.should('contain', 'Process retried 2 times');
});
});
+
+
+ it('displays IO parameters with keep links and previews', function() {
+ const testInputs = [
+ {
+ definition: {
+ "id": "#main/input_file",
+ "label": "Label Description",
+ "type": "File"
+ },
+ input: {
+ "input_file": {
+ "basename": "input1.tar",
+ "class": "File",
+ "location": "keep:00000000000000000000000000000000+01/input1.tar",
+ "secondaryFiles": [
+ {
+ "basename": "input1-2.txt",
+ "class": "File",
+ "location": "keep:00000000000000000000000000000000+01/input1-2.txt"
+ },
+ {
+ "basename": "input1-3.txt",
+ "class": "File",
+ "location": "keep:00000000000000000000000000000000+01/input1-3.txt"
+ },
+ {
+ "basename": "input1-4.txt",
+ "class": "File",
+ "location": "keep:00000000000000000000000000000000+01/input1-4.txt"
+ }
+ ]
+ }
+ }
+ },
+ {
+ definition: {
+ "id": "#main/input_dir",
+ "doc": "Doc Description",
+ "type": "Directory"
+ },
+ input: {
+ "input_dir": {
+ "basename": "11111111111111111111111111111111+01",
+ "class": "Directory",
+ "location": "keep:11111111111111111111111111111111+01"
+ }
+ }
+ },
+ {
+ definition: {
+ "id": "#main/input_bool",
+ "doc": ["Doc desc 1", "Doc desc 2"],
+ "type": "boolean"
+ },
+ input: {
+ "input_bool": true,
+ }
+ },
+ {
+ definition: {
+ "id": "#main/input_int",
+ "type": "int"
+ },
+ input: {
+ "input_int": 1,
+ }
+ },
+ {
+ definition: {
+ "id": "#main/input_long",
+ "type": "long"
+ },
+ input: {
+ "input_long" : 1,
+ }
+ },
+ {
+ definition: {
+ "id": "#main/input_float",
+ "type": "float"
+ },
+ input: {
+ "input_float": 1.5,
+ }
+ },
+ {
+ definition: {
+ "id": "#main/input_double",
+ "type": "double"
+ },
+ input: {
+ "input_double": 1.3,
+ }
+ },
+ {
+ definition: {
+ "id": "#main/input_string",
+ "type": "string"
+ },
+ input: {
+ "input_string": "Hello World",
+ }
+ },
+ {
+ definition: {
+ "id": "#main/input_file_array",
+ "type": {
+ "items": "File",
+ "type": "array"
+ }
+ },
+ input: {
+ "input_file_array": [
+ {
+ "basename": "input2.tar",
+ "class": "File",
+ "location": "keep:00000000000000000000000000000000+02/input2.tar"
+ },
+ {
+ "basename": "input3.tar",
+ "class": "File",
+ "location": "keep:00000000000000000000000000000000+03/input3.tar",
+ "secondaryFiles": [
+ {
+ "basename": "input3-2.txt",
+ "class": "File",
+ "location": "keep:00000000000000000000000000000000+03/input3-2.txt"
+ }
+ ]
+ }
+ ]
+ }
+ },
+ {
+ definition: {
+ "id": "#main/input_dir_array",
+ "type": {
+ "items": "Directory",
+ "type": "array"
+ }
+ },
+ input: {
+ "input_dir_array": [
+ {
+ "basename": "11111111111111111111111111111111+02",
+ "class": "Directory",
+ "location": "keep:11111111111111111111111111111111+02"
+ },
+ {
+ "basename": "11111111111111111111111111111111+03",
+ "class": "Directory",
+ "location": "keep:11111111111111111111111111111111+03"
+ }
+ ]
+ }
+ },
+ {
+ definition: {
+ "id": "#main/input_int_array",
+ "type": {
+ "items": "int",
+ "type": "array"
+ }
+ },
+ input: {
+ "input_int_array": [
+ 1,
+ 3,
+ 5
+ ]
+ }
+ },
+ {
+ definition: {
+ "id": "#main/input_long_array",
+ "type": {
+ "items": "long",
+ "type": "array"
+ }
+ },
+ input: {
+ "input_long_array": [
+ 10,
+ 20
+ ]
+ }
+ },
+ {
+ definition: {
+ "id": "#main/input_float_array",
+ "type": {
+ "items": "float",
+ "type": "array"
+ }
+ },
+ input: {
+ "input_float_array": [
+ 10.2,
+ 10.4,
+ 10.6
+ ]
+ }
+ },
+ {
+ definition: {
+ "id": "#main/input_double_array",
+ "type": {
+ "items": "double",
+ "type": "array"
+ }
+ },
+ input: {
+ "input_double_array": [
+ 20.1,
+ 20.2,
+ 20.3
+ ]
+ }
+ },
+ {
+ definition: {
+ "id": "#main/input_string_array",
+ "type": {
+ "items": "string",
+ "type": "array"
+ }
+ },
+ input: {
+ "input_string_array": [
+ "Hello",
+ "World",
+ "!"
+ ]
+ }
+ }
+ ];
+
+ const testOutputs = [
+ {
+ definition: {
+ "id": "#main/output_file",
+ "label": "Label Description",
+ "type": "File"
+ },
+ output: {
+ "output_file": {
+ "basename": "cat.png",
+ "class": "File",
+ "location": "cat.png"
+ }
+ }
+ },
+ {
+ definition: {
+ "id": "#main/output_file_with_secondary",
+ "doc": "Doc Description",
+ "type": "File"
+ },
+ output: {
+ "output_file_with_secondary": {
+ "basename": "main.dat",
+ "class": "File",
+ "location": "main.dat",
+ "secondaryFiles": [
+ {
+ "basename": "secondary.dat",
+ "class": "File",
+ "location": "secondary.dat"
+ },
+ {
+ "basename": "secondary2.dat",
+ "class": "File",
+ "location": "secondary2.dat"
+ }
+ ]
+ }
+ }
+ },
+ {
+ definition: {
+ "id": "#main/output_dir",
+ "doc": ["Doc desc 1", "Doc desc 2"],
+ "type": "Directory"
+ },
+ output: {
+ "output_dir": {
+ "basename": "outdir1",
+ "class": "Directory",
+ "location": "outdir1"
+ }
+ }
+ },
+ {
+ definition: {
+ "id": "#main/output_bool",
+ "type": "boolean"
+ },
+ output: {
+ "output_bool": true
+ }
+ },
+ {
+ definition: {
+ "id": "#main/output_int",
+ "type": "int"
+ },
+ output: {
+ "output_int": 1
+ }
+ },
+ {
+ definition: {
+ "id": "#main/output_long",
+ "type": "long"
+ },
+ output: {
+ "output_long": 1
+ }
+ },
+ {
+ definition: {
+ "id": "#main/output_float",
+ "type": "float"
+ },
+ output: {
+ "output_float": 100.5
+ }
+ },
+ {
+ definition: {
+ "id": "#main/output_double",
+ "type": "double"
+ },
+ output: {
+ "output_double": 100.3
+ }
+ },
+ {
+ definition: {
+ "id": "#main/output_string",
+ "type": "string"
+ },
+ output: {
+ "output_string": "Hello output"
+ }
+ },
+ {
+ definition: {
+ "id": "#main/output_file_array",
+ "type": {
+ "items": "File",
+ "type": "array"
+ }
+ },
+ output: {
+ "output_file_array": [
+ {
+ "basename": "output2.tar",
+ "class": "File",
+ "location": "output2.tar"
+ },
+ {
+ "basename": "output3.tar",
+ "class": "File",
+ "location": "output3.tar"
+ }
+ ]
+ }
+ },
+ {
+ definition: {
+ "id": "#main/output_dir_array",
+ "type": {
+ "items": "Directory",
+ "type": "array"
+ }
+ },
+ output: {
+ "output_dir_array": [
+ {
+ "basename": "outdir2",
+ "class": "Directory",
+ "location": "outdir2"
+ },
+ {
+ "basename": "outdir3",
+ "class": "Directory",
+ "location": "outdir3"
+ }
+ ]
+ }
+ },
+ {
+ definition: {
+ "id": "#main/output_int_array",
+ "type": {
+ "items": "int",
+ "type": "array"
+ }
+ },
+ output: {
+ "output_int_array": [
+ 10,
+ 11,
+ 12
+ ]
+ }
+ },
+ {
+ definition: {
+ "id": "#main/output_long_array",
+ "type": {
+ "items": "long",
+ "type": "array"
+ }
+ },
+ output: {
+ "output_long_array": [
+ 51,
+ 52
+ ]
+ }
+ },
+ {
+ definition: {
+ "id": "#main/output_float_array",
+ "type": {
+ "items": "float",
+ "type": "array"
+ }
+ },
+ output: {
+ "output_float_array": [
+ 100.2,
+ 100.4,
+ 100.6
+ ]
+ }
+ },
+ {
+ definition: {
+ "id": "#main/output_double_array",
+ "type": {
+ "items": "double",
+ "type": "array"
+ }
+ },
+ output: {
+ "output_double_array": [
+ 100.1,
+ 100.2,
+ 100.3
+ ]
+ }
+ },
+ {
+ definition: {
+ "id": "#main/output_string_array",
+ "type": {
+ "items": "string",
+ "type": "array"
+ }
+ },
+ output: {
+ "output_string_array": [
+ "Hello",
+ "Output",
+ "!"
+ ]
+ }
+ }
+ ];
+
+ const verifyParameter = (name, doc, val) => {
+ cy.get('table tr').contains(name).parents('tr').within(() => {
+ doc && cy.contains(doc);
+ val && cy.contains(val);
+ });
+ };
+
+ const verifyImage = (name, url) => {
+ cy.get('table tr').contains(name).parents('tr').within(() => {
+ cy.get('[alt="Inline Preview"]')
+ .should('be.visible')
+ .and(($img) => {
+ expect($img[0].naturalWidth).to.be.greaterThan(0);
+ expect($img[0].src).contains(url);
+ })
+ });
+ }
+
+ // Create output collection for real files
+ cy.createCollection(adminUser.token, {
+ name: `Test collection ${Math.floor(Math.random() * 999999)}`,
+ owner_uuid: activeUser.user.uuid,
+ }).then((testOutputCollection) => {
+ cy.loginAs(activeUser);
+
+ cy.goToPath(`/collections/${testOutputCollection.uuid}`);
+
+ cy.get('[data-cy=upload-button]').click();
+
+ cy.fixture('files/cat.png', 'base64').then(content => {
+ cy.get('[data-cy=drag-and-drop]').upload(content, 'cat.png');
+ cy.get('[data-cy=form-submit-btn]').click();
+ cy.waitForDom().get('[data-cy=form-submit-btn]').should('not.exist');
+ // Confirm final collection state.
+ cy.get('[data-cy=collection-files-panel]')
+ .contains('cat.png').should('exist');
+ });
+
+ cy.getCollection(activeUser.token, testOutputCollection.uuid).as('testOutputCollection');
+ });
+
+ // Get updated collection pdh
+ cy.getAll('@testOutputCollection').then(([testOutputCollection]) => {
+ // Add output uuid and inputs to container request
+ cy.intercept({method: 'GET', url: '**/arvados/v1/container_requests/*'}, (req) => {
+ req.reply((res) => {
+ res.body.output_uuid = testOutputCollection.uuid;
+ res.body.mounts["/var/lib/cwl/cwl.input.json"] = {
+ content: testInputs.map((param) => (param.input)).reduce((acc, val) => (Object.assign(acc, val)), {})
+ };
+ res.body.mounts["/var/lib/cwl/workflow.json"] = {
+ content: {
+ $graph: [{
+ id: "#main",
+ inputs: testInputs.map((input) => (input.definition)),
+ outputs: testOutputs.map((output) => (output.definition))
+ }]
+ }
+ };
+ });
+ });
+
+ // Stub fake output collection
+ cy.intercept({method: 'GET', url: `**/arvados/v1/collections/${testOutputCollection.uuid}*`}, {
+ statusCode: 200,
+ body: {
+ uuid: testOutputCollection.uuid,
+ portable_data_hash: testOutputCollection.portable_data_hash,
+ }
+ });
+
+ // Stub fake output json
+ cy.intercept({method: 'GET', url: '**/c%3Dzzzzz-4zz18-zzzzzzzzzzzzzzz/cwl.output.json'}, {
+ statusCode: 200,
+ body: testOutputs.map((param) => (param.output)).reduce((acc, val) => (Object.assign(acc, val)), {})
+ });
+
+ // Stub webdav response, points to output json
+ cy.intercept({method: 'PROPFIND', url: '*'}, {
+ fixture: 'webdav-propfind-outputs.xml',
+ });
+ });
+
+ createContainerRequest(
+ activeUser,
+ 'test_container_request',
+ 'arvados/jobs',
+ ['echo', 'hello world'],
+ false, 'Committed')
+ .as('containerRequest');
+
+ cy.getAll('@containerRequest', '@testOutputCollection').then(function([containerRequest, testOutputCollection]) {
+ cy.goToPath(`/processes/${containerRequest.uuid}`);
+ cy.get('[data-cy=process-io-card] h6').contains('Inputs')
+ .parents('[data-cy=process-io-card]').within(() => {
+ cy.wait(2000);
+ cy.waitForDom();
+ verifyParameter('input_file', "Label Description", 'keep:00000000000000000000000000000000+01/input1.tar');
+ verifyParameter('input_file', "Label Description", 'keep:00000000000000000000000000000000+01/input1-2.txt');
+ verifyParameter('input_file', "Label Description", 'keep:00000000000000000000000000000000+01/input1-3.txt');
+ verifyParameter('input_file', "Label Description", 'keep:00000000000000000000000000000000+01/input1-4.txt');
+ verifyParameter('input_dir', "Doc Description", 'keep:11111111111111111111111111111111+01/');
+ verifyParameter('input_bool', "Doc desc 1, Doc desc 2", 'true');
+ verifyParameter('input_int', null, '1');
+ verifyParameter('input_long', null, '1');
+ verifyParameter('input_float', null, '1.5');
+ verifyParameter('input_double', null, '1.3');
+ verifyParameter('input_string', null, 'Hello World');
+ verifyParameter('input_file_array', null, 'keep:00000000000000000000000000000000+02/input2.tar');
+ verifyParameter('input_file_array', null, 'keep:00000000000000000000000000000000+03/input3.tar');
+ verifyParameter('input_file_array', null, 'keep:00000000000000000000000000000000+03/input3-2.txt');
+ verifyParameter('input_dir_array', null, 'keep:11111111111111111111111111111111+02/');
+ verifyParameter('input_dir_array', null, 'keep:11111111111111111111111111111111+03/');
+ verifyParameter('input_int_array', null, '1, 3, 5');
+ verifyParameter('input_long_array', null, '10, 20');
+ verifyParameter('input_float_array', null, '10.2, 10.4, 10.6');
+ verifyParameter('input_double_array', null, '20.1, 20.2, 20.3');
+ verifyParameter('input_string_array', null, 'Hello, World, !');
+ });
+ cy.get('[data-cy=process-io-card] h6').contains('Outputs')
+ .parents('[data-cy=process-io-card]').within((ctx) => {
+ cy.get(ctx).scrollIntoView();
+ const outPdh = testOutputCollection.portable_data_hash;
+
+ verifyParameter('output_file', "Label Description", `keep:${outPdh}/cat.png`);
+ verifyImage('output_file', `/c=${outPdh}/cat.png`);
+ verifyParameter('output_file_with_secondary', "Doc Description", `keep:${outPdh}/main.dat`);
+ verifyParameter('output_file_with_secondary', "Doc Description", `keep:${outPdh}/secondary.dat`);
+ verifyParameter('output_file_with_secondary', "Doc Description", `keep:${outPdh}/secondary2.dat`);
+ verifyParameter('output_dir', "Doc desc 1, Doc desc 2", `keep:${outPdh}/outdir1`);
+ verifyParameter('output_bool', null, 'true');
+ verifyParameter('output_int', null, '1');
+ verifyParameter('output_long', null, '1');
+ verifyParameter('output_float', null, '100.5');
+ verifyParameter('output_double', null, '100.3');
+ verifyParameter('output_string', null, 'Hello output');
+ verifyParameter('output_file_array', null, `keep:${outPdh}/output2.tar`);
+ verifyParameter('output_file_array', null, `keep:${outPdh}/output3.tar`);
+ verifyParameter('output_dir_array', null, `keep:${outPdh}/outdir2`);
+ verifyParameter('output_dir_array', null, `keep:${outPdh}/outdir3`);
+ verifyParameter('output_int_array', null, '10, 11, 12');
+ verifyParameter('output_long_array', null, '51, 52');
+ verifyParameter('output_float_array', null, '100.2, 100.4, 100.6');
+ verifyParameter('output_double_array', null, '100.1, 100.2, 100.3');
+ verifyParameter('output_string_array', null, 'Hello, Output, !');
+ });
+ });
+ });
+
});
projects / arvados.git / commitdiff
