X-Git-Url: https://git.arvados.org/arvados.git/blobdiff_plain/6d21143f763a0a3a5098acb5698cb549f37a6db5..b14bc80d764b85a6ddfed32198b2144b5adf2637:/crunch_scripts/GATK2-merge-call diff --git a/crunch_scripts/GATK2-merge-call b/crunch_scripts/GATK2-merge-call index be204404fb..c58444909f 100755 --- a/crunch_scripts/GATK2-merge-call +++ b/crunch_scripts/GATK2-merge-call @@ -200,7 +200,7 @@ arvados_gatk2.run( '-o', os.path.join(tmpdir, 'out.vcf'), '--dbsnp', os.path.join(bundle_dir, 'dbsnp_137.b37.vcf'), '-metrics', 'UniGenMetrics', - '-A', 'Coverage', + '-A', 'DepthOfCoverage', '-A', 'AlleleBalance', '-A', 'QualByDepth', '-A', 'HaplotypeScore',