type: 'boolean', required: false, default: false, description: 'Include past collection versions.',
}
})
- params.delete(:select)
params
end
attrs_to_update = resource_attrs.reject { |k, v|
[:kind, :etag, :href].index k
}.merge({async_permissions_update: true})
- @object.update_attributes!(attrs_to_update)
+ @object.update!(attrs_to_update)
@object.save!
render_accepted
else
request_filters = @filters
- klasses = [Group,
- Job, PipelineInstance, PipelineTemplate, ContainerRequest, Workflow,
- Collection,
- Human, Specimen, Trait]
+ klasses = [Group, ContainerRequest, Workflow, Collection]
table_names = Hash[klasses.collect { |k| [k, k.table_name] }]
end
end
+ # Check that any fields in @select are valid for at least one class
+ if @select
+ all_attributes = []
+ klasses.each do |klass|
+ all_attributes.concat klass.selectable_attributes
+ end
+ @select.each do |check|
+ if !all_attributes.include? check
+ raise ArgumentError.new "Invalid attribute '#{check}' in select"
+ end
+ end
+ end
+ any_selections = @select
+
included_by_uuid = {}
seen_last_class = false
+ error_by_class = {}
+ any_success = false
+
klasses.each do |klass|
# check if current klass is same as params['last_object_class']
seen_last_class = true if((params['count'].andand.==('none')) and
request_orders.andand.find { |r| r =~ /^#{klass.table_name}\./i || r !~ /\./ } ||
klass.default_orders.join(", ")
- @select = nil
+ @select = select_for_klass any_selections, klass, false
+
where_conds = filter_by_owner
- if klass == Collection
+ if klass == Collection && @select.nil?
@select = klass.selectable_attributes - ["manifest_text", "unsigned_manifest_text"]
elsif klass == Group
where_conds = where_conds.merge(group_class: ["project","filter"])
end
+ # Make signed manifest_text not selectable because controller
+ # currently doesn't know to sign it.
+ if @select
+ @select = @select - ["manifest_text"]
+ end
+
@filters = request_filters.map do |col, op, val|
if !col.index('.')
[col, op, val]
# Adjust the limit based on number of objects fetched so far
klass_limit = limit_all - all_objects.count
@limit = klass_limit
- apply_where_limit_order_params klass
+
+ begin
+ apply_where_limit_order_params klass
+ rescue ArgumentError => e
+ if e.inspect =~ /Invalid attribute '.+' for operator '.+' in filter/ or
+ e.inspect =~ /Invalid attribute '.+' for subproperty filter/
+ error_by_class[klass.name] = e
+ next
+ end
+ raise
+ else
+ any_success = true
+ end
# This actually fetches the objects
klass_object_list = object_list(model_class: klass)
end
end
+ # Only error out when every searchable object type errored out
+ if !any_success && error_by_class.size > 0
+ error_msg = error_by_class.collect do |klass, err|
+ "#{err} on object type #{klass}"
+ end.join("\n")
+ raise ArgumentError.new(error_msg)
+ end
+
if params["include"]
@extra_included = included_by_uuid.values
end