EOF
- EXITCODE=0
+ # Begin of user configuration
+
+ # set to --no-cache-dir to disable pip caching
+ CACHE_FLAG=
+
+ MAINTAINER="Ward Vandewege <wvandewege@veritasgenetics.com>"
+ VENDOR="Veritas Genetics, Inc."
+
+ # End of user configuration
+
DEBUG=${ARVADOS_DEBUG:-0}
+ EXITCODE=0
TARGET=debian8
COMMAND=
PYTHON2_INSTALL_LIB=lib/python$PYTHON2_VERSION/site-packages
PYTHON3_PACKAGE=$(rpm -qf "$(which python$PYTHON3_VERSION)" --queryformat '%{NAME}\n')
PYTHON3_PKG_PREFIX=$PYTHON3_PACKAGE
- PYTHON3_PREFIX=/opt/rh/python33/root/usr
+ PYTHON3_PREFIX=/opt/rh/rh-python35/root/usr
PYTHON3_INSTALL_LIB=lib/python$PYTHON3_VERSION/site-packages
export PYCURL_SSL_LIBRARY=nss
;;
perl Makefile.PL INSTALL_BASE=install >"$STDOUT_IF_DEBUG" && \
make install INSTALLDIRS=perl >"$STDOUT_IF_DEBUG" && \
fpm_build install/lib/=/usr/share libarvados-perl \
- "Curoverse, Inc." dir "$(version_from_git)" install/man/=/usr/share/man \
+ dir "$(version_from_git)" install/man/=/usr/share/man \
"$WORKSPACE/apache-2.0.txt=/usr/share/doc/libarvados-perl/apache-2.0.txt" && \
mv --no-clobber libarvados-perl*.$FORMAT "$WORKSPACE/packages/$TARGET/"
fi
cd "$SRC_BUILD_DIR"
PKG_VERSION=$(version_from_git)
cd $WORKSPACE/packages/$TARGET
- fpm_build $SRC_BUILD_DIR/=/usr/local/arvados/src arvados-src 'Curoverse, Inc.' 'dir' "$PKG_VERSION" "--exclude=usr/local/arvados/src/.git" "--url=https://arvados.org" "--license=GNU Affero General Public License, version 3.0" "--description=The Arvados source code" "--architecture=all"
+ fpm_build $SRC_BUILD_DIR/=/usr/local/arvados/src arvados-src 'dir' "$PKG_VERSION" "--exclude=usr/local/arvados/src/.git" "--url=https://arvados.org" "--license=GNU Affero General Public License, version 3.0" "--description=The Arvados source code" "--architecture=all"
rm -rf "$SRC_BUILD_DIR"
-
fi
)
"Arvados server daemons"
package_go_binary cmd/arvados-server arvados-controller \
"Arvados cluster controller daemon"
-# No package until #14325
-#package_go_binary cmd/arvados-server crunch-dispatch-cloud \
-# "Arvados cluster cloud dispatch"
+package_go_binary cmd/arvados-server crunch-dispatch-cloud \
+ "Arvados cluster cloud dispatch"
package_go_binary sdk/go/crunchrunner crunchrunner \
"Crunchrunner executes a command inside a container and uploads the output"
package_go_binary services/arv-git-httpd arvados-git-httpd \
package_go_binary tools/keep-exercise keep-exercise \
"Performance testing tool for Arvados Keep"
-
- # we need explicit debian_revision values in the dependencies for ruamel.yaml, because we have a package iteration
- # greater than zero. So we parse setup.py, get the ruamel.yaml dependencies, tell fpm not to automatically include
- # them in the package being built, and re-add them manually with an appropriate debian_revision value.
- # See #14552 for the reason for this (nasty) workaround. We use ${ruamel_depends[@]} in a few places further down
- # in this script.
- # Ward, 2018-11-28
- IFS=', ' read -r -a deps <<< `grep ruamel.yaml $WORKSPACE/sdk/python/setup.py |cut -f 3 -dl |sed -e "s/'//g"`
- declare -a ruamel_depends=()
- for i in ${deps[@]}; do
- i=`echo "$i" | sed -e 's!\([0-9]\)! \1!'`
- if [[ $i =~ .*\>.* ]]; then
- ruamel_depends+=(--depends "python-ruamel.yaml $i-1")
- elif [[ $i =~ .*\<.* ]]; then
- ruamel_depends+=(--depends "python-ruamel.yaml $i-9")
- else
- echo "Encountered ruamel dependency that I can't parse. Aborting..."
- exit 1
- fi
- done
-
-
# The Python SDK
- # Please resist the temptation to add --no-python-fix-name to the fpm call here
- # (which would remove the python- prefix from the package name), because this
- # package is a dependency of arvados-fuse, and fpm can not omit the python-
- # prefix from only one of the dependencies of a package... Maybe I could
- # whip up a patch and send it upstream, but that will be for another day. Ward,
- # 2014-05-15
- cd $WORKSPACE/packages/$TARGET
- rm -rf "$WORKSPACE/sdk/python/build"
- arvados_python_client_version=${ARVADOS_BUILDING_VERSION:-$(awk '($1 == "Version:"){print $2}' $WORKSPACE/sdk/python/arvados_python_client.egg-info/PKG-INFO)}
- test_package_presence ${PYTHON2_PKG_PREFIX}-arvados-python-client "$arvados_python_client_version" python
- if [[ "$?" == "0" ]]; then
+ fpm_build_virtualenv "arvados-python-client" "sdk/python"
+ fpm_build_virtualenv "arvados-python-client" "sdk/python" "python3"
- fpm_build $WORKSPACE/sdk/python "${PYTHON2_PKG_PREFIX}-arvados-python-client" 'Curoverse, Inc.' 'python' "$arvados_python_client_version" "--url=https://arvados.org" "--description=The Arvados Python SDK" --depends "${PYTHON2_PKG_PREFIX}-setuptools" --deb-recommends=git --python-disable-dependency ruamel.yaml "${ruamel_depends[@]}"
- fi
-
- # cwl-runner
- cd $WORKSPACE/packages/$TARGET
- rm -rf "$WORKSPACE/sdk/cwl/build"
- arvados_cwl_runner_version=${ARVADOS_BUILDING_VERSION:-$(awk '($1 == "Version:"){print $2}' $WORKSPACE/sdk/cwl/arvados_cwl_runner.egg-info/PKG-INFO)}
- declare -a iterargs=()
- if [[ -z "$ARVADOS_BUILDING_VERSION" ]]; then
- arvados_cwl_runner_iteration=4
- iterargs+=(--iteration $arvados_cwl_runner_iteration)
- else
- arvados_cwl_runner_iteration=
- fi
- test_package_presence ${PYTHON2_PKG_PREFIX}-arvados-cwl-runner "$arvados_cwl_runner_version" python "$arvados_cwl_runner_iteration"
- if [[ "$?" == "0" ]]; then
- fpm_build $WORKSPACE/sdk/cwl "${PYTHON2_PKG_PREFIX}-arvados-cwl-runner" 'Curoverse, Inc.' 'python' "$arvados_cwl_runner_version" "--url=https://arvados.org" "--description=The Arvados CWL runner" --depends "${PYTHON2_PKG_PREFIX}-setuptools" --depends "${PYTHON2_PKG_PREFIX}-subprocess32 >= 3.5.0" --depends "${PYTHON2_PKG_PREFIX}-pathlib2" --depends "${PYTHON2_PKG_PREFIX}-scandir" --python-disable-dependency ruamel.yaml "${ruamel_depends[@]}" "${iterargs[@]}"
- fi
-
- # schema_salad. This is a python dependency of arvados-cwl-runner,
- # but we can't use the usual PYTHONPACKAGES way to build this package due to the
- # intricacies of how version numbers get generated in setup.py: we need a specific version,
- # e.g. 1.7.20160316203940. If we don't explicitly list that version with the -v
- # argument to fpm, and instead specify it as schema_salad==1.7.20160316203940, we get
- # a package with version 1.7. That's because our gittagger hack is not being
- # picked up by self.distribution.get_version(), which is called from
- # https://github.com/jordansissel/fpm/blob/master/lib/fpm/package/pyfpm/get_metadata.py
- # by means of this command:
- #
- # python2.7 setup.py --command-packages=pyfpm get_metadata --output=metadata.json
- #
- # So we build this thing separately.
- #
- # Ward, 2016-03-17
- saladversion=$(cat "$WORKSPACE/sdk/cwl/setup.py" | grep schema-salad== | sed "s/.*==\(.*\)'.*/\1/")
- test_package_presence python-schema-salad "$saladversion" python 2
- if [[ "$?" == "0" ]]; then
- fpm_build schema_salad "" "" python $saladversion --depends "${PYTHON2_PKG_PREFIX}-lockfile >= 1:0.12.2-2" --depends "${PYTHON2_PKG_PREFIX}-avro = 1.8.1-2" --iteration 2
- fi
-
- # And for cwltool we have the same problem as for schema_salad. Ward, 2016-03-17
- cwltoolversion=$(cat "$WORKSPACE/sdk/cwl/setup.py" | grep cwltool== | sed "s/.*==\(.*\)'.*/\1/")
- test_package_presence python-cwltool "$cwltoolversion" python 3
- if [[ "$?" == "0" ]]; then
- fpm_build cwltool "" "" python $cwltoolversion --iteration 3 --python-disable-dependency ruamel.yaml "${ruamel_depends[@]}"
- fi
+ # Arvados cwl runner
+ fpm_build_virtualenv "arvados-cwl-runner" "sdk/cwl"
# The PAM module
- if [[ $TARGET =~ debian|ubuntu ]]; then
- cd $WORKSPACE/packages/$TARGET
- rm -rf "$WORKSPACE/sdk/pam/build"
- libpam_arvados_version=$(awk '($1 == "Version:"){print $2}' $WORKSPACE/sdk/pam/arvados_pam.egg-info/PKG-INFO)
- test_package_presence libpam-arvados "$libpam_arvados_version" python
- if [[ "$?" == "0" ]]; then
- fpm_build $WORKSPACE/sdk/pam libpam-arvados 'Curoverse, Inc.' 'python' "$libpam_arvados_version" "--url=https://arvados.org" "--description=PAM module for authenticating shell logins using Arvados API tokens" --depends libpam-python
- fi
- fi
+ fpm_build_virtualenv "libpam-arvados" "sdk/pam"
# The FUSE driver
- # Please see comment about --no-python-fix-name above; we stay consistent and do
- # not omit the python- prefix first.
- cd $WORKSPACE/packages/$TARGET
- rm -rf "$WORKSPACE/services/fuse/build"
- arvados_fuse_version=${ARVADOS_BUILDING_VERSION:-$(awk '($1 == "Version:"){print $2}' $WORKSPACE/services/fuse/arvados_fuse.egg-info/PKG-INFO)}
- test_package_presence "${PYTHON2_PKG_PREFIX}-arvados-fuse" "$arvados_fuse_version" python
- if [[ "$?" == "0" ]]; then
- fpm_build $WORKSPACE/services/fuse "${PYTHON2_PKG_PREFIX}-arvados-fuse" 'Curoverse, Inc.' 'python' "$arvados_fuse_version" "--url=https://arvados.org" "--description=The Keep FUSE driver" --depends "${PYTHON2_PKG_PREFIX}-setuptools"
- fi
+ fpm_build_virtualenv "arvados-fuse" "services/fuse"
# The node manager
- cd $WORKSPACE/packages/$TARGET
- rm -rf "$WORKSPACE/services/nodemanager/build"
- nodemanager_version=${ARVADOS_BUILDING_VERSION:-$(awk '($1 == "Version:"){print $2}' $WORKSPACE/services/nodemanager/arvados_node_manager.egg-info/PKG-INFO)}
- iteration="${ARVADOS_BUILDING_ITERATION:-1}"
- test_package_presence arvados-node-manager "$nodemanager_version" python "$iteration"
- if [[ "$?" == "0" ]]; then
- fpm_build $WORKSPACE/services/nodemanager arvados-node-manager 'Curoverse, Inc.' 'python' "$nodemanager_version" "--url=https://arvados.org" "--description=The Arvados node manager" --depends "${PYTHON2_PKG_PREFIX}-setuptools" --iteration "$iteration"
- fi
+ fpm_build_virtualenv "arvados-node-manager" "services/nodemanager"
# The Docker image cleaner
- cd $WORKSPACE/packages/$TARGET
- rm -rf "$WORKSPACE/services/dockercleaner/build"
- dockercleaner_version=${ARVADOS_BUILDING_VERSION:-$(awk '($1 == "Version:"){print $2}' $WORKSPACE/services/dockercleaner/arvados_docker_cleaner.egg-info/PKG-INFO)}
- iteration="${ARVADOS_BUILDING_ITERATION:-4}"
- test_package_presence arvados-docker-cleaner "$dockercleaner_version" python "$iteration"
- if [[ "$?" == "0" ]]; then
- fpm_build $WORKSPACE/services/dockercleaner arvados-docker-cleaner 'Curoverse, Inc.' 'python3' "$dockercleaner_version" "--url=https://arvados.org" "--description=The Arvados Docker image cleaner" --depends "${PYTHON3_PKG_PREFIX}-websocket-client = 0.37.0" --iteration "$iteration"
- fi
+ fpm_build_virtualenv "arvados-docker-cleaner" "services/dockercleaner" "python3"
# The Arvados crunchstat-summary tool
- cd $WORKSPACE/packages/$TARGET
- crunchstat_summary_version=${ARVADOS_BUILDING_VERSION:-$(awk '($1 == "Version:"){print $2}' $WORKSPACE/tools/crunchstat-summary/crunchstat_summary.egg-info/PKG-INFO)}
- iteration="${ARVADOS_BUILDING_ITERATION:-2}"
- test_package_presence "$PYTHON2_PKG_PREFIX"-crunchstat-summary "$crunchstat_summary_version" python "$iteration"
- if [[ "$?" == "0" ]]; then
- rm -rf "$WORKSPACE/tools/crunchstat-summary/build"
- fpm_build $WORKSPACE/tools/crunchstat-summary ${PYTHON2_PKG_PREFIX}-crunchstat-summary 'Curoverse, Inc.' 'python' "$crunchstat_summary_version" "--url=https://arvados.org" "--description=Crunchstat-summary reads Arvados Crunch log files and summarize resource usage" --iteration "$iteration"
- fi
-
- # Forked libcloud
- if test_package_presence "$PYTHON2_PKG_PREFIX"-apache-libcloud "$LIBCLOUD_PIN" python 2
- then
- LIBCLOUD_DIR=$(mktemp -d)
- (
- cd $LIBCLOUD_DIR
- git clone $DASHQ_UNLESS_DEBUG https://github.com/curoverse/libcloud.git .
- git checkout $DASHQ_UNLESS_DEBUG apache-libcloud-$LIBCLOUD_PIN
- # libcloud is absurdly noisy without -q, so force -q here
- OLD_DASHQ_UNLESS_DEBUG=$DASHQ_UNLESS_DEBUG
- DASHQ_UNLESS_DEBUG=-q
- handle_python_package
- DASHQ_UNLESS_DEBUG=$OLD_DASHQ_UNLESS_DEBUG
- )
-
- # libcloud >= 2.3.0 now requires python-requests 2.4.3 or higher, otherwise
- # it throws
- # ImportError: No module named packages.urllib3.poolmanager
- # when loaded. We only see this problem on ubuntu1404, because that is our
- # only supported distribution that ships with a python-requests older than
- # 2.4.3.
- fpm_build $LIBCLOUD_DIR "$PYTHON2_PKG_PREFIX"-apache-libcloud "" python "" --iteration 2 --depends 'python-requests >= 2.4.3'
- rm -rf $LIBCLOUD_DIR
- fi
-
- # Python 2 dependencies
- declare -a PIP_DOWNLOAD_SWITCHES=(--no-deps)
- # Add --no-use-wheel if this pip knows it.
- pip install --no-use-wheel >/dev/null 2>&1
- case "$?" in
- 0) PIP_DOWNLOAD_SWITCHES+=(--no-use-wheel) ;;
- 1) ;;
- 2) ;;
- *) echo "WARNING: 'pip install --no-use-wheel' test returned unknown exit code $?" ;;
- esac
-
- while read -r line || [[ -n "$line" ]]; do
- # echo "Text read from file: $line"
- if [[ "$line" =~ ^# ]]; then
- continue
- fi
- IFS='|'; arr=($line); unset IFS
-
- dist=${arr[0]}
-
- IFS=',';dists=($dist); unset IFS
-
- MATCH=0
- for d in "${dists[@]}"; do
- if [[ "$d" == "$TARGET" ]] || [[ "$d" == "all" ]]; then
- MATCH=1
- fi
- done
-
- if [[ "$MATCH" != "1" ]]; then
- continue
- fi
- name=${arr[1]}
- version=${arr[2]}
- iteration=${arr[3]}
- pkgtype=${arr[4]}
- arch=${arr[5]}
- extra=${arr[6]}
- declare -a 'extra_arr=('"$extra"')'
-
- if [[ "$FORMAT" == "rpm" ]]; then
- if [[ "$arch" == "all" ]]; then
- arch="noarch"
- fi
- if [[ "$arch" == "amd64" ]]; then
- arch="x86_64"
- fi
- fi
-
- if [[ "$pkgtype" == "python" ]]; then
- outname=$(echo "$name" | sed -e 's/^python-//' -e 's/_/-/g' -e "s/^/${PYTHON2_PKG_PREFIX}-/")
- else
- outname=$(echo "$name" | sed -e 's/^python-//' -e 's/_/-/g' -e "s/^/${PYTHON3_PKG_PREFIX}-/")
- fi
-
- if [[ -n "$ONLY_BUILD" ]] && [[ "$outname" != "$ONLY_BUILD" ]] ; then
- continue
- fi
-
- case "$name" in
- httplib2|google-api-python-client)
- test_package_presence $outname $version $pkgtype $iteration $arch
- if [[ "$?" == "0" ]]; then
- # Work around 0640 permissions on some package files.
- # See #7591 and #7991.
- pyfpm_workdir=$(mktemp --tmpdir -d pyfpm-XXXXXX) && (
- set -e
- cd "$pyfpm_workdir"
- PIP_VERSION=`python$PYTHON2_VERSION -c "import pip; print(pip.__version__)" |cut -f1 -d.`
- if (( $PIP_VERSION < 8 )); then
- pip install "${PIP_DOWNLOAD_SWITCHES[@]}" --download . "$name==$version"
- else
- pip download --no-deps --no-binary :all: "$name==$version"
- fi
- # Sometimes pip gives us a tarball, sometimes a zip file...
- DOWNLOADED=`ls $name-*`
- [[ "$DOWNLOADED" =~ ".tar" ]] && tar -xf $DOWNLOADED
- [[ "$DOWNLOADED" =~ ".zip" ]] && unzip $DOWNLOADED
- cd "$name"-*/
- "python$PYTHON2_VERSION" setup.py $DASHQ_UNLESS_DEBUG egg_info build
- chmod -R go+rX .
- set +e
- fpm_build . "$outname" "" "$pkgtype" "$version" --iteration "$iteration" "${extra_arr[@]}"
- # The upload step uses the package timestamp to determine
- # if it is new. --no-clobber plays nice with that.
- mv --no-clobber "$outname"*.$FORMAT "$WORKSPACE/packages/$TARGET"
- )
- if [ 0 != "$?" ]; then
- echo "ERROR: $name build process failed"
- EXITCODE=1
- fi
- if [ -n "$pyfpm_workdir" ]; then
- rm -rf "$pyfpm_workdir"
- fi
- fi
- ;;
- *)
- test_package_presence $outname $version $pkgtype $iteration $arch
- if [[ "$?" == "0" ]]; then
- fpm_build "$name" "$outname" "" "$pkgtype" "$version" --iteration "$iteration" "${extra_arr[@]}"
- fi
- ;;
- esac
-
- done <`dirname "$(readlink -f "$0")"`"/build.list"
+ fpm_build_virtualenv "crunchstat-summary" "tools/crunchstat-summary"
# Build the API server package
test_rails_package_presence arvados-api-server "$WORKSPACE/services/api"
projects / arvados.git / commitdiff