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Added ForceRecord() method to enable writing remaining log changes before exiting.
[arvados.git] / crunch_scripts / GATK2-merge-call
diff --git a/crunch_scripts/GATK2-merge-call b/crunch_scripts/GATK2-merge-call
index be204404fb9e8ed239c1934895713fea311b4b9a..c58444909f7678bfa1fe4cf42d8719741039c7f6 100755 (executable)
--- a/crunch_scripts/GATK2-merge-call
+++ b/crunch_scripts/GATK2-merge-call
@@ -200,7 +200,7 @@ arvados_gatk2.run(
         '-o', os.path.join(tmpdir, 'out.vcf'),
         '--dbsnp', os.path.join(bundle_dir, 'dbsnp_137.b37.vcf'),
         '-metrics', 'UniGenMetrics',
-        '-A', 'Coverage',
+        '-A', 'DepthOfCoverage',
         '-A', 'AlleleBalance',
         '-A', 'QualByDepth',
         '-A', 'HaplotypeScore',