lib/install/deps.go

   1 // Copyright (C) The Arvados Authors. All rights reserved.
   2 //
   3 // SPDX-License-Identifier: AGPL-3.0
   4
   5 package install
   6
   7 import (
   8         "bufio"
   9         "bytes"
  10         "context"
  11         "errors"
  12         "flag"
  13         "fmt"
  14         "io"
  15         "os"
  16         "os/exec"
  17         "os/user"
  18         "path/filepath"
  19         "strconv"
  20         "strings"
  21         "syscall"
  22         "time"
  23
  24         "git.arvados.org/arvados.git/lib/cmd"
  25         "git.arvados.org/arvados.git/sdk/go/ctxlog"
  26         "github.com/lib/pq"
  27 )
  28
  29 var Command cmd.Handler = &installCommand{}
  30
  31 const devtestDatabasePassword = "insecure_arvados_test"
  32
  33 type installCommand struct {
  34         ClusterType    string
  35         SourcePath     string
  36         PackageVersion string
  37         EatMyData      bool
  38 }
  39
  40 func (inst *installCommand) RunCommand(prog string, args []string, stdin io.Reader, stdout, stderr io.Writer) int {
  41         logger := ctxlog.New(stderr, "text", "info")
  42         ctx := ctxlog.Context(context.Background(), logger)
  43         ctx, cancel := context.WithCancel(ctx)
  44         defer cancel()
  45
  46         var err error
  47         defer func() {
  48                 if err != nil {
  49                         logger.WithError(err).Info("exiting")
  50                 }
  51         }()
  52
  53         flags := flag.NewFlagSet(prog, flag.ContinueOnError)
  54         flags.SetOutput(stderr)
  55         versionFlag := flags.Bool("version", false, "Write version information to stdout and exit 0")
  56         flags.StringVar(&inst.ClusterType, "type", "production", "cluster `type`: development, test, production, or package")
  57         flags.StringVar(&inst.SourcePath, "source", "/arvados", "source tree location (required for -type=package)")
  58         flags.StringVar(&inst.PackageVersion, "package-version", "0.0.0", "version string to embed in executable files")
  59         flags.BoolVar(&inst.EatMyData, "eatmydata", false, "use eatmydata to speed up install")
  60         err = flags.Parse(args)
  61         if err == flag.ErrHelp {
  62                 err = nil
  63                 return 0
  64         } else if err != nil {
  65                 return 2
  66         } else if *versionFlag {
  67                 return cmd.Version.RunCommand(prog, args, stdin, stdout, stderr)
  68         } else if len(flags.Args()) > 0 {
  69                 err = fmt.Errorf("unrecognized command line arguments: %v", flags.Args())
  70                 return 2
  71         }
  72
  73         var dev, test, prod, pkg bool
  74         switch inst.ClusterType {
  75         case "development":
  76                 dev = true
  77         case "test":
  78                 test = true
  79         case "production":
  80                 prod = true
  81         case "package":
  82                 pkg = true
  83         default:
  84                 err = fmt.Errorf("invalid cluster type %q (must be 'development', 'test', 'production', or 'package')", inst.ClusterType)
  85                 return 2
  86         }
  87
  88         if prod {
  89                 err = errors.New("production install is not yet implemented")
  90                 return 1
  91         }
  92
  93         osv, err := identifyOS()
  94         if err != nil {
  95                 return 1
  96         }
  97
  98         listdir, err := os.Open("/var/lib/apt/lists")
  99         if err != nil {
 100                 logger.Warnf("error while checking whether to run apt-get update: %s", err)
 101         } else if names, _ := listdir.Readdirnames(1); len(names) == 0 {
 102                 // Special case for a base docker image where the
 103                 // package cache has been deleted and all "apt-get
 104                 // install" commands will fail unless we fetch repos.
 105                 cmd := exec.CommandContext(ctx, "apt-get", "update")
 106                 cmd.Stdout = stdout
 107                 cmd.Stderr = stderr
 108                 err = cmd.Run()
 109                 if err != nil {
 110                         return 1
 111                 }
 112         }
 113
 114         if inst.EatMyData {
 115                 cmd := exec.CommandContext(ctx, "apt-get", "install", "--yes", "--no-install-recommends", "eatmydata")
 116                 cmd.Env = append(os.Environ(), "DEBIAN_FRONTEND=noninteractive")
 117                 cmd.Stdout = stdout
 118                 cmd.Stderr = stderr
 119                 err = cmd.Run()
 120                 if err != nil {
 121                         return 1
 122                 }
 123         }
 124
 125         pkgs := prodpkgs(osv)
 126
 127         if pkg {
 128                 pkgs = append(pkgs,
 129                         "dpkg-dev",
 130                         "eatmydata", // install it for later steps, even if we're not using it now
 131                         "rsync",
 132                 )
 133         }
 134
 135         if dev || test || pkg {
 136                 pkgs = append(pkgs,
 137                         "automake",
 138                         "bison",
 139                         "bsdmainutils",
 140                         "build-essential",
 141                         "cadaver",
 142                         "curl",
 143                         "cython3",
 144                         "default-jdk-headless",
 145                         "default-jre-headless",
 146                         "gettext",
 147                         "iceweasel",
 148                         "libattr1-dev",
 149                         "libcrypt-ssleay-perl",
 150                         "libfuse-dev",
 151                         "libgnutls28-dev",
 152                         "libjson-perl",
 153                         "libpam-dev",
 154                         "libpcre3-dev",
 155                         "libpq-dev",
 156                         "libreadline-dev",
 157                         "libssl-dev",
 158                         "libwww-perl",
 159                         "libxml2-dev",
 160                         "libxslt1-dev",
 161                         "linkchecker",
 162                         "lsof",
 163                         "make",
 164                         "net-tools",
 165                         "pandoc",
 166                         "perl-modules",
 167                         "pkg-config",
 168                         "postgresql",
 169                         "postgresql-contrib",
 170                         "python3-dev",
 171                         "python3-venv",
 172                         "python3-virtualenv",
 173                         "r-base",
 174                         "r-cran-testthat",
 175                         "r-cran-devtools",
 176                         "r-cran-knitr",
 177                         "r-cran-markdown",
 178                         "r-cran-roxygen2",
 179                         "r-cran-xml",
 180                         "sudo",
 181                         "wget",
 182                         "xvfb",
 183                 )
 184                 if dev || test {
 185                         pkgs = append(pkgs,
 186                                 "squashfs-tools", // for singularity
 187                         )
 188                 }
 189                 switch {
 190                 case osv.Debian && osv.Major >= 10:
 191                         pkgs = append(pkgs, "libcurl4")
 192                 default:
 193                         pkgs = append(pkgs, "libcurl3")
 194                 }
 195                 cmd := exec.CommandContext(ctx, "apt-get")
 196                 if inst.EatMyData {
 197                         cmd = exec.CommandContext(ctx, "eatmydata", "apt-get")
 198                 }
 199                 cmd.Args = append(cmd.Args, "install", "--yes", "--no-install-recommends")
 200                 cmd.Args = append(cmd.Args, pkgs...)
 201                 cmd.Env = append(os.Environ(), "DEBIAN_FRONTEND=noninteractive")
 202                 cmd.Stdout = stdout
 203                 cmd.Stderr = stderr
 204                 err = cmd.Run()
 205                 if err != nil {
 206                         return 1
 207                 }
 208         }
 209
 210         os.Mkdir("/var/lib/arvados", 0755)
 211         os.Mkdir("/var/lib/arvados/tmp", 0700)
 212         if prod || pkg {
 213                 os.Mkdir("/var/lib/arvados/wwwtmp", 0700)
 214                 u, er := user.Lookup("www-data")
 215                 if er != nil {
 216                         err = fmt.Errorf("user.Lookup(%q): %w", "www-data", er)
 217                         return 1
 218                 }
 219                 uid, _ := strconv.Atoi(u.Uid)
 220                 gid, _ := strconv.Atoi(u.Gid)
 221                 err = os.Chown("/var/lib/arvados/wwwtmp", uid, gid)
 222                 if err != nil {
 223                         return 1
 224                 }
 225         }
 226         rubyversion := "2.7.2"
 227         rubymajorversion := rubyversion[:strings.LastIndex(rubyversion, ".")]
 228         if haverubyversion, err := exec.Command("/var/lib/arvados/bin/ruby", "-v").CombinedOutput(); err == nil && bytes.HasPrefix(haverubyversion, []byte("ruby "+rubyversion)) {
 229                 logger.Print("ruby " + rubyversion + " already installed")
 230         } else {
 231                 err = inst.runBash(`
 232 tmp="$(mktemp -d)"
 233 trap 'rm -r "${tmp}"' ERR EXIT
 234 wget --progress=dot:giga -O- https://cache.ruby-lang.org/pub/ruby/`+rubymajorversion+`/ruby-`+rubyversion+`.tar.gz | tar -C "${tmp}" -xzf -
 235 cd "${tmp}/ruby-`+rubyversion+`"
 236 ./configure --disable-install-static-library --enable-shared --disable-install-doc --prefix /var/lib/arvados
 237 make -j8
 238 make install
 239 /var/lib/arvados/bin/gem install bundler --no-document
 240 `, stdout, stderr)
 241                 if err != nil {
 242                         return 1
 243                 }
 244         }
 245
 246         if !prod {
 247                 goversion := "1.16.3"
 248                 if havegoversion, err := exec.Command("/usr/local/bin/go", "version").CombinedOutput(); err == nil && bytes.HasPrefix(havegoversion, []byte("go version go"+goversion+" ")) {
 249                         logger.Print("go " + goversion + " already installed")
 250                 } else {
 251                         err = inst.runBash(`
 252 cd /tmp
 253 wget --progress=dot:giga -O- https://storage.googleapis.com/golang/go`+goversion+`.linux-amd64.tar.gz | tar -C /var/lib/arvados -xzf -
 254 ln -sf /var/lib/arvados/go/bin/* /usr/local/bin/
 255 `, stdout, stderr)
 256                         if err != nil {
 257                                 return 1
 258                         }
 259                 }
 260         }
 261
 262         if !prod && !pkg {
 263                 pjsversion := "1.9.8"
 264                 if havepjsversion, err := exec.Command("/usr/local/bin/phantomjs", "--version").CombinedOutput(); err == nil && string(havepjsversion) == "1.9.8\n" {
 265                         logger.Print("phantomjs " + pjsversion + " already installed")
 266                 } else {
 267                         err = inst.runBash(`
 268 PJS=phantomjs-`+pjsversion+`-linux-x86_64
 269 wget --progress=dot:giga -O- https://bitbucket.org/ariya/phantomjs/downloads/$PJS.tar.bz2 | tar -C /var/lib/arvados -xjf -
 270 ln -sf /var/lib/arvados/$PJS/bin/phantomjs /usr/local/bin/
 271 `, stdout, stderr)
 272                         if err != nil {
 273                                 return 1
 274                         }
 275                 }
 276
 277                 geckoversion := "0.24.0"
 278                 if havegeckoversion, err := exec.Command("/usr/local/bin/geckodriver", "--version").CombinedOutput(); err == nil && strings.Contains(string(havegeckoversion), " "+geckoversion+" ") {
 279                         logger.Print("geckodriver " + geckoversion + " already installed")
 280                 } else {
 281                         err = inst.runBash(`
 282 GD=v`+geckoversion+`
 283 wget --progress=dot:giga -O- https://github.com/mozilla/geckodriver/releases/download/$GD/geckodriver-$GD-linux64.tar.gz | tar -C /var/lib/arvados/bin -xzf - geckodriver
 284 ln -sf /var/lib/arvados/bin/geckodriver /usr/local/bin/
 285 `, stdout, stderr)
 286                         if err != nil {
 287                                 return 1
 288                         }
 289                 }
 290
 291                 nodejsversion := "v10.23.1"
 292                 if havenodejsversion, err := exec.Command("/usr/local/bin/node", "--version").CombinedOutput(); err == nil && string(havenodejsversion) == nodejsversion+"\n" {
 293                         logger.Print("nodejs " + nodejsversion + " already installed")
 294                 } else {
 295                         err = inst.runBash(`
 296 NJS=`+nodejsversion+`
 297 wget --progress=dot:giga -O- https://nodejs.org/dist/${NJS}/node-${NJS}-linux-x64.tar.xz | sudo tar -C /var/lib/arvados -xJf -
 298 ln -sf /var/lib/arvados/node-${NJS}-linux-x64/bin/{node,npm} /usr/local/bin/
 299 `, stdout, stderr)
 300                         if err != nil {
 301                                 return 1
 302                         }
 303                 }
 304
 305                 gradleversion := "5.3.1"
 306                 if havegradleversion, err := exec.Command("/usr/local/bin/gradle", "--version").CombinedOutput(); err == nil && strings.Contains(string(havegradleversion), "Gradle "+gradleversion+"\n") {
 307                         logger.Print("gradle " + gradleversion + " already installed")
 308                 } else {
 309                         err = inst.runBash(`
 310 G=`+gradleversion+`
 311 zip=/var/lib/arvados/tmp/gradle-${G}-bin.zip
 312 trap "rm ${zip}" ERR
 313 wget --progress=dot:giga -O${zip} https://services.gradle.org/distributions/gradle-${G}-bin.zip
 314 unzip -o -d /var/lib/arvados ${zip}
 315 ln -sf /var/lib/arvados/gradle-${G}/bin/gradle /usr/local/bin/
 316 rm ${zip}
 317 `, stdout, stderr)
 318                         if err != nil {
 319                                 return 1
 320                         }
 321                 }
 322
 323                 singularityversion := "3.5.2"
 324                 if havesingularityversion, err := exec.Command("/var/lib/arvados/bin/singularity", "--version").CombinedOutput(); err == nil && strings.Contains(string(havesingularityversion), singularityversion) {
 325                         logger.Print("singularity " + singularityversion + " already installed")
 326                 } else if dev || test {
 327                         err = inst.runBash(`
 328 S=`+singularityversion+`
 329 tmp=/var/lib/arvados/tmp/singularity
 330 trap "rm -r ${tmp}" ERR EXIT
 331 cd /var/lib/arvados/tmp
 332 git clone https://github.com/sylabs/singularity
 333 cd singularity
 334 git checkout v${S}
 335 ./mconfig --prefix=/var/lib/arvados
 336 make -C ./builddir
 337 make -C ./builddir install
 338 rm -r ${tmp}
 339 `, stdout, stderr)
 340                         if err != nil {
 341                                 return 1
 342                         }
 343                 }
 344
 345                 // The entry in /etc/locale.gen is "en_US.UTF-8"; once
 346                 // it's installed, locale -a reports it as
 347                 // "en_US.utf8".
 348                 wantlocale := "en_US.UTF-8"
 349                 if havelocales, err := exec.Command("locale", "-a").CombinedOutput(); err == nil && bytes.Contains(havelocales, []byte(strings.Replace(wantlocale+"\n", "UTF-", "utf", 1))) {
 350                         logger.Print("locale " + wantlocale + " already installed")
 351                 } else {
 352                         err = inst.runBash(`sed -i 's/^# *\(`+wantlocale+`\)/\1/' /etc/locale.gen && locale-gen`, stdout, stderr)
 353                         if err != nil {
 354                                 return 1
 355                         }
 356                 }
 357
 358                 var pgc struct {
 359                         Version       string
 360                         Cluster       string
 361                         Port          int
 362                         Status        string
 363                         Owner         string
 364                         DataDirectory string
 365                         LogFile       string
 366                 }
 367                 if pgLsclusters, err2 := exec.Command("pg_lsclusters", "--no-header").CombinedOutput(); err2 != nil {
 368                         err = fmt.Errorf("pg_lsclusters: %s", err2)
 369                         return 1
 370                 } else if pgclusters := strings.Split(strings.TrimSpace(string(pgLsclusters)), "\n"); len(pgclusters) != 1 {
 371                         logger.Warnf("pg_lsclusters returned %d postgresql clusters -- skipping postgresql initdb/startup, hope that's ok", len(pgclusters))
 372                 } else if _, err = fmt.Sscanf(pgclusters[0], "%s %s %d %s %s %s %s", &pgc.Version, &pgc.Cluster, &pgc.Port, &pgc.Status, &pgc.Owner, &pgc.DataDirectory, &pgc.LogFile); err != nil {
 373                         err = fmt.Errorf("error parsing pg_lsclusters output: %s", err)
 374                         return 1
 375                 } else if pgc.Status == "online" {
 376                         logger.Infof("postgresql cluster %s-%s is online", pgc.Version, pgc.Cluster)
 377                 } else {
 378                         logger.Infof("postgresql cluster %s-%s is %s; trying to start", pgc.Version, pgc.Cluster, pgc.Status)
 379                         cmd := exec.Command("pg_ctlcluster", "--foreground", pgc.Version, pgc.Cluster, "start")
 380                         cmd.Stdout = stdout
 381                         cmd.Stderr = stderr
 382                         err = cmd.Start()
 383                         if err != nil {
 384                                 return 1
 385                         }
 386                         defer func() {
 387                                 cmd.Process.Signal(syscall.SIGTERM)
 388                                 logger.Info("sent SIGTERM; waiting for postgres to shut down")
 389                                 cmd.Wait()
 390                         }()
 391                         err = waitPostgreSQLReady()
 392                         if err != nil {
 393                                 return 1
 394                         }
 395                 }
 396
 397                 if os.Getpid() == 1 {
 398                         // We are the init process (presumably in a
 399                         // docker container) so although postgresql is
 400                         // installed, it's not running, and initdb
 401                         // might never have been run.
 402                 }
 403
 404                 var needcoll []string
 405                 // If the en_US.UTF-8 locale wasn't installed when
 406                 // postgresql initdb ran, it needs to be added
 407                 // explicitly before we can use it in our test suite.
 408                 for _, collname := range []string{"en_US", "en_US.UTF-8"} {
 409                         cmd := exec.Command("sudo", "-u", "postgres", "psql", "-t", "-c", "SELECT 1 FROM pg_catalog.pg_collation WHERE collname='"+collname+"' AND collcollate IN ('en_US.UTF-8', 'en_US.utf8')")
 410                         cmd.Dir = "/"
 411                         out, err2 := cmd.CombinedOutput()
 412                         if err != nil {
 413                                 err = fmt.Errorf("error while checking postgresql collations: %s", err2)
 414                                 return 1
 415                         }
 416                         if strings.Contains(string(out), "1") {
 417                                 logger.Infof("postgresql supports collation %s", collname)
 418                         } else {
 419                                 needcoll = append(needcoll, collname)
 420                         }
 421                 }
 422                 if len(needcoll) > 0 && os.Getpid() != 1 {
 423                         // In order for the CREATE COLLATION statement
 424                         // below to work, the locale must have existed
 425                         // when PostgreSQL started up. If we're
 426                         // running as init, we must have started
 427                         // PostgreSQL ourselves after installing the
 428                         // locales. Otherwise, it might need a
 429                         // restart, so we attempt to restart it with
 430                         // systemd.
 431                         if err = inst.runBash(`sudo systemctl restart postgresql`, stdout, stderr); err != nil {
 432                                 logger.Warn("`systemctl restart postgresql` failed; hoping postgresql does not need to be restarted")
 433                         } else if err = waitPostgreSQLReady(); err != nil {
 434                                 return 1
 435                         }
 436                 }
 437                 for _, collname := range needcoll {
 438                         cmd := exec.Command("sudo", "-u", "postgres", "psql", "-c", "CREATE COLLATION \""+collname+"\" (LOCALE = \"en_US.UTF-8\")")
 439                         cmd.Stdout = stdout
 440                         cmd.Stderr = stderr
 441                         cmd.Dir = "/"
 442                         err = cmd.Run()
 443                         if err != nil {
 444                                 err = fmt.Errorf("error adding postgresql collation %s: %s", collname, err)
 445                                 return 1
 446                         }
 447                 }
 448
 449                 withstuff := "WITH LOGIN SUPERUSER ENCRYPTED PASSWORD " + pq.QuoteLiteral(devtestDatabasePassword)
 450                 cmd := exec.Command("sudo", "-u", "postgres", "psql", "-c", "ALTER ROLE arvados "+withstuff)
 451                 cmd.Dir = "/"
 452                 if err := cmd.Run(); err == nil {
 453                         logger.Print("arvados role exists; superuser privileges added, password updated")
 454                 } else {
 455                         cmd := exec.Command("sudo", "-u", "postgres", "psql", "-c", "CREATE ROLE arvados "+withstuff)
 456                         cmd.Dir = "/"
 457                         cmd.Stdout = stdout
 458                         cmd.Stderr = stderr
 459                         err = cmd.Run()
 460                         if err != nil {
 461                                 return 1
 462                         }
 463                 }
 464         }
 465
 466         if prod || pkg {
 467                 // Install Rails apps to /var/lib/arvados/{railsapi,workbench1}/
 468                 for dstdir, srcdir := range map[string]string{
 469                         "railsapi":   "services/api",
 470                         "workbench1": "apps/workbench",
 471                 } {
 472                         fmt.Fprintf(stderr, "building %s...\n", srcdir)
 473                         cmd := exec.Command("rsync",
 474                                 "-a", "--no-owner", "--no-group", "--delete-after", "--delete-excluded",
 475                                 "--exclude", "/coverage",
 476                                 "--exclude", "/log",
 477                                 "--exclude", "/tmp",
 478                                 "--exclude", "/vendor",
 479                                 "--exclude", "/config/environments",
 480                                 "./", "/var/lib/arvados/"+dstdir+"/")
 481                         cmd.Dir = filepath.Join(inst.SourcePath, srcdir)
 482                         cmd.Stdout = stdout
 483                         cmd.Stderr = stderr
 484                         err = cmd.Run()
 485                         if err != nil {
 486                                 return 1
 487                         }
 488                         for _, cmdline := range [][]string{
 489                                 {"mkdir", "-p", "log", "tmp", ".bundle", "/var/www/.gem", "/var/www/.bundle", "/var/www/.passenger"},
 490                                 {"touch", "log/production.log"},
 491                                 {"chown", "-R", "--from=root", "www-data:www-data", "/var/www/.gem", "/var/www/.bundle", "/var/www/.passenger", "log", "tmp", ".bundle", "Gemfile.lock", "config.ru", "config/environment.rb"},
 492                                 {"sudo", "-u", "www-data", "/var/lib/arvados/bin/gem", "install", "--user", "--conservative", "--no-document", "bundler:1.16.6", "bundler:1.17.3", "bundler:2.0.2"},
 493                                 {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "install", "--deployment", "--jobs", "8", "--path", "/var/www/.gem"},
 494                                 {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "build-native-support"},
 495                                 {"sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "install-standalone-runtime"},
 496                         } {
 497                                 cmd = exec.Command(cmdline[0], cmdline[1:]...)
 498                                 cmd.Dir = "/var/lib/arvados/" + dstdir
 499                                 cmd.Stdout = stdout
 500                                 cmd.Stderr = stderr
 501                                 fmt.Fprintf(stderr, "... %s\n", cmd.Args)
 502                                 err = cmd.Run()
 503                                 if err != nil {
 504                                         return 1
 505                                 }
 506                         }
 507                         cmd = exec.Command("sudo", "-u", "www-data", "/var/lib/arvados/bin/bundle", "exec", "passenger-config", "validate-install")
 508                         cmd.Dir = "/var/lib/arvados/" + dstdir
 509                         cmd.Stdout = stdout
 510                         cmd.Stderr = stderr
 511                         err = cmd.Run()
 512                         if err != nil && !strings.Contains(err.Error(), "exit status 2") {
 513                                 // Exit code 2 indicates there were warnings (like
 514                                 // "other passenger installations have been detected",
 515                                 // which we can't expect to avoid) but no errors.
 516                                 // Other non-zero exit codes (1, 9) indicate errors.
 517                                 return 1
 518                         }
 519                 }
 520
 521                 // Install Go programs to /var/lib/arvados/bin/
 522                 for _, srcdir := range []string{
 523                         "cmd/arvados-client",
 524                         "cmd/arvados-server",
 525                         "services/arv-git-httpd",
 526                         "services/crunch-dispatch-local",
 527                         "services/crunch-dispatch-slurm",
 528                         "services/health",
 529                         "services/keep-balance",
 530                         "services/keep-web",
 531                         "services/keepproxy",
 532                         "services/keepstore",
 533                         "services/ws",
 534                 } {
 535                         fmt.Fprintf(stderr, "building %s...\n", srcdir)
 536                         cmd := exec.Command("go", "install", "-ldflags", "-X git.arvados.org/arvados.git/lib/cmd.version="+inst.PackageVersion+" -X main.version="+inst.PackageVersion)
 537                         cmd.Env = append(cmd.Env, os.Environ()...)
 538                         cmd.Env = append(cmd.Env, "GOBIN=/var/lib/arvados/bin")
 539                         cmd.Dir = filepath.Join(inst.SourcePath, srcdir)
 540                         cmd.Stdout = stdout
 541                         cmd.Stderr = stderr
 542                         err = cmd.Run()
 543                         if err != nil {
 544                                 return 1
 545                         }
 546                 }
 547
 548                 // Copy assets from source tree to /var/lib/arvados/share
 549                 cmd := exec.Command("install", "-v", "-t", "/var/lib/arvados/share", filepath.Join(inst.SourcePath, "sdk/python/tests/nginx.conf"))
 550                 cmd.Stdout = stdout
 551                 cmd.Stderr = stderr
 552                 err = cmd.Run()
 553                 if err != nil {
 554                         return 1
 555                 }
 556         }
 557
 558         return 0
 559 }
 560
 561 type osversion struct {
 562         Debian bool
 563         Ubuntu bool
 564         Centos bool
 565         Major  int
 566 }
 567
 568 func identifyOS() (osversion, error) {
 569         var osv osversion
 570         f, err := os.Open("/etc/os-release")
 571         if err != nil {
 572                 return osv, err
 573         }
 574         defer f.Close()
 575
 576         kv := map[string]string{}
 577         scanner := bufio.NewScanner(f)
 578         for scanner.Scan() {
 579                 line := strings.TrimSpace(scanner.Text())
 580                 if strings.HasPrefix(line, "#") {
 581                         continue
 582                 }
 583                 toks := strings.SplitN(line, "=", 2)
 584                 if len(toks) != 2 {
 585                         return osv, fmt.Errorf("invalid line in /etc/os-release: %q", line)
 586                 }
 587                 k := toks[0]
 588                 v := strings.Trim(toks[1], `"`)
 589                 if v == toks[1] {
 590                         v = strings.Trim(v, `'`)
 591                 }
 592                 kv[k] = v
 593         }
 594         if err = scanner.Err(); err != nil {
 595                 return osv, err
 596         }
 597         switch kv["ID"] {
 598         case "ubuntu":
 599                 osv.Ubuntu = true
 600         case "debian":
 601                 osv.Debian = true
 602         case "centos":
 603                 osv.Centos = true
 604         default:
 605                 return osv, fmt.Errorf("unsupported ID in /etc/os-release: %q", kv["ID"])
 606         }
 607         vstr := kv["VERSION_ID"]
 608         if i := strings.Index(vstr, "."); i > 0 {
 609                 vstr = vstr[:i]
 610         }
 611         osv.Major, err = strconv.Atoi(vstr)
 612         if err != nil {
 613                 return osv, fmt.Errorf("incomprehensible VERSION_ID in /etc/os-release: %q", kv["VERSION_ID"])
 614         }
 615         return osv, nil
 616 }
 617
 618 func waitPostgreSQLReady() error {
 619         for deadline := time.Now().Add(10 * time.Second); ; {
 620                 output, err := exec.Command("pg_isready").CombinedOutput()
 621                 if err == nil {
 622                         return nil
 623                 } else if time.Now().After(deadline) {
 624                         return fmt.Errorf("timed out waiting for pg_isready (%q)", output)
 625                 } else {
 626                         time.Sleep(time.Second)
 627                 }
 628         }
 629 }
 630
 631 func (inst *installCommand) runBash(script string, stdout, stderr io.Writer) error {
 632         cmd := exec.Command("bash", "-")
 633         if inst.EatMyData {
 634                 cmd = exec.Command("eatmydata", "bash", "-")
 635         }
 636         cmd.Stdin = bytes.NewBufferString("set -ex -o pipefail\n" + script)
 637         cmd.Stdout = stdout
 638         cmd.Stderr = stderr
 639         return cmd.Run()
 640 }
 641
 642 func prodpkgs(osv osversion) []string {
 643         pkgs := []string{
 644                 "ca-certificates",
 645                 "curl",
 646                 "fuse",
 647                 "git",
 648                 "gitolite3",
 649                 "graphviz",
 650                 "haveged",
 651                 "libcurl3-gnutls",
 652                 "libxslt1.1",
 653                 "nginx",
 654                 "python",
 655                 "sudo",
 656         }
 657         if osv.Debian || osv.Ubuntu {
 658                 if osv.Debian && osv.Major == 8 {
 659                         pkgs = append(pkgs, "libgnutls-deb0-28") // sdk/cwl
 660                 } else if osv.Debian && osv.Major >= 10 || osv.Ubuntu && osv.Major >= 16 {
 661                         pkgs = append(pkgs, "python3-distutils") // sdk/cwl
 662                 }
 663                 return append(pkgs,
 664                         "g++",
 665                         "libcurl4-openssl-dev", // services/api
 666                         "libpq-dev",
 667                         "libpython2.7", // services/fuse
 668                         "mime-support", // keep-web
 669                         "zlib1g-dev",   // services/api
 670                 )
 671         } else if osv.Centos {
 672                 return append(pkgs,
 673                         "fuse-libs", // services/fuse
 674                         "gcc",
 675                         "gcc-c++",
 676                         "libcurl-devel",    // services/api
 677                         "mailcap",          // keep-web
 678                         "postgresql-devel", // services/api
 679                 )
 680         } else {
 681                 panic("os version not supported")
 682         }
 683 }
 684
 685 func ProductionDependencies() ([]string, error) {
 686         osv, err := identifyOS()
 687         if err != nil {
 688                 return nil, err
 689         }
 690         return prodpkgs(osv), nil
 691 }