./crunchstat_test.go")
- c.Assert(err, IsNil)
- defer f.Close()
- data, err := rep.readAllOrWarn(f)
- c.Check(err, IsNil)
- c.Check(string(data), Matches, "(?ms).*\npackage crunchstat\n.*")
- c.Check(s.logbuf.String(), Equals, "")
+ c.Logf("%s", s.logbuf.String())
}
+// Report stats for a the current (go test) process.
func (s *suite) TestReportPIDs(c *C) {
r := Reporter{
+ Pid: func() int { return 1 },
Logger: s.logger,
- CgroupRoot: "/sys/fs/cgroup",
PollPeriod: time.Second,
}
r.Start()
+ defer r.Stop()
r.ReportPID("init", 1)
r.ReportPID("test_process", os.Getpid())
r.ReportPID("nonexistent", 12345) // should be silently ignored/omitted
c.Logf("%s", s.logbuf.String())
}
+func (s *suite) TestAllTestdata(c *C) {
+ for platform, datasource := range testdata {
+ s.logbuf.Reset()
+ c.Logf("=== %s", platform)
+ rep := Reporter{
+ Pid: datasource.Pid,
+ FS: datasource.FS(),
+ Logger: s.logger,
+ PollPeriod: time.Second,
+ ThresholdLogger: s.logger,
+ Debug: true,
+ }
+ rep.Start()
+ rep.Stop()
+ logs := s.logbuf.String()
+ c.Logf("%s", logs)
+ c.Check(logs, Matches, `(?ms).* \d\d+ rss\\n.*`)
+ c.Check(logs, Matches, `(?ms).*blkio:\d+:\d+ \d+ write \d+ read\\n.*`)
+ c.Check(logs, Matches, `(?ms).*net:\S+ \d+ tx \d+ rx\\n.*`)
+ c.Check(logs, Matches, `(?ms).* [\d.]+ user [\d.]+ sys [2-9]\d* cpus.*`)
+ }
+}
+
func (s *suite) testRSSThresholds(c *C, rssPercentages []int64, alertCount int) {
c.Assert(alertCount <= len(rssPercentages), Equals, true)
rep := Reporter{
- CgroupRoot: fakeRSS.cgroupRoot,
- Logger: s.logger,
+ Pid: testdata["debian12"].Pid,
+ FS: testdata["debian12"].FS(),
+ Logger: s.logger,
MemThresholds: map[string][]Threshold{
- "rss": NewThresholdsFromPercentages(GiB, rssPercentages),
+ "rss": NewThresholdsFromPercentages(s.debian12MemoryCurrent*3/2, rssPercentages),
},
PollPeriod: time.Second * 10,
ThresholdLogger: s.logger,
logCheck = Not(Matches)
}
pattern := fmt.Sprintf(`%sContainer using over %d%% of memory \(rss %d/%d bytes\)"`,
- logMsgPrefix, expectPercentage, fakeRSS.value, GiB)
+ logMsgPrefix, expectPercentage, s.debian12MemoryCurrent, s.debian12MemoryCurrent*3/2)
c.Check(logs, logCheck, pattern)
}
}
}
func (s *suite) TestMultipleRSSThresholdsSomePassed(c *C) {
- s.testRSSThresholds(c, []int64{60, 70, 80, 90}, 2)
+ s.testRSSThresholds(c, []int64{45, 60, 75, 90}, 2)
}
func (s *suite) TestMultipleRSSThresholdsAllPassed(c *C) {
}
func (s *suite) TestLogMaxima(c *C) {
- err := s.tempCgroup(c, fakeRSS.cgroupRoot)
- c.Assert(err, IsNil)
rep := Reporter{
- CgroupRoot: s.cgroupRoot,
+ Pid: testdata["debian12"].Pid,
+ FS: testdata["debian12"].FS(),
Logger: s.logger,
PollPeriod: time.Second * 10,
- TempDir: s.cgroupRoot,
+ TempDir: "/",
}
rep.Start()
rep.Stop()
- rep.LogMaxima(s.logger, map[string]int64{"rss": GiB})
+ rep.LogMaxima(s.logger, map[string]int64{"rss": s.debian12MemoryCurrent * 3 / 2})
logs := s.logbuf.String()
c.Logf("%s", logs)
expectRSS := fmt.Sprintf(`Maximum container memory rss usage was %d%%, %d/%d bytes`,
- 100*fakeRSS.value/GiB, fakeRSS.value, GiB)
+ 66, s.debian12MemoryCurrent, s.debian12MemoryCurrent*3/2)
for _, expected := range []string{
`Maximum disk usage was \d+%, \d+/\d+ bytes`,
- `Maximum container memory cache usage was 73400320 bytes`,
- `Maximum container memory swap usage was 320 bytes`,
- `Maximum container memory pgmajfault usage was 20 faults`,
+ `Maximum container memory swap usage was \d\d+ bytes`,
+ `Maximum container memory pgmajfault usage was \d\d+ faults`,
expectRSS,
} {
pattern := logMsgPrefix + expected + `"`
}
func (s *suite) TestLogProcessMemMax(c *C) {
- err := s.tempCgroup(c, fakeRSS.cgroupRoot)
- c.Assert(err, IsNil)
- pid := os.Getpid()
- err = s.addPidToCgroup(pid)
- c.Assert(err, IsNil)
-
rep := Reporter{
- CgroupRoot: s.cgroupRoot,
+ Pid: os.Getpid,
Logger: s.logger,
PollPeriod: time.Second * 10,
- TempDir: s.cgroupRoot,
}
- rep.ReportPID("test-run", pid)
+ rep.ReportPID("test-run", os.Getpid())
rep.Start()
rep.Stop()
rep.LogProcessMemMax(s.logger)
--- /dev/null
+0::/user.slice/user-1000.slice/session-5424.scope
--- /dev/null
+/user.slice
--- /dev/null
+Inter-| Receive | Transmit
+ face |bytes packets errs drop fifo frame compressed multicast|bytes packets errs drop fifo colls carrier compressed
+ lo: 161155690314 90375905 0 0 0 0 0 0 161155690314 90375905 0 0 0 0 0 0
+ ens3: 163923112 1884265 0 0 0 0 0 0 43218121 239766 0 0 0 0 0 0
+ ens9: 24574250159 83081845 0 0 0 0 0 0 49312502353 91591944 0 0 0 0 0 0
+docker0: 6958795 109630 0 0 0 0 0 0 671569248 187319 0 0 0 0 0 0
+tailscale0: 82192857 118550 0 0 0 0 0 0 6898232 100243 0 0 0 0 0 0
--- /dev/null
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+proc /proc proc rw,nosuid,nodev,noexec,relatime 0 0
+udev /dev devtmpfs rw,nosuid,relatime,size=4055540k,nr_inodes=1013885,mode=755 0 0
+devpts /dev/pts devpts rw,nosuid,noexec,relatime,gid=5,mode=620,ptmxmode=000 0 0
+tmpfs /run tmpfs rw,nosuid,nodev,noexec,relatime,size=814692k,mode=755 0 0
+/dev/vdb1 / ext4 rw,relatime,errors=remount-ro 0 0
+securityfs /sys/kernel/security securityfs rw,nosuid,nodev,noexec,relatime 0 0
+tmpfs /dev/shm tmpfs rw,nosuid,nodev 0 0
+tmpfs /run/lock tmpfs rw,nosuid,nodev,noexec,relatime,size=5120k 0 0
+cgroup2 /sys/fs/cgroup cgroup2 rw,nosuid,nodev,noexec,relatime,nsdelegate,memory_recursiveprot 0 0
+pstore /sys/fs/pstore pstore rw,nosuid,nodev,noexec,relatime 0 0
+none /sys/fs/bpf bpf rw,nosuid,nodev,noexec,relatime,mode=700 0 0
+systemd-1 /proc/sys/fs/binfmt_misc autofs rw,relatime,fd=30,pgrp=1,timeout=0,minproto=5,maxproto=5,direct,pipe_ino=9589 0 0
+hugetlbfs /dev/hugepages hugetlbfs rw,relatime,pagesize=2M 0 0
+mqueue /dev/mqueue mqueue rw,nosuid,nodev,noexec,relatime 0 0
+debugfs /sys/kernel/debug debugfs rw,nosuid,nodev,noexec,relatime 0 0
+tracefs /sys/kernel/tracing tracefs rw,nosuid,nodev,noexec,relatime 0 0
+configfs /sys/kernel/config configfs rw,nosuid,nodev,noexec,relatime 0 0
+fusectl /sys/fs/fuse/connections fusectl rw,nosuid,nodev,noexec,relatime 0 0
+none /tmp tmpfs rw,relatime 0 0
+tmpfs /run/user/1000 tmpfs rw,nosuid,nodev,relatime,size=814688k,nr_inodes=203672,mode=700,uid=1000,gid=1000 0 0
+binfmt_misc /proc/sys/fs/binfmt_misc binfmt_misc rw,nosuid,nodev,noexec,relatime 0 0
+arvados-client /home/tom/keep fuse.arvados-client rw,nosuid,nodev,relatime,user_id=1000,group_id=1000 0 0
--- /dev/null
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--- /dev/null
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--- /dev/null
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+++ /dev/null
-crunchstat
+++ /dev/null
-// Copyright (C) The Arvados Authors. All rights reserved.
-//
-// SPDX-License-Identifier: AGPL-3.0
-
-package main
-
-import (
- "bufio"
- "flag"
- "fmt"
- "io"
- "log"
- "os"
- "os/exec"
- "os/signal"
- "syscall"
- "time"
-
- "git.arvados.org/arvados.git/lib/cmd"
- "git.arvados.org/arvados.git/lib/crunchstat"
-)
-
-const MaxLogLine = 1 << 14 // Child stderr lines >16KiB will be split
-
-var (
- signalOnDeadPPID int = 15
- ppidCheckInterval = time.Second
- version = "dev"
-)
-
-type logger interface {
- Printf(string, ...interface{})
-}
-
-func main() {
- reporter := crunchstat.Reporter{
- Logger: log.New(os.Stderr, "crunchstat: ", 0),
- }
-
- flags := flag.NewFlagSet(os.Args[0], flag.ExitOnError)
- flags.StringVar(&reporter.CgroupRoot, "cgroup-root", "", "Root of cgroup tree")
- flags.StringVar(&reporter.CgroupParent, "cgroup-parent", "", "Name of container parent under cgroup")
- flags.StringVar(&reporter.CIDFile, "cgroup-cid", "", "Path to container id file")
- flags.IntVar(&signalOnDeadPPID, "signal-on-dead-ppid", signalOnDeadPPID, "Signal to send child if crunchstat's parent process disappears (0 to disable)")
- flags.DurationVar(&ppidCheckInterval, "ppid-check-interval", ppidCheckInterval, "Time between checks for parent process disappearance")
- pollMsec := flags.Int64("poll", 1000, "Reporting interval, in milliseconds")
- getVersion := flags.Bool("version", false, "Print version information and exit.")
-
- if ok, code := cmd.ParseFlags(flags, os.Args[0], os.Args[1:], "program [args ...]", os.Stderr); !ok {
- os.Exit(code)
- } else if *getVersion {
- fmt.Printf("crunchstat %s\n", version)
- return
- } else if flags.NArg() == 0 {
- fmt.Fprintf(os.Stderr, "missing required argument: program (try -help)\n")
- os.Exit(2)
- }
-
- reporter.Logger.Printf("crunchstat %s started", version)
-
- if reporter.CgroupRoot == "" {
- reporter.Logger.Printf("error: must provide -cgroup-root")
- os.Exit(2)
- } else if signalOnDeadPPID < 0 {
- reporter.Logger.Printf("-signal-on-dead-ppid=%d is invalid (use a positive signal number, or 0 to disable)", signalOnDeadPPID)
- os.Exit(2)
- }
- reporter.PollPeriod = time.Duration(*pollMsec) * time.Millisecond
-
- reporter.Start()
- err := runCommand(flags.Args(), reporter.Logger)
- reporter.Stop()
-
- if err, ok := err.(*exec.ExitError); ok {
- // The program has exited with an exit code != 0
-
- // This works on both Unix and Windows. Although
- // package syscall is generally platform dependent,
- // WaitStatus is defined for both Unix and Windows and
- // in both cases has an ExitStatus() method with the
- // same signature.
- if status, ok := err.Sys().(syscall.WaitStatus); ok {
- os.Exit(status.ExitStatus())
- } else {
- reporter.Logger.Printf("ExitError without WaitStatus: %v", err)
- os.Exit(1)
- }
- } else if err != nil {
- reporter.Logger.Printf("error running command: %v", err)
- os.Exit(1)
- }
-}
-
-func runCommand(argv []string, logger logger) error {
- cmd := exec.Command(argv[0], argv[1:]...)
-
- logger.Printf("Running %v", argv)
-
- // Child process will use our stdin and stdout pipes
- // (we close our copies below)
- cmd.Stdin = os.Stdin
- cmd.Stdout = os.Stdout
-
- // Forward SIGINT and SIGTERM to child process
- sigChan := make(chan os.Signal, 1)
- go func(sig <-chan os.Signal) {
- catch := <-sig
- if cmd.Process != nil {
- cmd.Process.Signal(catch)
- }
- logger.Printf("notice: caught signal: %v", catch)
- }(sigChan)
- signal.Notify(sigChan, syscall.SIGTERM)
- signal.Notify(sigChan, syscall.SIGINT)
-
- // Kill our child proc if our parent process disappears
- if signalOnDeadPPID != 0 {
- go sendSignalOnDeadPPID(ppidCheckInterval, signalOnDeadPPID, os.Getppid(), cmd, logger)
- }
-
- // Funnel stderr through our channel
- stderrPipe, err := cmd.StderrPipe()
- if err != nil {
- logger.Printf("error in StderrPipe: %v", err)
- return err
- }
-
- // Run subprocess
- if err := cmd.Start(); err != nil {
- logger.Printf("error in cmd.Start: %v", err)
- return err
- }
-
- // Close stdin/stdout in this (parent) process
- os.Stdin.Close()
- os.Stdout.Close()
-
- err = copyPipeToChildLog(stderrPipe, log.New(os.Stderr, "", 0))
- if err != nil {
- cmd.Process.Kill()
- return err
- }
-
- return cmd.Wait()
-}
-
-func sendSignalOnDeadPPID(intvl time.Duration, signum, ppidOrig int, cmd *exec.Cmd, logger logger) {
- ticker := time.NewTicker(intvl)
- for range ticker.C {
- ppid := os.Getppid()
- if ppid == ppidOrig {
- continue
- }
- if cmd.Process == nil {
- // Child process isn't running yet
- continue
- }
- logger.Printf("notice: crunchstat ppid changed from %d to %d -- killing child pid %d with signal %d", ppidOrig, ppid, cmd.Process.Pid, signum)
- err := cmd.Process.Signal(syscall.Signal(signum))
- if err != nil {
- logger.Printf("error: sending signal: %s", err)
- continue
- }
- ticker.Stop()
- break
- }
-}
-
-func copyPipeToChildLog(in io.ReadCloser, logger logger) error {
- reader := bufio.NewReaderSize(in, MaxLogLine)
- var prefix string
- for {
- line, isPrefix, err := reader.ReadLine()
- if err == io.EOF {
- break
- } else if err != nil {
- return fmt.Errorf("error reading child stderr: %w", err)
- }
- var suffix string
- if isPrefix {
- suffix = "[...]"
- }
- logger.Printf("%s%s%s", prefix, string(line), suffix)
- // Set up prefix for following line
- if isPrefix {
- prefix = "[...]"
- } else {
- prefix = ""
- }
- }
- return in.Close()
-}
+++ /dev/null
-// Copyright (C) The Arvados Authors. All rights reserved.
-//
-// SPDX-License-Identifier: AGPL-3.0
-
-package main
-
-import (
- "bufio"
- "bytes"
- "fmt"
- "io"
- "io/ioutil"
- "log"
- "math/rand"
- "os"
- "os/exec"
- "sync"
- "syscall"
- "testing"
- "time"
-)
-
-// Test that CopyPipeToChildLog works even on lines longer than
-// bufio.MaxScanTokenSize.
-func TestCopyPipeToChildLogLongLines(t *testing.T) {
- logger, logBuf := bufLogger()
-
- pipeIn, pipeOut := io.Pipe()
- copied := make(chan bool)
- go func() {
- copyPipeToChildLog(pipeIn, logger)
- close(copied)
- }()
-
- sentBytes := make([]byte, bufio.MaxScanTokenSize+MaxLogLine+(1<<22))
- go func() {
- pipeOut.Write([]byte("before\n"))
-
- for i := range sentBytes {
- // Some bytes that aren't newlines:
- sentBytes[i] = byte((rand.Int() & 0xff) | 0x80)
- }
- sentBytes[len(sentBytes)-1] = '\n'
- pipeOut.Write(sentBytes)
-
- pipeOut.Write([]byte("after"))
- pipeOut.Close()
- }()
-
- if before, err := logBuf.ReadBytes('\n'); err != nil || string(before) != "before\n" {
- t.Fatalf("\"before\n\" not received (got \"%s\", %s)", before, err)
- }
-
- var receivedBytes []byte
- done := false
- for !done {
- line, err := logBuf.ReadBytes('\n')
- if err != nil {
- t.Fatal(err)
- }
- if len(line) >= 5 && string(line[0:5]) == "[...]" {
- if receivedBytes == nil {
- t.Fatal("Beginning of line reported as continuation")
- }
- line = line[5:]
- }
- if len(line) >= 6 && string(line[len(line)-6:]) == "[...]\n" {
- line = line[:len(line)-6]
- } else {
- done = true
- }
- receivedBytes = append(receivedBytes, line...)
- }
- if bytes.Compare(receivedBytes, sentBytes) != 0 {
- t.Fatalf("sent %d bytes, got %d different bytes", len(sentBytes), len(receivedBytes))
- }
-
- if after, err := logBuf.ReadBytes('\n'); err != nil || string(after) != "after\n" {
- t.Fatalf("\"after\n\" not received (got \"%s\", %s)", after, err)
- }
-
- select {
- case <-time.After(time.Second):
- t.Fatal("Timeout")
- case <-copied:
- // Done.
- }
-}
-
-func bufLogger() (*log.Logger, *bufio.Reader) {
- r, w := io.Pipe()
- logger := log.New(w, "", 0)
- return logger, bufio.NewReader(r)
-}
-
-func TestSignalOnDeadPPID(t *testing.T) {
- if !testDeadParent(t, 0) {
- t.Fatal("child should still be alive after parent dies")
- }
- if testDeadParent(t, 15) {
- t.Fatal("child should have been killed when parent died")
- }
-}
-
-// testDeadParent returns true if crunchstat's child proc is still
-// alive after its parent dies.
-func testDeadParent(t *testing.T, signum int) bool {
- var err error
- var bin, childlockfile, parentlockfile *os.File
- for _, f := range []**os.File{&bin, &childlockfile, &parentlockfile} {
- *f, err = ioutil.TempFile("", "crunchstat_")
- if err != nil {
- t.Fatal(err)
- }
- defer (*f).Close()
- defer os.Remove((*f).Name())
- }
-
- bin.Close()
- err = exec.Command("go", "build", "-o", bin.Name()).Run()
- if err != nil {
- t.Fatal(err)
- }
-
- err = syscall.Flock(int(parentlockfile.Fd()), syscall.LOCK_EX)
- if err != nil {
- t.Fatal(err)
- }
-
- cmd := exec.Command("bash", "-c", `
-set -e
-"$BINFILE" -cgroup-root=/none -ppid-check-interval=10ms -signal-on-dead-ppid="$SIGNUM" bash -c '
- set -e
- unlock() {
- flock --unlock "$CHILDLOCKFD"
- kill %1
- }
- trap unlock TERM
- flock --exclusive "$CHILDLOCKFD"
- echo -n "$$" > "$CHILDLOCKFILE"
- flock --unlock "$PARENTLOCKFD"
- sleep 20 </dev/null >/dev/null 2>/dev/null &
- wait %1
- unlock
-' &
-
-# wait for inner bash to start, to ensure $BINFILE has seen this bash proc as its initial PPID
-flock --exclusive "$PARENTLOCKFILE" true
-`)
- cmd.Env = append(os.Environ(),
- "SIGNUM="+fmt.Sprintf("%d", signum),
- "PARENTLOCKFD=3",
- "PARENTLOCKFILE="+parentlockfile.Name(),
- "CHILDLOCKFD=4",
- "CHILDLOCKFILE="+childlockfile.Name(),
- "BINFILE="+bin.Name())
- cmd.ExtraFiles = []*os.File{parentlockfile, childlockfile}
- stderr, err := cmd.StderrPipe()
- if err != nil {
- t.Fatal(err)
- }
- stdout, err := cmd.StdoutPipe()
- if err != nil {
- t.Fatal(err)
- }
- cmd.Start()
- defer cmd.Wait()
-
- var wg sync.WaitGroup
- wg.Add(2)
- defer wg.Wait()
- for _, rdr := range []io.ReadCloser{stderr, stdout} {
- go func(rdr io.ReadCloser) {
- defer wg.Done()
- buf := make([]byte, 1024)
- for {
- n, err := rdr.Read(buf)
- if n > 0 {
- t.Logf("%s", buf[:n])
- }
- if err != nil {
- return
- }
- }
- }(rdr)
- }
-
- // Wait until inner bash process releases parentlockfile
- // (which means it has locked childlockfile and written its
- // PID)
- err = exec.Command("flock", "--exclusive", parentlockfile.Name(), "true").Run()
- if err != nil {
- t.Fatal(err)
- }
-
- childDone := make(chan bool)
- go func() {
- // Notify the main thread when the inner bash process
- // releases its lock on childlockfile (which means
- // either its sleep process ended or it received a
- // TERM signal).
- t0 := time.Now()
- err = exec.Command("flock", "--exclusive", childlockfile.Name(), "true").Run()
- if err != nil {
- t.Fatal(err)
- }
- t.Logf("child done after %s", time.Since(t0))
- close(childDone)
- }()
-
- select {
- case <-time.After(500 * time.Millisecond):
- // Inner bash process is still alive after the timeout
- // period. Kill it now, so our stdout and stderr pipes
- // can finish and we don't leave a mess of child procs
- // behind.
- buf, err := ioutil.ReadFile(childlockfile.Name())
- if err != nil {
- t.Fatal(err)
- }
- var childPID int
- _, err = fmt.Sscanf(string(buf), "%d", &childPID)
- if err != nil {
- t.Fatal(err)
- }
- child, err := os.FindProcess(childPID)
- if err != nil {
- t.Fatal(err)
- }
- child.Signal(syscall.Signal(15))
- return true
-
- case <-childDone:
- // Inner bash process ended soon after its grandparent
- // ended.
- return false
- }
-}
projects / arvados.git / commitdiff