X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/7e1044a644e388d172a645426bc3df69ab7d69c4..09cbdc3074b3f1e69c9c537875146f6da0a6ed8f:/sdk/cwl/tests/arvados-tests.yml

diff --git a/sdk/cwl/tests/arvados-tests.yml b/sdk/cwl/tests/arvados-tests.yml
index d649c3bf67..4ed4d4ac32 100644
--- a/sdk/cwl/tests/arvados-tests.yml
+++ b/sdk/cwl/tests/arvados-tests.yml
@@ -120,7 +120,12 @@
 
 - job: null
   output:
-    out: null
+    "out": {
+        "location": "hello.out",
+        "class": "File",
+        "checksum": "sha1$ec5d3976351abab45a483a49ce714a8430cb203a",
+        "size": 24
+    }
   tool: 13976-keepref-wf.cwl
   doc: "Test issue 13976"
 
@@ -179,6 +184,12 @@
   tool: wf/runin-reqs-wf4.cwl
   doc: "RunInSingleContainer discovers static resource request in subworkflow steps"
 
+- job: null
+  output:
+    out: null
+  tool: wf/runin-reqs-wf5.cwl
+  doc: "RunInSingleContainer has minimum 128 MiB RAM"
+
 - job: secondaryFiles/inp3.yml
   output: {}
   tool: secondaryFiles/example1.cwl
@@ -212,9 +223,16 @@
   output:
     out: null
   tool: wf-defaults/wf4.cwl
-  doc: default in embedded subworkflow missing 'id' field
+  doc: default in embedded subworkflow missing 'id' field, v1.0
   should_fail: true
 
+- job: null
+  output:
+    out: null
+  tool: wf-defaults/wf8.cwl
+  doc: default in embedded subworkflow missing 'id' field, v1.1
+  should_fail: false
+
 - job: null
   output:
     out: null
@@ -298,3 +316,166 @@
   }
   tool: 15241-writable-dir.cwl
   doc: Test for writable collections
+
+- job: badkeep.yml
+  output: {}
+  should_fail: true
+  tool: 15295-bad-keep-ref.cwl
+  doc: Test checking for invalid keepref
+
+- job: listing-job.yml
+  output: {
+    "out": {
+        "class": "File",
+        "location": "output.txt",
+        "size": 5,
+        "checksum": "sha1$724ba28f4a9a1b472057ff99511ed393a45552e1"
+    }
+  }
+  tool: 16169-no-listing-hint.cwl
+  doc: "Test cwltool:LoadListingRequirement propagation"
+
+- job: hello.yml
+  output:
+    "out": {
+        "location": "hello.out",
+        "class": "File",
+        "checksum": "sha1$ec5d3976351abab45a483a49ce714a8430cb203a",
+        "size": 24
+    }
+  tool: 16377-missing-default.cwl
+  doc: "Test issue 16377 - missing default fails even when it should be overridden by valid input"
+
+- job: hello.yml
+  output:
+    "out":
+      "checksum": "sha1$f1d2d2f924e986ac86fdf7b36c94bcdf32beec15"
+      "class": "File"
+      "location": "foo.txt"
+      "size": 4
+  tool: 17267-broken-schemas.cwl
+  doc: "Test issue 17267 - inaccessible $schemas URL is not a fatal error"
+
+- job: null
+  output: {}
+  tool: wf/trick_defaults2.cwl
+  doc: "Test issue 17462 - secondary file objects on file defaults are not resolved"
+
+- job: null
+  output: {
+    "stuff": {
+        "location": "bar.txt",
+        "basename": "bar.txt",
+        "class": "File",
+        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
+        "size": 0
+    }
+  }
+  tool: 17521-dot-slash-glob.cwl
+  doc: "Test issue 17521 - bug with leading './' capturing files in subdirectories"
+
+- job: null
+  output: {
+    "stuff": {
+        "basename": "foo",
+        "class": "Directory",
+        "listing": [
+            {
+                "basename": "bar.txt",
+                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
+                "class": "File",
+                "location": "foo/bar.txt",
+                "size": 0
+            }
+        ],
+        "location": "foo"
+    }
+  }
+  tool: 10380-trailing-slash-dir.cwl
+  doc: "Test issue 10380 - bug with trailing slash when capturing an output directory"
+
+- job: null
+  output: {
+    "stuff": {
+        "basename": "78f3957c41d044352303a3fa326dff1e+102",
+        "class": "Directory",
+        "listing": [
+            {
+                "basename": "baz.txt",
+                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
+                "class": "File",
+                "location": "78f3957c41d044352303a3fa326dff1e+102/baz.txt",
+                "size": 0
+            },
+            {
+                "basename": "foo",
+                "class": "Directory",
+                "listing": [
+                    {
+                        "basename": "bar.txt",
+                        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
+                        "class": "File",
+                        "location": "78f3957c41d044352303a3fa326dff1e+102/foo/bar.txt",
+                        "size": 0
+                    }
+                ],
+                "location": "78f3957c41d044352303a3fa326dff1e+102/foo"
+            }
+        ],
+        "location": "78f3957c41d044352303a3fa326dff1e+102"
+    }
+  }
+  tool: 17801-runtime-outdir.cwl
+  doc: "Test issue 17801 - bug using $(runtime.outdir) to capture the output directory"
+
+- job: null
+  output:
+    "val": "keep:f225e6259bdd63bc7240599648dde9f1+97/hg19.fa"
+  tool: 17858-pack-visit-crash.cwl
+  doc: "Test issue 17858 - keep ref default inputs on ExpressionTool"
+
+- job: 17879-ignore-sbg-fields-job.yml
+  output:
+    "outstr": "foo woble bar"
+  tool: 17879-ignore-sbg-fields.cwl
+  doc: "Test issue 17879 - ignores sbg fields"
+
+- job: chipseq/chip-seq-single.json
+  output: {}
+  tool: chipseq/cwl-packed.json
+  doc: "Test issue 18723 - correctly upload two directories with the same basename"
+
+- job: null
+  output: {}
+  tool: 18994-basename/wf_ren.cwl
+  doc: "Test issue 18994 - correctly stage file with modified basename"
+
+- job: 19109-upload-secondary.yml
+  output: {
+    "out": {
+        "basename": "file1.catted",
+        "class": "File",
+        "location": "file1.catted",
+        "size": 20,
+        "checksum": "sha1$c4cead17cebdd829f38c48e18a28f1da72339ef7"
+    },
+    "out2": {
+        "basename": "file2.catted",
+        "checksum": "sha1$6f71c5d1512519ede45bedfdd624e05fd8037b0d",
+        "class": "File",
+        "location": "file2.catted",
+        "size": 12
+    }
+  }
+  tool: 19109-upload-secondary.cwl
+  doc: "Test issue 19109 - correctly discover & upload secondary files"
+
+- job: 19678-name-id.yml
+  output: {
+    "processed_name": {
+        "first": "foo",
+        "last": "bar"
+    }
+  }
+  tool: 19678-name-id.cwl
+  doc: "Test issue 19678 - non-string type input parameter called 'name'"