Merge branch '15397-remove-obsolete-apis'

[arvados.git] / doc / user / cwl / bwa-mem / bwa-mem.cwl

diff --git a/doc/user/cwl/bwa-mem/bwa-mem.cwl b/doc/user/cwl/bwa-mem/bwa-mem.cwl
index b5c9f82a1a5f79970a97e92d91fce7de9268430c..018867c83e29bdf04bb6d54173e86f059c192d0c 100755 (executable)
--- a/doc/user/cwl/bwa-mem/bwa-mem.cwl
+++ b/doc/user/cwl/bwa-mem/bwa-mem.cwl
@@ -8,13 +8,13 @@ class: CommandLineTool
 
 hints:
   DockerRequirement:
-    dockerPull: biodckr/bwa
+    dockerPull: quay.io/biocontainers/bwa:0.7.17--ha92aebf_3
 
 baseCommand: [bwa, mem]
 
 arguments:
   - {prefix: "-t", valueFrom: $(runtime.cores)}
-  - {prefix: "-R", valueFrom: "@RG\tID:$(inputs.group_id)\tPL:$(inputs.PL)\tSM:$(inputs.sample_id)"}
+  - {prefix: "-R", valueFrom: '@RG\\\tID:$(inputs.group_id)\\\tPL:$(inputs.PL)\\\tSM:$(inputs.sample_id)'}
 
 inputs:
   reference: