X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/af17604c5a93830380fb50db93ce543926c116cf..3b585e2842d4ccb5bef499236cf0b8c5a389c063:/doc/_config.yml

diff --git a/doc/_config.yml b/doc/_config.yml
index 08b581c0d7..404b90f357 100644
--- a/doc/_config.yml
+++ b/doc/_config.yml
@@ -17,17 +17,6 @@ arvados_workbench_host: http://localhost
 exclude: ["Rakefile", "tmp", "vendor"]
 
 navbar:
-  #start:
-    #- Getting Started:
-      #- start/index.html.textile.liquid
-    #- Quickstart:
-      #- start/getting_started/publicproject.html.textile.liquid
-      #- start/getting_started/firstpipeline.html.textile.liquid
-    #- Common Use Cases:
-      #- start/getting_started/sharedata.html.textile.liquid
-    #- Next Steps:
-      #- start/getting_started/nextsteps.html.textile.liquid
-
   userguide:
     - Welcome:
       - user/index.html.textile.liquid
@@ -51,8 +40,8 @@ navbar:
     - Running workflows at the command line:
       - user/cwl/cwl-runner.html.textile.liquid
       - user/cwl/cwl-run-options.html.textile.liquid
-      - user/topics/running-pipeline-command-line.html.textile.liquid
-      - user/topics/arv-run.html.textile.liquid
+    #  - user/topics/running-pipeline-command-line.html.textile.liquid
+    #  - user/topics/arv-run.html.textile.liquid
     - Working with git repositories:
       - user/tutorials/add-new-repository.html.textile.liquid
       - user/tutorials/git-arvados-guide.html.textile.liquid
@@ -62,24 +51,18 @@ navbar:
       - user/cwl/cwl-style.html.textile.liquid
       - user/cwl/cwl-extensions.html.textile.liquid
       - user/topics/arv-docker.html.textile.liquid
-      - user/tutorials/running-external-program.html.textile.liquid
-      - user/topics/crunch-tools-overview.html.textile.liquid
-      - user/tutorials/tutorial-firstscript.html.textile.liquid
-      - user/tutorials/tutorial-submit-job.html.textile.liquid
-      - user/topics/tutorial-parallel.html.textile.liquid
-    - Develop a web service:
-      - user/topics/arv-web.html.textile.liquid
+    #  - user/tutorials/running-external-program.html.textile.liquid
+    #  - user/topics/crunch-tools-overview.html.textile.liquid
+    #  - user/tutorials/tutorial-firstscript.html.textile.liquid
+    #  - user/tutorials/tutorial-submit-job.html.textile.liquid
+    #  - user/topics/tutorial-parallel.html.textile.liquid
     - Reference:
       - user/reference/cookbook.html.textile.liquid
-      - user/topics/run-command.html.textile.liquid
-      - user/reference/job-pipeline-ref.html.textile.liquid
-      - user/examples/crunch-examples.html.textile.liquid
-    - Admin tools:
-      - user/topics/arvados-sync-groups.html.textile.liquid
-      - admin/change-account-owner.html.textile.liquid
-      - admin/merge-remote-account.html.textile.liquid
-    - Query the metadata database:
-      - user/topics/tutorial-trait-search.html.textile.liquid
+    #  - user/topics/run-command.html.textile.liquid
+    #  - user/reference/job-pipeline-ref.html.textile.liquid
+    #  - user/examples/crunch-examples.html.textile.liquid
+    #- Query the metadata database:
+    #  - user/topics/tutorial-trait-search.html.textile.liquid
     - Arvados License:
       - user/copying/copying.html.textile.liquid
       - user/copying/agpl-3.0.html
@@ -93,6 +76,7 @@ navbar:
       - sdk/python/example.html.textile.liquid
       - sdk/python/python.html.textile.liquid
       - sdk/python/crunch-utility-libraries.html.textile.liquid
+      - sdk/python/arvados-fuse.html.textile.liquid
       - sdk/python/events.html.textile.liquid
       - sdk/python/cookbook.html.textile.liquid
     - CLI:
@@ -103,6 +87,9 @@ navbar:
     - Go:
       - sdk/go/index.html.textile.liquid
       - sdk/go/example.html.textile.liquid
+    - R:
+      - sdk/R/index.html.md
+      - sdk/R/arvados/index.html.textile.liquid
     - Perl:
       - sdk/perl/index.html.textile.liquid
       - sdk/perl/example.html.textile.liquid
@@ -119,9 +106,6 @@ navbar:
       - api/requests.html.textile.liquid
       - api/methods.html.textile.liquid
       - api/resources.html.textile.liquid
-      - api/permission-model.html.textile.liquid
-      - api/storage.html.textile.liquid
-      - api/execution.html.textile.liquid
     - Permission and authentication:
       - api/methods/api_client_authorizations.html.textile.liquid
       - api/methods/api_clients.html.textile.liquid
@@ -152,6 +136,20 @@ navbar:
       - api/methods/humans.html.textile.liquid
       - api/methods/specimens.html.textile.liquid
       - api/methods/traits.html.textile.liquid
+  architecture:
+    - Topics:
+      - architecture/index.html.textile.liquid
+      - api/storage.html.textile.liquid
+      - api/execution.html.textile.liquid
+      - api/permission-model.html.textile.liquid
+  admin:
+    - Topics:
+      - admin/index.html.textile.liquid
+      - install/cheat_sheet.html.textile.liquid
+      - user/topics/arvados-sync-groups.html.textile.liquid
+      - admin/merge-remote-account.html.textile.liquid
+      - admin/upgrading.html.textile.liquid
+      - install/migrate-docker19.html.textile.liquid
   installguide:
     - Overview:
       - install/index.html.textile.liquid
@@ -183,8 +181,3 @@ navbar:
     - Jobs API support (deprecated):
       - install/install-crunch-dispatch.html.textile.liquid
       - install/install-compute-node.html.textile.liquid
-    - Helpful hints:
-      - install/copy_pipeline_from_curoverse.html.textile.liquid
-      - install/cheat_sheet.html.textile.liquid
-    - Migrating from Docker 1.9:
-      - install/migrate-docker19.html.textile.liquid