end
gem 'jquery-rails'
+gem 'anjlab-bootstrap-rails', '>= 2.2', :require => 'bootstrap-rails'
# To use ActiveModel has_secure_password
# gem 'bcrypt-ruby', '~> 3.0.0'
activesupport (3.2.11)
i18n (~> 0.6)
multi_json (~> 1.0)
+ anjlab-bootstrap-rails (2.2.2.1)
+ railties (>= 3.0)
+ sass (>= 3.2)
arel (3.0.2)
builder (3.0.4)
capistrano (2.14.1)
ruby
DEPENDENCIES
+ anjlab-bootstrap-rails (>= 2.2)
coffee-rails (~> 3.2.1)
jquery-rails
passenger
//
//= require jquery
//= require jquery_ujs
+//= require twitter/bootstrap
//= require_tree .
* compiled file, but it's generally better to create a new file per style scope.
*
*= require_self
+ *= require twitter/bootstrap
+ *= require twitter/bootstrap-responsive
*= require_tree .
*/
class CollectionsController < ApplicationController
before_filter :ensure_current_user_is_admin
+ def graph
+ index
+ end
+
def index
@links = Link.where(head_kind: 'orvos#collection') |
Link.where(tail_kind: 'orvos#collection')
--- /dev/null
+<% content_for :head do %>
+<%= javascript_include_tag '/d3.v3.min.js' %>
+
+ <style type="text/css">
+
+path.link {
+ fill: none;
+ stroke: #666;
+ stroke-width: 1.5px;
+}
+
+path.link.derived_from {
+ stroke: green;
+ stroke-dasharray: 0,4 1;
+}
+
+path.link.can_write {
+ stroke: green;
+}
+
+path.link.member_of {
+ stroke: blue;
+ stroke-dasharray: 0,4 1;
+}
+
+path.link.created {
+ stroke: red;
+}
+
+circle.node {
+ fill: #ccc;
+ stroke: #333;
+ stroke-width: 1.5px;
+}
+
+edgetext {
+ font: 12px sans-serif;
+ pointer-events: none;
+ text-align: center;
+}
+
+text {
+ font: 12px sans-serif;
+ pointer-events: none;
+}
+
+text.shadow {
+ stroke: #fff;
+ stroke-width: 3px;
+ stroke-opacity: .8;
+}
+
+ </style>
+<% end %>
+
+<% content_for :js do %>
+
+jQuery(function($){
+
+ var links = <%= raw d3ify_links(@links).to_json %>;
+
+ var nodes = {};
+
+ // Compute the distinct nodes from the links.
+ links.forEach(function(link) {
+ link.source = nodes[link.source] || (nodes[link.source] = {name: link.source});
+ link.target = nodes[link.target] || (nodes[link.target] = {name: link.target});
+ });
+
+ var fill_for = {'ldvyl': 'green',
+ 'j58dm': 'red',
+ '4zz18': 'blue'};
+ jQuery.each(nodes, function(i, node) {
+ var m = node.name.match(/-([a-z0-9]{5})-/)
+ if (m)
+ node.fill = fill_for[m[1]] || '#ccc';
+ else if (node.name.match(/^[0-9a-f]{32}/))
+ node.fill = fill_for['4zz18'];
+ else
+ node.fill = '#ccc';
+ });
+
+ var w = 960,
+ h = 600;
+
+ var force = d3.layout.force()
+ .nodes(d3.values(nodes))
+ .links(links)
+ .size([w, h])
+ .linkDistance(150)
+ .charge(-300)
+ .on("tick", tick)
+ .start();
+
+ var svg = d3.select("body").append("svg:svg")
+ .attr("width", w)
+ .attr("height", h);
+
+ // Per-type markers, as they don't inherit styles.
+ svg.append("svg:defs").selectAll("marker")
+ .data(["member_of", "owner", "derived_from"])
+ .enter().append("svg:marker")
+ .attr("id", String)
+ .attr("viewBox", "0 -5 10 10")
+ .attr("refX", 15)
+ .attr("refY", -1.5)
+ .attr("markerWidth", 6)
+ .attr("markerHeight", 6)
+ .attr("orient", "auto")
+ .append("svg:path")
+ .attr("d", "M0,-5L10,0L0,5");
+
+ var path = svg.append("svg:g").selectAll("path")
+ .data(force.links())
+ .enter().append("svg:path")
+ .attr("class", function(d) { return "link " + d.type; })
+ .attr("marker-end", function(d) { return "url(#" + d.type + ")"; });
+
+ var circle = svg.append("svg:g").selectAll("circle")
+ .data(force.nodes())
+ .enter().append("svg:circle")
+ .attr("r", 6)
+ .style("fill", function(d) { return d.fill; })
+ .call(force.drag);
+
+ var text = svg.append("svg:g").selectAll("g")
+ .data(force.nodes())
+ .enter().append("svg:g");
+
+ // A copy of the text with a thick white stroke for legibility.
+ text.append("svg:text")
+ .attr("x", 8)
+ .attr("y", ".31em")
+ .attr("class", "shadow")
+ .text(function(d) { return d.name.replace(/^([0-9a-z]{5}-){2}/,''); });
+
+ text.append("svg:text")
+ .attr("x", 8)
+ .attr("y", ".31em")
+ .text(function(d) { return d.name.replace(/^([0-9a-z]{5}-){2}/,''); });
+
+ var edgetext = svg.append("svg:g").selectAll("g")
+ .data(force.links())
+ .enter().append("svg:g");
+
+ edgetext
+ .append("svg:text")
+ .attr("x","-5em")
+ .attr("y","-0.2em")
+ .text(function(d) { return d.type; });
+
+ // Use elliptical arc path segments to doubly-encode directionality.
+ function tick() {
+ path.attr("d", function(d) {
+ var dx = d.target.x - d.source.x,
+ dy = d.target.y - d.source.y,
+ // dr = Math.sqrt(dx * dx + dy * dy);
+ dr = 0;
+ return "M" + d.source.x + "," + d.source.y + "A" + dr + "," + dr + " 0 0,1 " + d.target.x + "," + d.target.y;
+ });
+
+ circle.attr("transform", function(d) {
+ return "translate(" + d.x + "," + d.y + ")";
+ });
+
+ text.attr("transform", function(d) {
+ return "translate(" + d.x + "," + d.y + ")";
+ });
+
+ edgetext.attr("transform", function(d) {
+ return "translate(" +
+ (d.source.x + d.target.x)/2 + "," +
+ (d.source.y + d.target.y)/2 +
+ ")rotate(" +
+ (Math.atan2(d.target.y - d.source.y, d.target.x - d.source.x) * 180 / Math.PI) +
+ ")";
+ });
+ }
+
+})(jQuery);
+<% end %>
-<% content_for :head do %>
-<%= javascript_include_tag '/d3.v3.min.js' %>
+ <h1>Bootstrap starter template</h1>
+ <p>Use this document as a way to quick start any new project.<br> All you get is this message and a barebones HTML document.</p>
- <style type="text/css">
-
-path.link {
- fill: none;
- stroke: #666;
- stroke-width: 1.5px;
-}
-
-path.link.derived_from {
- stroke: green;
- stroke-dasharray: 0,4 1;
-}
-
-path.link.can_write {
- stroke: green;
-}
-
-path.link.member_of {
- stroke: blue;
- stroke-dasharray: 0,4 1;
-}
-
-path.link.created {
- stroke: red;
-}
-
-circle.node {
- fill: #ccc;
- stroke: #333;
- stroke-width: 1.5px;
-}
-
-edgetext {
- font: 12px sans-serif;
- pointer-events: none;
- text-align: center;
-}
-
-text {
- font: 12px sans-serif;
- pointer-events: none;
-}
-
-text.shadow {
- stroke: #fff;
- stroke-width: 3px;
- stroke-opacity: .8;
-}
-
- </style>
-<% end %>
-
-<% content_for :js do %>
-
-jQuery(function($){
-
- var links = <%= raw d3ify_links(@links).to_json %>;
-
- var nodes = {};
-
- // Compute the distinct nodes from the links.
- links.forEach(function(link) {
- link.source = nodes[link.source] || (nodes[link.source] = {name: link.source});
- link.target = nodes[link.target] || (nodes[link.target] = {name: link.target});
- });
-
- var fill_for = {'ldvyl': 'green',
- 'j58dm': 'red',
- '4zz18': 'blue'};
- jQuery.each(nodes, function(i, node) {
- var m = node.name.match(/-([a-z0-9]{5})-/)
- if (m)
- node.fill = fill_for[m[1]] || '#ccc';
- else if (node.name.match(/^[0-9a-f]{32}/))
- node.fill = fill_for['4zz18'];
- else
- node.fill = '#ccc';
- });
-
- var w = 960,
- h = 600;
-
- var force = d3.layout.force()
- .nodes(d3.values(nodes))
- .links(links)
- .size([w, h])
- .linkDistance(150)
- .charge(-300)
- .on("tick", tick)
- .start();
-
- var svg = d3.select("body").append("svg:svg")
- .attr("width", w)
- .attr("height", h);
-
- // Per-type markers, as they don't inherit styles.
- svg.append("svg:defs").selectAll("marker")
- .data(["member_of", "owner", "derived_from"])
- .enter().append("svg:marker")
- .attr("id", String)
- .attr("viewBox", "0 -5 10 10")
- .attr("refX", 15)
- .attr("refY", -1.5)
- .attr("markerWidth", 6)
- .attr("markerHeight", 6)
- .attr("orient", "auto")
- .append("svg:path")
- .attr("d", "M0,-5L10,0L0,5");
-
- var path = svg.append("svg:g").selectAll("path")
- .data(force.links())
- .enter().append("svg:path")
- .attr("class", function(d) { return "link " + d.type; })
- .attr("marker-end", function(d) { return "url(#" + d.type + ")"; });
-
- var circle = svg.append("svg:g").selectAll("circle")
- .data(force.nodes())
- .enter().append("svg:circle")
- .attr("r", 6)
- .style("fill", function(d) { return d.fill; })
- .call(force.drag);
-
- var text = svg.append("svg:g").selectAll("g")
- .data(force.nodes())
- .enter().append("svg:g");
-
- // A copy of the text with a thick white stroke for legibility.
- text.append("svg:text")
- .attr("x", 8)
- .attr("y", ".31em")
- .attr("class", "shadow")
- .text(function(d) { return d.name.replace(/^([0-9a-z]{5}-){2}/,''); });
-
- text.append("svg:text")
- .attr("x", 8)
- .attr("y", ".31em")
- .text(function(d) { return d.name.replace(/^([0-9a-z]{5}-){2}/,''); });
-
- var edgetext = svg.append("svg:g").selectAll("g")
- .data(force.links())
- .enter().append("svg:g");
-
- edgetext
- .append("svg:text")
- .attr("x","-5em")
- .attr("y","-0.2em")
- .text(function(d) { return d.type; });
-
- // Use elliptical arc path segments to doubly-encode directionality.
- function tick() {
- path.attr("d", function(d) {
- var dx = d.target.x - d.source.x,
- dy = d.target.y - d.source.y,
- // dr = Math.sqrt(dx * dx + dy * dy);
- dr = 0;
- return "M" + d.source.x + "," + d.source.y + "A" + dr + "," + dr + " 0 0,1 " + d.target.x + "," + d.target.y;
- });
-
- circle.attr("transform", function(d) {
- return "translate(" + d.x + "," + d.y + ")";
- });
-
- text.attr("transform", function(d) {
- return "translate(" + d.x + "," + d.y + ")";
- });
-
- edgetext.attr("transform", function(d) {
- return "translate(" +
- (d.source.x + d.target.x)/2 + "," +
- (d.source.y + d.target.y)/2 +
- ")rotate(" +
- (Math.atan2(d.target.y - d.source.y, d.target.x - d.source.x) * 180 / Math.PI) +
- ")";
- });
- }
-
-})(jQuery);
-<% end %>
+<p>foo
+</p>
<!DOCTYPE html>
<html>
<head>
+ <meta charset="utf-8">
<title>Vcffarm</title>
+ <meta name="viewport" content="width=device-width, initial-scale=1.0">
+ <meta name="description" content="">
+ <meta name="author" content="">
<%= stylesheet_link_tag "application", :media => "all" %>
<%= javascript_include_tag "application" %>
<%= csrf_meta_tags %>
<%= javascript_tag do %>
<%= yield :js %>
<% end %>
+ <style>
+ body {
+ padding-top: 60px; /* 60px to make the container go all the way to the bottom of the topbar */
+ }
+ </style>
</head>
<body>
-<%= yield %>
+ <div class="navbar navbar-inverse navbar-fixed-top">
+ <div class="navbar-inner">
+ <div class="container">
+ <a class="btn btn-navbar" data-toggle="collapse" data-target=".nav-collapse">
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ <span class="icon-bar"></span>
+ </a>
+ <a class="brand" href="#"><%= Rails.configuration.site_name rescue Rails.application.class.parent_name %></a>
+ <div class="nav-collapse collapse">
+ <ul class="nav">
+ <% [['Jobs', '/factory_jobs'],
+ ['Graph', '/collections/graph']].each do |nav| %>
+ <li<%= raw ' class="active"' if request.fullpath.index(nav[1]) %>><a href="<%= nav[1] %>"><%= nav[0] %></a></li>
+ <% end %>
+ </ul>
+ </div><!--/.nav-collapse -->
+ </div>
+ </div>
+ </div>
+
+ <div class="container">
+
+ <%= yield %>
+
+ </div> <!-- /container -->
</body>
</html>
config.data_import_dir = '/data/vcffarm-upload'
config.secret_token = File.read('config/.secret_token') if File.exist? 'config/.secret_token'
+
+ config.site_name = 'vcffarm.example.com'
end
config.accept_api_token = {}
config.vcf_pipeline_uuid = '9ujm1-mxsvm-o62u4mdoxvs0ckp'
+
+ config.site_name = 'vcffarm.example.com'
end
config.accept_api_token = {}
config.vcf_pipeline_uuid = '9ujm1-mxsvm-o62u4mdoxvs0ckp'
+
+ config.site_name = 'vcffarm.example.com'
end
resources :links
+ match '/collections/graph' => 'collections#graph'
resources :collections
projects / arvados.git / commitdiff