doc/user/cwl/federated/extract.cwl

   1 cwlVersion: v1.0
   2 class: CommandLineTool
   3 requirements:
   4   SchemaDefRequirement:
   5     types:
   6       - $import: FileOnCluster.yml
   7 inputs:
   8   select_column: string
   9   select_values: File
  10   dataset: 'FileOnCluster.yml#FileOnCluster'
  11   extract_py:
  12     type: File
  13     default:
  14       class: File
  15       location: extract.py
  16 outputs:
  17   out:
  18     type: File
  19     outputBinding:
  20       glob: extracted.csv
  21
  22 arguments: [python, $(inputs.extract_py), $(inputs.select_column), $(inputs.select_values), $(inputs.dataset.file), $(inputs.dataset.cluster)]