exclude: ["Rakefile", "tmp", "vendor"]
navbar:
- #start:
- #- Getting Started:
- #- start/index.html.textile.liquid
- #- Quickstart:
- #- start/getting_started/publicproject.html.textile.liquid
- #- start/getting_started/firstpipeline.html.textile.liquid
- #- Common Use Cases:
- #- start/getting_started/sharedata.html.textile.liquid
- #- Next Steps:
- #- start/getting_started/nextsteps.html.textile.liquid
-
userguide:
- Welcome:
- user/index.html.textile.liquid
- Running workflows at the command line:
- user/cwl/cwl-runner.html.textile.liquid
- user/cwl/cwl-run-options.html.textile.liquid
- - user/topics/running-pipeline-command-line.html.textile.liquid
- - user/topics/arv-run.html.textile.liquid
+ # - user/topics/running-pipeline-command-line.html.textile.liquid
+ # - user/topics/arv-run.html.textile.liquid
- Working with git repositories:
- user/tutorials/add-new-repository.html.textile.liquid
- user/tutorials/git-arvados-guide.html.textile.liquid
- user/cwl/cwl-style.html.textile.liquid
- user/cwl/cwl-extensions.html.textile.liquid
- user/topics/arv-docker.html.textile.liquid
- - user/tutorials/running-external-program.html.textile.liquid
- - user/topics/crunch-tools-overview.html.textile.liquid
- - user/tutorials/tutorial-firstscript.html.textile.liquid
- - user/tutorials/tutorial-submit-job.html.textile.liquid
- - user/topics/tutorial-parallel.html.textile.liquid
- - Develop a web service:
- - user/topics/arv-web.html.textile.liquid
+ # - user/tutorials/running-external-program.html.textile.liquid
+ # - user/topics/crunch-tools-overview.html.textile.liquid
+ # - user/tutorials/tutorial-firstscript.html.textile.liquid
+ # - user/tutorials/tutorial-submit-job.html.textile.liquid
+ # - user/topics/tutorial-parallel.html.textile.liquid
- Reference:
- user/reference/cookbook.html.textile.liquid
- - user/topics/run-command.html.textile.liquid
- - user/reference/job-pipeline-ref.html.textile.liquid
- - user/examples/crunch-examples.html.textile.liquid
- - Admin tools:
- - user/topics/arvados-sync-groups.html.textile.liquid
- - admin/change-account-owner.html.textile.liquid
- - admin/merge-remote-account.html.textile.liquid
- - Query the metadata database:
- - user/topics/tutorial-trait-search.html.textile.liquid
+ # - user/topics/run-command.html.textile.liquid
+ # - user/reference/job-pipeline-ref.html.textile.liquid
+ # - user/examples/crunch-examples.html.textile.liquid
+ #- Query the metadata database:
+ # - user/topics/tutorial-trait-search.html.textile.liquid
- Arvados License:
- user/copying/copying.html.textile.liquid
- user/copying/agpl-3.0.html
- sdk/python/example.html.textile.liquid
- sdk/python/python.html.textile.liquid
- sdk/python/crunch-utility-libraries.html.textile.liquid
+ - sdk/python/arvados-fuse.html.textile.liquid
- sdk/python/events.html.textile.liquid
- sdk/python/cookbook.html.textile.liquid
- CLI:
- Go:
- sdk/go/index.html.textile.liquid
- sdk/go/example.html.textile.liquid
+ - R:
+ - sdk/R/index.html.md
+ - sdk/R/arvados/index.html.textile.liquid
- Perl:
- sdk/perl/index.html.textile.liquid
- sdk/perl/example.html.textile.liquid
- api/requests.html.textile.liquid
- api/methods.html.textile.liquid
- api/resources.html.textile.liquid
- - api/permission-model.html.textile.liquid
- - api/storage.html.textile.liquid
- - api/execution.html.textile.liquid
- Permission and authentication:
- api/methods/api_client_authorizations.html.textile.liquid
- api/methods/api_clients.html.textile.liquid
- api/methods/humans.html.textile.liquid
- api/methods/specimens.html.textile.liquid
- api/methods/traits.html.textile.liquid
+ architecture:
+ - Topics:
+ - architecture/index.html.textile.liquid
+ - api/storage.html.textile.liquid
+ - api/execution.html.textile.liquid
+ - api/permission-model.html.textile.liquid
+ admin:
+ - Topics:
+ - admin/index.html.textile.liquid
+ - install/cheat_sheet.html.textile.liquid
+ - user/topics/arvados-sync-groups.html.textile.liquid
+ - admin/merge-remote-account.html.textile.liquid
+ - admin/upgrading.html.textile.liquid
+ - install/migrate-docker19.html.textile.liquid
installguide:
- Overview:
- install/index.html.textile.liquid
- Jobs API support (deprecated):
- install/install-crunch-dispatch.html.textile.liquid
- install/install-compute-node.html.textile.liquid
- - Helpful hints:
- - install/copy_pipeline_from_curoverse.html.textile.liquid
- - install/cheat_sheet.html.textile.liquid
- - Migrating from Docker 1.9:
- - install/migrate-docker19.html.textile.liquid