18723: Use setuptools console entrypoints, fix dev-jobs.dockerfile

[arvados.git] / sdk / cwl / arvados_cwl / __init__.py

diff --git a/sdk/cwl/arvados_cwl/__init__.py b/sdk/cwl/arvados_cwl/__init__.py
index 2e491fe5ba80e0dc66d6fc69fd9d3b2df84ff895..734945c0f7ccb707258ab60be52107195afff0e0 100644 (file)
--- a/sdk/cwl/arvados_cwl/__init__.py
+++ b/sdk/cwl/arvados_cwl/__init__.py
@@ -179,7 +179,9 @@ def arg_parser():  # type: () -> argparse.ArgumentParser
                         help="Enable loading and running development versions "
                              "of the CWL standards.", default=False)
     parser.add_argument('--storage-classes', default="default",
-                        help="Specify comma separated list of storage classes to be used when saving workflow output to Keep.")
+                        help="Specify comma separated list of storage classes to be used when saving final workflow output to Keep.")
+    parser.add_argument('--intermediate-storage-classes', default="default",
+                        help="Specify comma separated list of storage classes to be used when saving intermediate workflow output to Keep.")
 
     parser.add_argument("--intermediate-output-ttl", type=int, metavar="N",
                         help="If N > 0, intermediate output collections will be trashed N seconds after creation.  Default is 0 (don't trash).",
@@ -246,24 +248,27 @@ def add_arv_hints():
         "http://commonwl.org/cwltool#LoadListingRequirement",
         "http://arvados.org/cwl#IntermediateOutput",
         "http://arvados.org/cwl#ReuseRequirement",
-        "http://arvados.org/cwl#ClusterTarget"
+        "http://arvados.org/cwl#ClusterTarget",
+        "http://arvados.org/cwl#OutputStorageClass",
+        "http://arvados.org/cwl#ProcessProperties",
+        "http://commonwl.org/cwltool#CUDARequirement"
     ])
 
 def exit_signal_handler(sigcode, frame):
     logger.error(str(u"Caught signal {}, exiting.").format(sigcode))
     sys.exit(-sigcode)
 
-def main(args, stdout, stderr, api_client=None, keep_client=None,
+def main(args=sys.argv[1:],
+         stdout=sys.stdout,
+         stderr=sys.stderr,
+         api_client=None,
+         keep_client=None,
          install_sig_handlers=True):
     parser = arg_parser()
 
     job_order_object = None
     arvargs = parser.parse_args(args)
 
-    if len(arvargs.storage_classes.strip().split(',')) > 1:
-        logger.error(str(u"Multiple storage classes are not supported currently."))
-        return 1
-
     arvargs.use_container = True
     arvargs.relax_path_checks = True
     arvargs.print_supported_versions = False
@@ -301,7 +306,7 @@ def main(args, stdout, stderr, api_client=None, keep_client=None,
             api_client.users().current().execute()
         if keep_client is None:
             keep_client = arvados.keep.KeepClient(api_client=api_client, num_retries=4)
-        executor = ArvCwlExecutor(api_client, arvargs, keep_client=keep_client, num_retries=4)
+        executor = ArvCwlExecutor(api_client, arvargs, keep_client=keep_client, num_retries=4, stdout=stdout)
     except WorkflowException as e:
         logger.error(e, exc_info=(sys.exc_info()[1] if arvargs.debug else False))
         return 1