Converts README.Rmd to README.html for documentation.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
if [[ "$NEED_SDK_R" = true ]]; then
# R SDK stuff
echo -n 'R: '
if [[ "$NEED_SDK_R" = true ]]; then
# R SDK stuff
echo -n 'R: '
- which R || fatal "No R. Try: apt-get install r-base"
+ which Rscript || fatal "No Rscript. Try: apt-get install r-base"
- R -q -e "library('testthat')" || fatal "No testthat. Try: apt-get install r-cran-testthat"
+ Rscript -e "library('testthat')" || fatal "No testthat. Try: apt-get install r-cran-testthat"
# needed for roxygen2, needed for devtools, needed for R sdk
pkg-config --exists libxml-2.0 || fatal "No libxml2. Try: apt-get install libxml2-dev"
# needed for pkgdown, builds R SDK doc pages
# needed for roxygen2, needed for devtools, needed for R sdk
pkg-config --exists libxml-2.0 || fatal "No libxml2. Try: apt-get install libxml2-dev"
# needed for pkgdown, builds R SDK doc pages
install_R_sdk() {
if [[ "$NEED_SDK_R" = true ]]; then
cd "$WORKSPACE/sdk/R" \
install_R_sdk() {
if [[ "$NEED_SDK_R" = true ]]; then
cd "$WORKSPACE/sdk/R" \
- && R --quiet --vanilla --file=install_deps.R
+ && Rscript --vanilla install_deps.R
fi
}
do_install sdk/R R_sdk
fi
}
do_install sdk/R R_sdk
test_R_sdk() {
if [[ "$NEED_SDK_R" = true ]]; then
cd "$WORKSPACE/sdk/R" \
test_R_sdk() {
if [[ "$NEED_SDK_R" = true ]]; then
cd "$WORKSPACE/sdk/R" \
- && R --quiet --file=run_test.R
+ && Rscript --vanilla run_test.R
`which R`
if $? == 0
Dir.chdir("../sdk/R/") do
`which R`
if $? == 0
Dir.chdir("../sdk/R/") do
- STDERR.puts `R --quiet --vanilla -e 'pkgdown::build_site()' 2>&1`
+ STDERR.puts `Rscript createDoc.R README.Rmd index.html 2>&1`
- cp_r("../sdk/R/docs", "sdk/R/arvados")
+ cp_r("../sdk/R/README.html", "sdk/R/")
else
puts "Warning: R not found, R documentation will not be generated".colorize(:light_red)
end
else
puts "Warning: R not found, R documentation will not be generated".colorize(:light_red)
end
SPDX-License-Identifier: CC-BY-SA-3.0
{% endcomment %}
SPDX-License-Identifier: CC-BY-SA-3.0
{% endcomment %}
-notextile. <iframe src="arvados/" style="width:100%; height:100%; border:none" />
+notextile. <iframe src="README.html" style="width:100%; height:100%; border:none" />
if (!requireNamespace("roxygen2")) {
install.packages("roxygen2")
}
if (!requireNamespace("roxygen2")) {
install.packages("roxygen2")
}
-
-# These install from github so install known-good versions instead of
-# letting any push to master break our build.
-if (!requireNamespace("pkgload")) {
- devtools::install_github("r-lib/pkgload", ref="7a97de62adf1793c03e73095937e4655baad79c9")
+if (!requireNamespace("knitr")) {
+ install.packages("knitr")
-if (!requireNamespace("pkgdown")) {
- devtools::install_github("r-lib/pkgdown", ref="897ffbc016549c11c4263cb5d1f6e9f5c99efb45")
+if (!requireNamespace("markdown")) {
+ install.packages("markdown")
}
devtools::install_dev_deps()
}
devtools::install_dev_deps()