Download bwa and samtools from a self-hosted mirror, sf.net downloads

are way too unreliable.

No issue #

diff --git a/docker/java-bwa-samtools/Dockerfile b/docker/java-bwa-samtools/Dockerfile
index 5dae9a628a88d68ab454cc1e63264ab9ebe711d3..713ef2116a6fe7a7936ce6abc34877f3fc3de348 100644 (file)
--- a/docker/java-bwa-samtools/Dockerfile
+++ b/docker/java-bwa-samtools/Dockerfile
@@ -6,14 +6,14 @@ USER root
 RUN apt-get update -qq
 RUN apt-get install -qqy openjdk-7-jre-headless && \
     cd /tmp && \
-    curl --location http://downloads.sourceforge.net/project/bio-bwa/bwa-0.7.9a.tar.bz2 -o bwa-0.7.9a.tar.bz2 && \
+    curl --location http://cache.arvados.org/sourceforge.net/project/bio-bwa/bwa-0.7.9a.tar.bz2 -o bwa-0.7.9a.tar.bz2 && \
     tar xjf bwa-0.7.9a.tar.bz2 && \
     cd bwa-0.7.9a && \
     make && \
     (find . -executable -type f -print0 | xargs -0 -I {} mv {} /usr/local/bin) && \
     rm -r /tmp/bwa-0.7.9a* && \
     cd /tmp && \
-    curl --location http://downloads.sourceforge.net/project/samtools/samtools/0.1.19/samtools-0.1.19.tar.bz2 -o samtools-0.1.19.tar.bz2 && \
+    curl --location http://cache.arvados.org/sourceforge.net/project/samtools/samtools/0.1.19/samtools-0.1.19.tar.bz2 -o samtools-0.1.19.tar.bz2 && \
     tar xjf samtools-0.1.19.tar.bz2 && \
     cd samtools-0.1.19 && \
     make && \