- job: null
output:
- out: null
+ "out": {
+ "location": "hello.out",
+ "class": "File",
+ "checksum": "sha1$ec5d3976351abab45a483a49ce714a8430cb203a",
+ "size": 24
+ }
tool: 13976-keepref-wf.cwl
doc: "Test issue 13976"
tool: wf/runin-reqs-wf4.cwl
doc: "RunInSingleContainer discovers static resource request in subworkflow steps"
+- job: null
+ output:
+ out: null
+ tool: wf/runin-reqs-wf5.cwl
+ doc: "RunInSingleContainer has minimum 128 MiB RAM"
+
- job: secondaryFiles/inp3.yml
output: {}
tool: secondaryFiles/example1.cwl
output:
out: null
tool: wf-defaults/wf4.cwl
- doc: default in embedded subworkflow missing 'id' field
+ doc: default in embedded subworkflow missing 'id' field, v1.0
should_fail: true
+- job: null
+ output:
+ out: null
+ tool: wf-defaults/wf8.cwl
+ doc: default in embedded subworkflow missing 'id' field, v1.1
+ should_fail: false
+
- job: null
output:
out: null
}
tool: 15241-writable-dir.cwl
doc: Test for writable collections
+
+- job: badkeep.yml
+ output: {}
+ should_fail: true
+ tool: 15295-bad-keep-ref.cwl
+ doc: Test checking for invalid keepref
+
+- job: listing-job.yml
+ output: {
+ "out": {
+ "class": "File",
+ "location": "output.txt",
+ "size": 5,
+ "checksum": "sha1$724ba28f4a9a1b472057ff99511ed393a45552e1"
+ }
+ }
+ tool: 16169-no-listing-hint.cwl
+ doc: "Test cwltool:LoadListingRequirement propagation"
+
+- job: hello.yml
+ output:
+ "out": {
+ "location": "hello.out",
+ "class": "File",
+ "checksum": "sha1$ec5d3976351abab45a483a49ce714a8430cb203a",
+ "size": 24
+ }
+ tool: 16377-missing-default.cwl
+ doc: "Test issue 16377 - missing default fails even when it should be overridden by valid input"
+
+- job: hello.yml
+ output:
+ "out":
+ "checksum": "sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15"
+ "class": "File"
+ "location": "foo.txt"
+ "size": 4
+ tool: 17267-broken-schemas.cwl
+ doc: "Test issue 17267 - inaccessible $schemas URL is not a fatal error"
+
+- job: null
+ output: {}
+ tool: wf/trick_defaults2.cwl
+ doc: "Test issue 17462 - secondary file objects on file defaults are not resolved"
+
+- job: null
+ output: {
+ "stuff": {
+ "location": "bar.txt",
+ "basename": "bar.txt",
+ "class": "File",
+ "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
+ "size": 0
+ }
+ }
+ tool: 17521-dot-slash-glob.cwl
+ doc: "Test issue 17521 - bug with leading './' capturing files in subdirectories"
+
+- job: null
+ output: {
+ "stuff": {
+ "basename": "foo",
+ "class": "Directory",
+ "listing": [
+ {
+ "basename": "bar.txt",
+ "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
+ "class": "File",
+ "location": "foo/bar.txt",
+ "size": 0
+ }
+ ],
+ "location": "foo"
+ }
+ }
+ tool: 10380-trailing-slash-dir.cwl
+ doc: "Test issue 10380 - bug with trailing slash when capturing an output directory"
+
+- job: null
+ output: {
+ "stuff": {
+ "basename": "78f3957c41d044352303a3fa326dff1e+102",
+ "class": "Directory",
+ "listing": [
+ {
+ "basename": "baz.txt",
+ "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
+ "class": "File",
+ "location": "78f3957c41d044352303a3fa326dff1e+102/baz.txt",
+ "size": 0
+ },
+ {
+ "basename": "foo",
+ "class": "Directory",
+ "listing": [
+ {
+ "basename": "bar.txt",
+ "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
+ "class": "File",
+ "location": "78f3957c41d044352303a3fa326dff1e+102/foo/bar.txt",
+ "size": 0
+ }
+ ],
+ "location": "78f3957c41d044352303a3fa326dff1e+102/foo"
+ }
+ ],
+ "location": "78f3957c41d044352303a3fa326dff1e+102"
+ }
+ }
+ tool: 17801-runtime-outdir.cwl
+ doc: "Test issue 17801 - bug using $(runtime.outdir) to capture the output directory"
+
+- job: null
+ output:
+ "val": "keep:f225e6259bdd63bc7240599648dde9f1+97/hg19.fa"
+ tool: 17858-pack-visit-crash.cwl
+ doc: "Test issue 17858 - keep ref default inputs on ExpressionTool"
+
+- job: 17879-ignore-sbg-fields-job.yml
+ output:
+ "outstr": "foo woble bar"
+ tool: 17879-ignore-sbg-fields.cwl
+ doc: "Test issue 17879 - ignores sbg fields"
+
+- job: chipseq/chip-seq-single.json
+ output: {}
+ tool: chipseq/cwl-packed.json
+ doc: "Test issue 18723 - correctly upload two directories with the same basename"
+
+- job: null
+ output: {}
+ tool: 18994-basename/wf_ren.cwl
+ doc: "Test issue 18994 - correctly stage file with modified basename"
+
+- job: 19109-upload-secondary.yml
+ output: {
+ "out": {
+ "basename": "file1.catted",
+ "class": "File",
+ "location": "file1.catted",
+ "size": 20,
+ "checksum": "sha1$c4cead17cebdd829f38c48e18a28f1da72339ef7"
+ },
+ "out2": {
+ "basename": "file2.catted",
+ "checksum": "sha1$6f71c5d1512519ede45bedfdd624e05fd8037b0d",
+ "class": "File",
+ "location": "file2.catted",
+ "size": 12
+ }
+ }
+ tool: 19109-upload-secondary.cwl
+ doc: "Test issue 19109 - correctly discover & upload secondary files"
+
+- job: 19678-name-id.yml
+ output: {
+ "processed_name": {
+ "first": "foo",
+ "last": "bar"
+ }
+ }
+ tool: 19678-name-id.cwl
+ doc: "Test issue 19678 - non-string type input parameter called 'name'"
projects / arvados.git / blobdiff