+++ /dev/null
-FROM arvados/jobs
-MAINTAINER Peter Amstutz <peter.amstutz@curoverse.com>
-
-USER root
-
-RUN apt-get update -qq
-RUN apt-get install -qqy openjdk-7-jre-headless && \
- cd /tmp && \
- curl --location http://downloads.sourceforge.net/project/bio-bwa/bwa-0.7.9a.tar.bz2 -o bwa-0.7.9a.tar.bz2 && \
- tar xjf bwa-0.7.9a.tar.bz2 && \
- cd bwa-0.7.9a && \
- make && \
- (find . -executable -type f -print0 | xargs -0 -I {} mv {} /usr/local/bin) && \
- rm -r /tmp/bwa-0.7.9a* && \
- cd /tmp && \
- curl --location http://downloads.sourceforge.net/project/samtools/samtools/0.1.19/samtools-0.1.19.tar.bz2 -o samtools-0.1.19.tar.bz2 && \
- tar xjf samtools-0.1.19.tar.bz2 && \
- cd samtools-0.1.19 && \
- make && \
- (find . -executable -type f -print0 | xargs -0 -I {} mv {} /usr/local/bin) && \
- rm -r /tmp/samtools-0.1.19*
-
-USER crunch