X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/788ecdf8085f5e69cd3dc960f510b49f11432cb3..4a466cd2caf121678a1d46d049c5b1e5477b6d50:/docker/java-bwa-samtools/Dockerfile

diff --git a/docker/java-bwa-samtools/Dockerfile b/docker/java-bwa-samtools/Dockerfile
deleted file mode 100644
index 5dae9a628a..0000000000
--- a/docker/java-bwa-samtools/Dockerfile
+++ /dev/null
@@ -1,23 +0,0 @@
-FROM arvados/jobs
-MAINTAINER Peter Amstutz <peter.amstutz@curoverse.com>
-
-USER root
-
-RUN apt-get update -qq
-RUN apt-get install -qqy openjdk-7-jre-headless && \
-    cd /tmp && \
-    curl --location http://downloads.sourceforge.net/project/bio-bwa/bwa-0.7.9a.tar.bz2 -o bwa-0.7.9a.tar.bz2 && \
-    tar xjf bwa-0.7.9a.tar.bz2 && \
-    cd bwa-0.7.9a && \
-    make && \
-    (find . -executable -type f -print0 | xargs -0 -I {} mv {} /usr/local/bin) && \
-    rm -r /tmp/bwa-0.7.9a* && \
-    cd /tmp && \
-    curl --location http://downloads.sourceforge.net/project/samtools/samtools/0.1.19/samtools-0.1.19.tar.bz2 -o samtools-0.1.19.tar.bz2 && \
-    tar xjf samtools-0.1.19.tar.bz2 && \
-    cd samtools-0.1.19 && \
-    make && \
-    (find . -executable -type f -print0 | xargs -0 -I {} mv {} /usr/local/bin) && \
-    rm -r /tmp/samtools-0.1.19*
-
-USER crunch