Input is "reads" not "input"
authorPeter Amstutz <peter.amstutz@curoverse.com>
Tue, 29 Jul 2014 20:38:16 +0000 (16:38 -0400)
committerPeter Amstutz <peter.amstutz@curoverse.com>
Tue, 29 Jul 2014 20:38:16 +0000 (16:38 -0400)
crunch_scripts/split-fastq.py

index a4444d0dd271bf3f79ef56a0d9f43e22d5e54eda..4c112fbcf0205370ad67d0d43ca2216137b7fff1 100755 (executable)
@@ -38,7 +38,7 @@ def put_manifest(manifest_text, sources=[]):
 
 # Look for paired reads
 
-inp = arvados.CollectionReader(arvados.getjobparam('input'))
+inp = arvados.CollectionReader(arvados.getjobparam('reads'))
 
 with open("/home/peter/manifest") as f:
     inp = arvados.CollectionReader(f.read())