2 # Copyright (C) The Arvados Authors. All rights reserved.
4 # SPDX-License-Identifier: AGPL-3.0
7 . `dirname "$(readlink -f "$0")"`/run-library.sh
9 read -rd "\000" helpmessage <<EOF
10 $(basename $0): Install and test Arvados components.
12 Exit non-zero if any tests fail.
15 $(basename $0) WORKSPACE=/path/to/arvados [options]
19 --skip FOO Do not test the FOO component.
20 --skip sanity Skip initial dev environment sanity checks.
21 --skip install Do not run any install steps. Just run tests.
22 You should provide GOPATH, GEMHOME, and VENVDIR options
23 from a previous invocation if you use this option.
24 --only FOO Do not test anything except the FOO component.
25 --temp DIR Install components and dependencies under DIR instead of
26 making a new temporary directory. Implies --leave-temp.
27 --leave-temp Do not remove GOPATH, virtualenv, and other temp dirs at exit.
28 Instead, show the path to give as --temp to reuse them in
29 subsequent invocations.
30 --repeat N Repeat each install/test step until it succeeds N times.
31 --retry Prompt to retry if an install or test suite fails.
32 --only-install Run specific install step
33 --short Skip (or scale down) some slow tests.
34 --interactive Set up, then prompt for test/install steps to perform.
35 WORKSPACE=path Arvados source tree to test.
36 CONFIGSRC=path Dir with config.yml file containing PostgreSQL section for use by tests.
37 services/api_test="TEST=test/functional/arvados/v1/collections_controller_test.rb"
38 Restrict apiserver tests to the given file
39 sdk/python_test="--test-suite tests.test_keep_locator"
40 Restrict Python SDK tests to the given class
41 apps/workbench_test="TEST=test/integration/pipeline_instances_test.rb"
42 Restrict Workbench tests to the given file
43 services/githttpd_test="-check.vv"
44 Show all log messages, even when tests pass (also works
45 with services/keepstore_test etc.)
47 Print more debug messages
48 envvar=value Set \$envvar to value. Primarily useful for WORKSPACE,
49 *_test, and other examples shown above.
51 Assuming "--skip install" is not given, all components are installed
52 into \$GOPATH, \$VENDIR, and \$GEMHOME before running any tests. Many
53 test suites depend on other components being installed, and installing
54 everything tends to be quicker than debugging dependencies.
56 As a special concession to the current CI server config, CONFIGSRC
57 defaults to $HOME/arvados-api-server if that directory exists.
59 More information and background:
61 https://dev.arvados.org/projects/arvados/wiki/Running_tests
66 apps/workbench_units (*)
67 apps/workbench_functionals (*)
68 apps/workbench_integration (*)
69 apps/workbench_benchmark
70 apps/workbench_profile
78 lib/controller/federation
79 lib/controller/railsproxy
88 lib/dispatchcloud/container
89 lib/dispatchcloud/scheduler
90 lib/dispatchcloud/sshexecutor
91 lib/dispatchcloud/worker
97 services/dockercleaner
104 services/keep-balance
106 services/crunch-dispatch-local
107 services/crunch-dispatch-slurm
129 tools/crunchstat-summary
130 tools/crunchstat-summary:py3
133 tools/keep-block-check
135 (*) apps/workbench is shorthand for apps/workbench_units +
136 apps/workbench_functionals + apps/workbench_integration
140 # First make sure to remove any ARVADOS_ variables from the calling
141 # environment that could interfere with the tests.
142 unset $(env | cut -d= -f1 | grep \^ARVADOS_)
144 # Reset other variables that could affect our [tests'] behavior by
153 export LANG=en_US.UTF-8
163 if [[ -z "$temp" ]]; then
164 # we did not even get as far as making a temp dir
166 elif [[ -z "$temp_preserve" ]]; then
167 # Go creates readonly dirs in the module cache, which cause
168 # "rm -rf" to fail unless we chmod first.
172 echo "Leaving behind temp dirs in $temp"
178 echo >&2 "Fatal: $* (encountered in ${FUNCNAME[1]} at ${BASH_SOURCE[1]} line ${BASH_LINENO[0]})"
184 if which create-plot-data-from-log.sh >/dev/null; then
185 create-plot-data-from-log.sh $BUILD_NUMBER "$WORKSPACE/apps/workbench/log/test.log" "$WORKSPACE/apps/workbench/log/"
187 rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
189 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
196 [[ -n "${skip[sanity]}" ]] && return 0
197 ( [[ -n "$WORKSPACE" ]] && [[ -d "$WORKSPACE/services" ]] ) \
198 || fatal "WORKSPACE environment variable not set to a source directory (see: $0 --help)"
199 [[ -z "$CONFIGSRC" ]] || [[ -s "$CONFIGSRC/config.yml" ]] \
200 || fatal "CONFIGSRC is $CONFIGSRC but '$CONFIGSRC/config.yml' is empty or not found (see: $0 --help)"
201 echo Checking dependencies:
202 echo "locale: ${LANG}"
203 [[ "$(locale charmap)" = "UTF-8" ]] \
204 || fatal "Locale '${LANG}' is broken/missing. Try: echo ${LANG} | sudo tee -a /etc/locale.gen && sudo locale-gen"
207 || fatal "No ruby. Install >=2.1.9 (using rbenv, rvm, or source)"
210 || fatal "No go binary. See http://golang.org/doc/install"
211 [[ $(go version) =~ go1.([0-9]+) ]] && [[ ${BASH_REMATCH[1]} -ge 12 ]] \
212 || fatal "Go >= 1.12 required. See http://golang.org/doc/install"
214 gcc --version | egrep ^gcc \
215 || fatal "No gcc. Try: apt-get install build-essential"
217 find /usr/include -path '*fuse/fuse.h' | egrep --max-count=1 . \
218 || fatal "No fuse/fuse.h. Try: apt-get install libfuse-dev"
220 find /usr/include -path '*gnutls/gnutls.h' | egrep --max-count=1 . \
221 || fatal "No gnutls/gnutls.h. Try: apt-get install libgnutls28-dev"
222 echo -n 'virtualenv: '
223 python3 -m venv -h | egrep --max-count=1 . \
224 || fatal "No virtualenv. Try: apt-get install python3-venv"
225 echo -n 'Python3 pyconfig.h: '
226 find /usr/include -path '*/python3*/pyconfig.h' | egrep --max-count=1 . \
227 || fatal "No Python3 pyconfig.h. Try: apt-get install python3-dev"
229 || fatal "No netstat. Try: apt-get install net-tools"
231 PATH="$PATH:/sbin:/usr/sbin:/usr/local/sbin" nginx -v \
232 || fatal "No nginx. Try: apt-get install nginx"
235 || fatal "No gitolite. Try: apt-get install gitolite3"
238 || fatal "No npm. Try: wget -O- https://nodejs.org/dist/v10.23.1/node-v10.23.1-linux-x64.tar.xz | sudo tar -C /usr/local -xJf - && sudo ln -s ../node-v10.23.1-linux-x64/bin/{node,npm} /usr/local/bin/"
240 cadaver --version | grep -w cadaver \
241 || fatal "No cadaver. Try: apt-get install cadaver"
242 echo -n 'libattr1 xattr.h: '
243 find /usr/include -path '*/attr/xattr.h' | egrep --max-count=1 . \
244 || fatal "No libattr1 xattr.h. Try: apt-get install libattr1-dev"
245 echo -n 'libcurl curl.h: '
246 find /usr/include -path '*/curl/curl.h' | egrep --max-count=1 . \
247 || fatal "No libcurl curl.h. Try: apt-get install libcurl4-gnutls-dev"
248 echo -n 'libpq libpq-fe.h: '
249 find /usr/include -path '*/postgresql/libpq-fe.h' | egrep --max-count=1 . \
250 || fatal "No libpq libpq-fe.h. Try: apt-get install libpq-dev"
251 echo -n 'libpam pam_appl.h: '
252 find /usr/include -path '*/security/pam_appl.h' | egrep --max-count=1 . \
253 || fatal "No libpam pam_appl.h. Try: apt-get install libpam0g-dev"
254 echo -n 'postgresql: '
255 psql --version || fatal "No postgresql. Try: apt-get install postgresql postgresql-client-common"
256 echo -n 'phantomjs: '
257 phantomjs --version || fatal "No phantomjs. Try: apt-get install phantomjs"
259 which Xvfb || fatal "No xvfb. Try: apt-get install xvfb"
261 dot -V || fatal "No graphviz. Try: apt-get install graphviz"
262 echo -n 'geckodriver: '
263 geckodriver --version | grep ^geckodriver || echo "No geckodriver. Try: arvados-server install"
264 echo -n 'singularity: '
265 singularity --version || fatal "No singularity. Try: arvados-server install"
266 echo -n 'docker client: '
267 docker --version || echo "No docker client. Try: arvados-server install"
268 echo -n 'docker server: '
269 docker info --format='{{.ServerVersion}}' || echo "No docker server. Try: arvados-server install"
271 if [[ "$NEED_SDK_R" = true ]]; then
274 which Rscript || fatal "No Rscript. Try: apt-get install r-base"
276 Rscript -e "library('testthat')" || fatal "No testthat. Try: apt-get install r-cran-testthat"
277 # needed for roxygen2, needed for devtools, needed for R sdk
278 pkg-config --exists libxml-2.0 || fatal "No libxml2. Try: apt-get install libxml2-dev"
279 # needed for pkgdown, builds R SDK doc pages
280 which pandoc || fatal "No pandoc. Try: apt-get install pandoc"
282 echo 'procs with /dev/fuse open:'
283 find /proc/*/fd -lname /dev/fuse 2>/dev/null | cut -d/ -f3 | xargs --no-run-if-empty ps -lywww
284 echo 'grep fuse /proc/self/mountinfo:'
285 grep fuse /proc/self/mountinfo
289 # i.e. rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
290 # $BUILD_NUMBER is set by Jenkins if this script is being called as part of a Jenkins run
291 if [[ -f "$1/$2" ]]; then
292 THEDATE=`date +%Y%m%d%H%M%S`
293 mv "$1/$2" "$1/$THEDATE-$BUILD_NUMBER-$2"
294 gzip "$1/$THEDATE-$BUILD_NUMBER-$2"
302 skip[apps/workbench_profile]=1
309 echo >&2 "$helpmessage"
317 only[$1]=1; skip[$1]=""; shift
329 only_install="$1"; shift
339 repeat=$((${1}+0)); shift
345 suite="${arg%%_test=*}"
347 testargs["$suite"]="$args"
350 eval export $(echo $arg | cut -d= -f1)=\"$(echo $arg | cut -d= -f2-)\"
353 echo >&2 "$0: Unrecognized option: '$arg'. Try: $0 --help"
359 # R SDK installation is very slow (~360s in a clean environment) and only
360 # required when testing it. Skip that step if it is not needed.
363 if [[ ${#only[@]} -ne 0 ]] &&
364 [[ -z "${only['sdk/R']}" && -z "${only['doc']}" ]]; then
368 if [[ ${skip["sdk/R"]} == 1 && ${skip["doc"]} == 1 ]]; then
372 if [[ $NEED_SDK_R == false ]]; then
373 echo "R SDK not needed, it will not be installed."
378 pid="$(cat "$WORKSPACE/tmp/${svc}.pid")"
379 if [[ -z "$pid" ]] || ! kill -0 "$pid"; then
380 tail $WORKSPACE/tmp/${1}*.log
381 echo "${svc} pid ${pid} not running"
384 echo "${svc} pid ${pid} ok"
389 base=$("${VENV3DIR}/bin/python3" -c "import yaml; print(list(yaml.safe_load(open('$ARVADOS_CONFIG','r'))['Clusters']['zzzzz']['Services']['$1']['InternalURLs'].keys())[0])")
390 url="$base/_health/ping"
391 if ! curl -Ss -H "Authorization: Bearer e687950a23c3a9bceec28c6223a06c79" "${url}" | tee -a /dev/stderr | grep '"OK"'; then
397 checkdiscoverydoc() {
398 dd="https://${1}/discovery/v1/apis/arvados/v1/rest"
399 if ! (set -o pipefail; curl -fsk "$dd" | grep -q ^{ ); then
400 echo >&2 "ERROR: could not retrieve discovery doc from RailsAPI at $dd"
401 tail -v $WORKSPACE/tmp/railsapi.log
408 if [[ -n "$ARVADOS_TEST_API_HOST" ]]; then
411 . "$VENV3DIR/bin/activate"
412 echo 'Starting API, controller, keepproxy, keep-web, githttpd, ws, and nginx ssl proxy...'
413 if [[ ! -d "$WORKSPACE/services/api/log" ]]; then
414 mkdir -p "$WORKSPACE/services/api/log"
416 # Remove empty api.pid file if it exists
417 if [[ -f "$WORKSPACE/tmp/api.pid" && ! -s "$WORKSPACE/tmp/api.pid" ]]; then
418 rm -f "$WORKSPACE/tmp/api.pid"
420 all_services_stopped=
424 && eval $(python3 sdk/python/tests/run_test_server.py start --auth admin) \
425 && export ARVADOS_TEST_API_HOST="$ARVADOS_API_HOST" \
426 && export ARVADOS_TEST_API_INSTALLED="$$" \
427 && checkpidfile api \
428 && checkdiscoverydoc $ARVADOS_API_HOST \
429 && eval $(python3 sdk/python/tests/run_test_server.py start_nginx) \
430 && checkpidfile nginx \
431 && python3 sdk/python/tests/run_test_server.py start_controller \
432 && checkpidfile controller \
433 && checkhealth Controller \
434 && checkdiscoverydoc $ARVADOS_API_HOST \
435 && python3 sdk/python/tests/run_test_server.py start_keep_proxy \
436 && checkpidfile keepproxy \
437 && python3 sdk/python/tests/run_test_server.py start_keep-web \
438 && checkpidfile keep-web \
439 && checkhealth WebDAV \
440 && python3 sdk/python/tests/run_test_server.py start_githttpd \
441 && checkpidfile githttpd \
442 && checkhealth GitHTTP \
443 && python3 sdk/python/tests/run_test_server.py start_ws \
445 && export ARVADOS_TEST_PROXY_SERVICES=1 \
446 && (env | egrep ^ARVADOS) \
449 if [[ $fail != 0 ]]; then
450 unset ARVADOS_TEST_API_HOST
456 if [[ -n "$all_services_stopped" ]]; then
459 unset ARVADOS_TEST_API_HOST ARVADOS_TEST_PROXY_SERVICES
460 . "$VENV3DIR/bin/activate" || return
462 && python3 sdk/python/tests/run_test_server.py stop_nginx \
463 && python3 sdk/python/tests/run_test_server.py stop_githttpd \
464 && python3 sdk/python/tests/run_test_server.py stop_ws \
465 && python3 sdk/python/tests/run_test_server.py stop_keep-web \
466 && python3 sdk/python/tests/run_test_server.py stop_keep_proxy \
467 && python3 sdk/python/tests/run_test_server.py stop_controller \
468 && python3 sdk/python/tests/run_test_server.py stop \
469 && all_services_stopped=1
475 if [[ -n "$ignore_sigint" ]]; then
476 echo >&2 "ignored SIGINT"
479 failures+=("($(basename $0) interrupted)")
484 setup_ruby_environment() {
485 if [[ -s "$HOME/.rvm/scripts/rvm" ]] ; then
486 source "$HOME/.rvm/scripts/rvm"
488 elif [[ -s "/usr/local/rvm/scripts/rvm" ]] ; then
489 source "/usr/local/rvm/scripts/rvm"
495 if [[ "$using_rvm" == true ]]; then
496 # If rvm is in use, we can't just put separate "dependencies"
497 # and "gems-under-test" paths to GEM_PATH: passenger resets
498 # the environment to the "current gemset", which would lose
499 # our GEM_PATH and prevent our test suites from running ruby
500 # programs (for example, the Workbench test suite could not
501 # boot an API server or run arv). Instead, we have to make an
502 # rvm gemset and use it for everything.
504 [[ `type rvm | head -n1` == "rvm is a function" ]] \
507 # Put rvm's favorite path back in first place (overriding
508 # virtualenv, which just put itself there). Ignore rvm's
509 # complaint about not being in first place already.
510 rvm use @default 2>/dev/null
512 # Create (if needed) and switch to an @arvados-tests-* gemset,
513 # salting the gemset name so it doesn't interfere with
514 # concurrent builds in other workspaces. Leave the choice of
515 # ruby to the caller.
516 gemset="arvados-tests-$(echo -n "${WORKSPACE}" | md5sum | head -c16)"
517 rvm use "@${gemset}" --create \
518 || fatal 'rvm gemset setup'
521 (bundle version | grep -q 2.2.19) || gem install --no-document bundler -v 2.2.19
522 bundle="$(which bundle)"
524 "$bundle" version | grep 2.2.19 || fatal 'install bundler'
526 # When our "bundle install"s need to install new gems to
527 # satisfy dependencies, we want them to go where "gem install
528 # --user-install" would put them. (However, if the caller has
529 # already set GEM_HOME, we assume that's where dependencies
530 # should be installed, and we should leave it alone.)
532 if [ -z "$GEM_HOME" ]; then
533 user_gempath="$(gem env gempath)"
534 export GEM_HOME="${user_gempath%%:*}"
536 PATH="$(gem env gemdir)/bin:$PATH"
538 # When we build and install our own gems, we install them in our
539 # $GEMHOME tmpdir, and we want them to be at the front of GEM_PATH and
540 # PATH so integration tests prefer them over other versions that
541 # happen to be installed in $user_gempath, system dirs, etc.
543 tmpdir_gem_home="$(env - PATH="$PATH" HOME="$GEMHOME" gem env gempath | cut -f1 -d:)"
544 PATH="$tmpdir_gem_home/bin:$PATH"
545 export GEM_PATH="$tmpdir_gem_home:$(gem env gempath)"
547 echo "Will install dependencies to $(gem env gemdir)"
548 echo "Will install bundler and arvados gems to $tmpdir_gem_home"
549 echo "Gem search path is GEM_PATH=$GEM_PATH"
554 for v in ${versions[@]}; do
555 if ! gem list --installed --version "${v}" bundler >/dev/null; then
556 gem install --no-document --user $(for v in ${versions[@]}; do echo bundler:${v}; done)
560 "$bundle" version | tee /dev/stderr | grep -q 'version 2'
561 ) || fatal 'install bundler'
562 if test -d /var/lib/arvados-arvbox/ ; then
563 # Inside arvbox, use bundler-installed binstubs. The
564 # system bundler and rail's own bin/bundle refuse to work.
566 bundle=binstubs/bundle
572 if [[ "$using_rvm" == true ]]; then
575 GEM_HOME="$tmpdir_gem_home" GEM_PATH="$tmpdir_gem_home" "$@"
579 gem_uninstall_if_exists() {
580 if gem list "$1\$" | egrep '^\w'; then
581 gem uninstall --force --all --executables "$1"
586 local venvdest="$1"; shift
587 if ! [[ -e "$venvdest/bin/activate" ]] || ! [[ -e "$venvdest/bin/pip3" ]]; then
588 python3 -m venv "$@" "$venvdest" || fatal "virtualenv $venvdest failed"
589 elif [[ -n "$short" ]]; then
592 "$venvdest/bin/pip3" install --no-cache-dir 'setuptools>=18.5' 'pip>=7'
596 # If dependencies like ruby, go, etc. are installed in
597 # /var/lib/arvados -- presumably by "arvados-server install" --
598 # then we want to use those versions, instead of whatever happens
599 # to be installed in /usr.
600 PATH="/var/lib/arvados/bin:${PATH}"
603 echo "WORKSPACE=$WORKSPACE"
605 # Clean up .pyc files that may exist in the workspace
607 find -name '*.pyc' -delete
609 if [[ -z "$temp" ]]; then
613 # Set up temporary install dirs (unless existing dirs were supplied)
614 for tmpdir in VENV3DIR GOPATH GEMHOME R_LIBS
616 if [[ -z "${!tmpdir}" ]]; then
617 eval "$tmpdir"="$temp/$tmpdir"
619 if ! [[ -d "${!tmpdir}" ]]; then
620 mkdir "${!tmpdir}" || fatal "can't create ${!tmpdir} (does $temp exist?)"
624 rm -vf "${WORKSPACE}/tmp/*.log"
629 # Make sure our compiled binaries under test override anything
630 # else that might be in the environment.
631 export PATH=$GOPATH/bin:$PATH
633 # Jenkins config requires that glob tmp/*.log match something. Ensure
634 # that happens even if we don't end up running services that set up
636 mkdir -p "${WORKSPACE}/tmp/" || fatal "could not mkdir ${WORKSPACE}/tmp"
637 touch "${WORKSPACE}/tmp/controller.log" || fatal "could not touch ${WORKSPACE}/tmp/controller.log"
639 unset http_proxy https_proxy no_proxy
641 # Note: this must be the last time we change PATH, otherwise rvm will
643 setup_ruby_environment
649 go mod download || fatal "Go deps failed"
650 which goimports >/dev/null || go install golang.org/x/tools/cmd/goimports@latest || fatal "Go setup failed"
652 setup_virtualenv "$VENV3DIR"
653 . "$VENV3DIR/bin/activate"
655 # Needed for run_test_server.py which is used by certain (non-Python) tests.
656 # pdoc needed to generate the Python SDK documentation.
659 "${VENV3DIR}/bin/pip3" install wheel
660 "${VENV3DIR}/bin/pip3" install PyYAML
661 "${VENV3DIR}/bin/pip3" install httplib2
662 "${VENV3DIR}/bin/pip3" install future
663 "${VENV3DIR}/bin/pip3" install google-api-python-client
664 "${VENV3DIR}/bin/pip3" install ciso8601
665 "${VENV3DIR}/bin/pip3" install pycurl
666 "${VENV3DIR}/bin/pip3" install ws4py
667 "${VENV3DIR}/bin/pip3" install pdoc
668 cd "$WORKSPACE/sdk/python"
669 python3 setup.py install
670 ) || fatal "installing PyYAML and sdk/python failed"
678 if [[ "$remain" -gt 1 ]]; then
679 remain=$((${remain}-1))
680 title "(repeating ${remain} more times)"
684 elif [[ "$retry" == 1 ]]; then
685 read -p 'Try again? [Y/n] ' x
686 if [[ "$x" != "y" ]] && [[ "$x" != "" ]]
698 apps/workbench_units | apps/workbench_functionals | apps/workbench_integration)
705 if [[ -n "${skip[$suite]}" || \
706 -n "${skip[$1]}" || \
707 (${#only[@]} -ne 0 && ${only[$suite]} -eq 0 && ${only[$1]} -eq 0) ]]; then
713 check_arvados_config "$1"
715 gofmt | doc | lib/cli | lib/cloud/azure | lib/cloud/ec2 | lib/cloud/cloudtest | lib/cmd | lib/dispatchcloud/sshexecutor | lib/dispatchcloud/worker)
716 check_arvados_config "$1"
717 # don't care whether services are running
720 check_arvados_config "$1"
721 if ! start_services; then
722 checkexit 1 "$1 tests"
723 title "test $1 -- failed to start services"
728 retry do_test_once ${@}
732 version=${ARVADOS_VERSION:-$(git log -n1 --format=%H)-dev}
733 echo "-X git.arvados.org/arvados.git/lib/cmd.version=${version} -X main.version=${version} -s -w"
743 if which deactivate >/dev/null; then deactivate; fi
744 if ! . "$VENV3DIR/bin/activate"
747 elif [[ "$2" == "go" ]]
749 covername="coverage-$(echo "$1" | sed -e 's/\//_/g')"
750 coverflags=("-covermode=count" "-coverprofile=$WORKSPACE/tmp/.$covername.tmp")
752 if [[ "$1" == "cmd/arvados-package" ]]; then
753 testflags+=("-timeout" "20m")
755 # We do "go install" here to catch compilation errors
756 # before trying "go test". Otherwise, coverage-reporting
757 # mode makes Go show the wrong line numbers when reporting
758 # compilation errors.
759 go install -ldflags "$(go_ldflags)" "$WORKSPACE/$1" && \
760 cd "$WORKSPACE/$1" && \
761 if [[ -n "${testargs[$1]}" ]]
763 # "go test -check.vv giturl" doesn't work, but this
765 go test ${short:+-short} ${testflags[@]} ${testargs[$1]}
767 # The above form gets verbose even when testargs is
768 # empty, so use this form in such cases:
769 go test ${short:+-short} ${testflags[@]} ${coverflags[@]} "git.arvados.org/arvados.git/$1"
772 if [[ -f "$WORKSPACE/tmp/.$covername.tmp" ]]
774 go tool cover -html="$WORKSPACE/tmp/.$covername.tmp" -o "$WORKSPACE/tmp/$covername.html"
775 rm "$WORKSPACE/tmp/.$covername.tmp"
777 [[ $result = 0 ]] && gofmt -e -d *.go
778 elif [[ "$2" == "pip" ]]
781 cd "$WORKSPACE/$1" && while :
783 tries=$((${tries}+1))
784 # $3 can name a path directory for us to use, including trailing
785 # slash; e.g., the bin/ subdirectory of a virtualenv.
786 if [[ -e "${3}activate" ]]; then
789 python setup.py ${short:+--short-tests-only} test ${testargs[$1]}
791 if [[ ${tries} < 3 && ${result} == 137 ]]
793 printf '\n*****\n%s tests killed -- retrying\n*****\n\n' "$1"
799 elif [[ "$2" != "" ]]
806 checkexit $result "$1 tests"
807 title "test $1 -- `timer`"
811 check_arvados_config() {
812 if [[ "$1" = "env" ]] ; then
815 if [[ -z "$ARVADOS_CONFIG" ]] ; then
816 # Create config file. The run_test_server script requires PyYAML,
817 # so virtualenv needs to be active. Downstream steps like
818 # workbench install which require a valid config.yml.
819 if [[ ! -s "$VENV3DIR/bin/activate" ]] ; then
822 . "$VENV3DIR/bin/activate"
824 eval $(python3 sdk/python/tests/run_test_server.py setup_config)
830 if [[ -n "${skip[install]}" || ( -n "${only_install}" && "${only_install}" != "${1}" && "${only_install}" != "${2}" ) ]]; then
833 check_arvados_config "$1"
834 retry do_install_once ${@}
842 if which deactivate >/dev/null; then deactivate; fi
843 if [[ "$1" != "env" ]] && ! . "$VENV3DIR/bin/activate"; then
845 elif [[ "$2" == "go" ]]
847 go install -ldflags "$(go_ldflags)" "$WORKSPACE/$1"
848 elif [[ "$2" == "pip" ]]
850 # $3 can name a path directory for us to use, including trailing
851 # slash; e.g., the bin/ subdirectory of a virtualenv.
853 # Need to change to a different directory after creating
854 # the source dist package to avoid a pip bug.
855 # see https://arvados.org/issues/5766 for details.
857 # Also need to install twice, because if it believes the package is
858 # already installed, pip it won't install it. So the first "pip
859 # install" ensures that the dependencies are met, the second "pip
860 # install" ensures that we've actually installed the local package
863 && "${3}python3" setup.py sdist rotate --keep=1 --match .tar.gz \
865 && "${3}pip3" install --no-cache-dir "$WORKSPACE/$1/dist"/*.tar.gz \
866 && "${3}pip3" install --no-cache-dir --no-deps --ignore-installed "$WORKSPACE/$1/dist"/*.tar.gz
867 elif [[ "$2" != "" ]]
874 checkexit $result "$1 install"
875 title "install $1 -- `timer`"
879 bundle_install_trylocal() {
882 echo "(Running bundle install --local. 'could not find package' messages are OK.)"
883 if ! "$bundle" install --local --no-deployment; then
884 echo "(Running bundle install again, without --local.)"
885 "$bundle" install --no-deployment
892 cd "$WORKSPACE/doc" \
893 && bundle_install_trylocal \
900 with_test_gemset gem_uninstall_if_exists "$gemname" \
901 && cd "$WORKSPACE/$srcpath" \
902 && bundle_install_trylocal \
903 && gem build "$gemname.gemspec" \
904 && with_test_gemset gem install --no-document $(ls -t "$gemname"-*.gem|head -n1)
908 install_gem arvados sdk/ruby
912 if [[ "$NEED_SDK_R" = true ]]; then
913 cd "$WORKSPACE/sdk/R" \
914 && Rscript --vanilla install_deps.R
919 install_gem arvados-cli sdk/cli
922 install_services/login-sync() {
923 install_gem arvados sdk/ruby
924 install_gem arvados-login-sync services/login-sync
927 install_services/api() {
929 check_arvados_config "services/api"
930 cd "$WORKSPACE/services/api" \
931 && RAILS_ENV=test bundle_install_trylocal \
934 rm -f config/environments/test.rb
935 cp config/environments/test.rb.example config/environments/test.rb
937 # Clear out any lingering postgresql connections to the test
938 # database, so that we can drop it. This assumes the current user
939 # is a postgresql superuser.
940 cd "$WORKSPACE/services/api" \
941 && test_database=$("${VENV3DIR}/bin/python3" -c "import yaml; print(yaml.safe_load(open('$ARVADOS_CONFIG','r'))['Clusters']['zzzzz']['PostgreSQL']['Connection']['dbname'])") \
942 && psql "$test_database" -c "SELECT pg_terminate_backend (pg_stat_activity.pid::int) FROM pg_stat_activity WHERE pg_stat_activity.datname = '$test_database';" 2>/dev/null
944 mkdir -p "$WORKSPACE/services/api/tmp/pids"
946 cert="$WORKSPACE/services/api/tmp/self-signed"
947 if [[ ! -e "$cert.pem" || "$(date -r "$cert.pem" +%s)" -lt 1512659226 ]]; then
949 dir="$WORKSPACE/services/api/tmp"
951 openssl req -newkey rsa:2048 -nodes -subj '/C=US/ST=State/L=City/CN=localhost' -out "$cert.csr" -keyout "$cert.key" </dev/null
952 openssl x509 -req -in "$cert.csr" -signkey "$cert.key" -out "$cert.pem" -days 3650 -extfile <(printf 'subjectAltName=DNS:localhost,DNS:::1,DNS:0.0.0.0,DNS:127.0.0.1,IP:::1,IP:0.0.0.0,IP:127.0.0.1')
956 cd "$WORKSPACE/services/api" \
958 && mkdir -p tmp/git \
960 && tar xf ../../test/test.git.tar \
961 && mkdir -p internal.git \
962 && git --git-dir internal.git init \
967 cd "$WORKSPACE/services/api"
968 export RAILS_ENV=test
969 if bin/rails db:environment:set ; then
973 bin/rake db:fixtures:load
977 declare -a pythonstuff
981 services/dockercleaner:py3
983 tools/crunchstat-summary:py3
987 gostuff=($(cd "$WORKSPACE" && git ls-files | grep '\.go$' | sed -e 's/\/[^\/]*$//' | sort -u))
989 install_apps/workbench() {
990 cd "$WORKSPACE/apps/workbench" \
991 && mkdir -p tmp/cache \
992 && RAILS_ENV=test bundle_install_trylocal \
993 && RAILS_ENV=test RAILS_GROUPS=assets "$bundle" exec rake npm:install
1000 ARVADOS_API_HOST=pirca.arvadosapi.com
1001 # Make sure python-epydoc is installed or the next line won't
1003 PYTHONPATH=$WORKSPACE/sdk/python/ "$bundle" exec rake linkchecker baseurl=file://$WORKSPACE/doc/.site/ arvados_workbench_host=https://workbench.$ARVADOS_API_HOST arvados_api_host=$ARVADOS_API_HOST
1008 cd "$WORKSPACE" || return 1
1009 dirs=$(ls -d */ | egrep -v 'vendor|tmp')
1010 [[ -z "$(gofmt -e -d $dirs | tee -a /dev/stderr)" ]]
1013 test_services/api() {
1014 rm -f "$WORKSPACE/services/api/git-commit.version"
1015 cd "$WORKSPACE/services/api" \
1016 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake test TESTOPTS=\'-v -d\' ${testargs[services/api]}
1020 cd "$WORKSPACE/sdk/ruby" \
1021 && "$bundle" exec rake test TESTOPTS=-v ${testargs[sdk/ruby]}
1025 if [[ "$NEED_SDK_R" = true ]]; then
1026 cd "$WORKSPACE/sdk/R" \
1027 && Rscript --vanilla run_test.R
1032 cd "$WORKSPACE/sdk/cli" \
1033 && mkdir -p /tmp/keep \
1034 && KEEP_LOCAL_STORE=/tmp/keep "$bundle" exec rake test TESTOPTS=-v ${testargs[sdk/cli]}
1037 test_sdk/java-v2() {
1038 cd "$WORKSPACE/sdk/java-v2" && gradle test ${testargs[sdk/java-v2]}
1041 test_services/login-sync() {
1042 cd "$WORKSPACE/services/login-sync" \
1043 && "$bundle" exec rake test TESTOPTS=-v ${testargs[services/login-sync]}
1046 test_apps/workbench_units() {
1047 local TASK="test:units"
1048 cd "$WORKSPACE/apps/workbench" \
1049 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_units]}
1052 test_apps/workbench_functionals() {
1053 local TASK="test:functionals"
1054 cd "$WORKSPACE/apps/workbench" \
1055 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_functionals]}
1058 test_apps/workbench_integration() {
1059 local TASK="test:integration"
1060 cd "$WORKSPACE/apps/workbench" \
1061 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_integration]}
1064 test_apps/workbench_benchmark() {
1065 local TASK="test:benchmark"
1066 cd "$WORKSPACE/apps/workbench" \
1067 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} ${testargs[apps/workbench_benchmark]}
1070 test_apps/workbench_profile() {
1071 local TASK="test:profile"
1072 cd "$WORKSPACE/apps/workbench" \
1073 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} ${testargs[apps/workbench_profile]}
1077 # Install parts needed by test suites
1079 do_install cmd/arvados-server go
1081 do_install sdk/python pip "${VENV3DIR}/bin/"
1083 do_install services/api
1084 do_install services/keepproxy go
1085 do_install services/keep-web go
1094 do_install services/login-sync
1095 for p in "${pythonstuff[@]}"
1098 if [[ -z ${skip[python3]} ]]; then
1099 do_install ${dir} pip "$VENV3DIR/bin/"
1102 for g in "${gostuff[@]}"
1106 do_install services/api
1107 do_install apps/workbench
1112 do_test services/api
1114 # Shortcut for when we're only running apiserver tests. This saves a bit of time,
1115 # because we don't need to start up the api server for subsequent tests.
1116 if [ ! -z "$only" ] && [ "$only" == "services/api" ]; then
1117 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
1126 do_test services/login-sync
1128 for p in "${pythonstuff[@]}"
1131 if [[ -z ${skip[python3]} ]]; then
1132 do_test ${dir} pip "$VENV3DIR/bin/"
1136 for g in "${gostuff[@]}"
1140 do_test apps/workbench_units
1141 do_test apps/workbench_functionals
1142 do_test apps/workbench_integration
1143 do_test apps/workbench_benchmark
1144 do_test apps/workbench_profile
1149 for g in "${gostuff[@]}"
1155 help_interactive() {
1156 echo "== Interactive commands:"
1157 echo "TARGET (short for 'test DIR')"
1159 echo "10 test TARGET (run test 10 times)"
1160 echo "test TARGET:py3 (test with python3)"
1161 echo "test TARGET -check.vv (pass arguments to test)"
1162 echo "install TARGET"
1163 echo "install env (go/python libs)"
1164 echo "install deps (go/python libs + arvados components needed for integration tests)"
1165 echo "reset (...services used by integration tests)"
1167 echo "== Test targets:"
1168 echo "${!testfuncargs[@]}" | tr ' ' '\n' | sort | column
1173 declare -A testfuncargs=()
1174 for g in "${gostuff[@]}"; do
1175 testfuncargs[$g]="$g go"
1177 for p in "${pythonstuff[@]}"; do
1179 testfuncargs[$dir:py3]="$dir pip $VENV3DIR/bin/"
1182 testfuncargs["sdk/cli"]="sdk/cli"
1183 testfuncargs["sdk/R"]="sdk/R"
1184 testfuncargs["sdk/java-v2"]="sdk/java-v2"
1185 testfuncargs["apps/workbench_units"]="apps/workbench_units"
1186 testfuncargs["apps/workbench_functionals"]="apps/workbench_functionals"
1187 testfuncargs["apps/workbench_integration"]="apps/workbench_integration"
1188 testfuncargs["apps/workbench_benchmark"]="apps/workbench_benchmark"
1189 testfuncargs["apps/workbench_profile"]="apps/workbench_profile"
1191 if [[ -z ${interactive} ]]; then
1198 if [[ -e "$VENV3DIR/bin/activate" ]]; then stop_services; fi
1200 if [[ "$TERM" = dumb ]]; then
1201 # assume emacs, or something, is offering a history buffer
1202 # and pre-populating the command will only cause trouble
1204 elif [[ ! -e "$VENV3DIR/bin/activate" ]]; then
1205 nextcmd="install deps"
1212 nextcmd="install deps"
1214 HISTFILE="$WORKSPACE/tmp/.history"
1217 while read -p 'What next? ' -e -i "$nextcmd" nextcmd; do
1218 history -s "$nextcmd"
1221 if [[ "${nextcmd}" =~ ^[0-9] ]]; then
1222 read count nextcmd <<<"${nextcmd}"
1224 read verb target opts <<<"${nextcmd}"
1225 target="${target%/}"
1226 target="${target/\/:/:}"
1243 argstarget=${target%:py3}
1244 testargs["$argstarget"]="${opts}"
1245 tt="${testfuncargs[${target}]}"
1247 while [ $count -gt 0 ]; do
1258 if [[ ${#successes[@]} -gt 0 || ${#failures[@]} -gt 0 ]]; then