apps/workbench/app/views/work_units/_component_detail.html.erb

   1 <%
   2   collections = [current_obj.outputs, current_obj.docker_image].flatten.compact.uniq
   3   collections_pdhs = collections.select {|x| !CollectionsHelper.match(x).nil?}.uniq.compact
   4   collections_uuids = collections - collections_pdhs
   5   preload_collections_for_objects collections_uuids if collections_uuids.any?
   6   preload_for_pdhs collections_pdhs if collections_pdhs.any?
   7
   8   preload_objects_for_dataclass(Repository, [current_obj.repository], :name) if current_obj.repository
   9 %>
  10
  11       <div class="container">
  12         <div class="row">
  13           <div class="col-md-5">
  14             <% if current_obj.uuid.nil? %>
  15               No <%= current_obj.title %> has been submitted yet.
  16             <% else %>
  17             <table>
  18               <% keys = [:uuid, :modified_by_user_uuid, :created_at, :started_at, :finished_at, :container_uuid] %>
  19               <% keys << :log_collection if @object.uuid != current_obj.uuid %>
  20               <% keys << :outputs %>
  21               <% keys.each do |k| %>
  22                 <%
  23                   val = current_obj.send(k) if current_obj.respond_to?(k)
  24                   if k == :outputs
  25                     has_val = val.andand.any?
  26                   elsif k == :log_collection and current_obj.state_label == "Running"
  27                     has_val = true
  28                   else
  29                     has_val = val
  30                   end
  31                 %>
  32                 <% if has_val %>
  33                 <tr>
  34                   <td style="padding-right: 1em">
  35                     <%= k.to_s %>:
  36                   </td>
  37                   <td>
  38                     <% if k == :uuid %>
  39                       <%= link_to_arvados_object_if_readable(val, val, link_text: val) %>
  40                     <% elsif k.to_s.end_with? 'uuid' %>
  41                       <%= link_to_arvados_object_if_readable(val, val, friendly_name: true) %>
  42                     <% elsif k.to_s.end_with? '_at' %>
  43                       <%= render_localized_date(val) %>
  44                     <% elsif k == :outputs and val.any? %>
  45                       <% if val.size == 1 %>
  46                         <%= link_to_arvados_object_if_readable(val[0], 'Output data not available', friendly_name: true) %>
  47                       <% else %>
  48                         <%= render partial: 'work_units/show_outputs', locals: {id: current_obj.uuid, outputs: val, align:""} %>
  49                       <% end %>
  50                     <% elsif k == :log_collection %>
  51                       <%= render partial: 'work_units/show_log_link', locals: {wu: current_obj} %>
  52                     <% else %>
  53                       <%= val %>
  54                     <% end %>
  55                   </td>
  56                 </tr>
  57                 <% end %>
  58               <% end %>
  59             </table>
  60             <% end %>
  61           </div>
  62           <div class="col-md-6">
  63             <table>
  64               <% # link to repo tree/file only if the repo is readable and the commit is a sha1
  65                  repo = (/^[0-9a-f]{40}$/ =~ current_obj.script_version and
  66                          current_obj.repository and
  67                          object_for_dataclass(Repository, current_obj.repository, :name))
  68                  repo = nil unless repo.andand.http_fetch_url
  69                  %>
  70               <% [:priority, :script, :repository, :script_version, :supplied_script_version, :nondeterministic,
  71                   :runtime_constraints, :requesting_container_uuid].each do |k| %>
  72                 <% val = current_obj.send(k) if current_obj.respond_to?(k) %>
  73                 <% if val %>
  74                 <tr valign="top">
  75                   <td style="padding-right: 1em">
  76                     <%= k.to_s %>:
  77                   </td>
  78                   <td>
  79                     <% if repo and k == :repository %>
  80                       <%= link_to val, show_repository_tree_path(id: repo.uuid, commit: current_obj.script_version, path: '/') %>
  81                     <% elsif repo and k == :script %>
  82                       <%= link_to val, show_repository_blob_path(id: repo.uuid, commit: current_obj.script_version, path: 'crunch_scripts/'+current_obj.script) %>
  83                     <% elsif repo and k == :script_version %>
  84                       <%= link_to val, show_repository_commit_path(id: repo.uuid, commit: current_obj.script_version) %>
  85                     <% elsif k == :runtime_constraints and val.any? %>
  86                       <%= render partial: 'work_units/show_table_data', locals: {id: current_obj.uuid, name: k, data_map: val} %>
  87                     <% elsif k.to_s.end_with? 'uuid' %>
  88                       <%= link_to_arvados_object_if_readable(val, val, friendly_name: true) %>
  89                     <% else %>
  90                       <%= val %>
  91                     <% end %>
  92                   </td>
  93                 </tr>
  94                 <% end %>
  95               <% end %>
  96
  97               <%
  98                 mounts = current_obj.send(:mounts) if current_obj.respond_to?(:mounts)
  99                 mount_wf = mounts.andand[:"/var/lib/cwl/workflow.json"]
 100                 mount_wf = mount_wf[5..-1] if mount_wf.andand.is_a?(String) and mount_wf.start_with?('keep:')
 101                 mount_wf_cls = resource_class_for_uuid(mount_wf) if mount_wf
 102               %>
 103               <tr>
 104                 <% if mount_wf_cls == Collection %>
 105                   <td style="padding-right: 1em">
 106                     workflow.json:
 107                   </td>
 108                   <td>
 109                     <%= link_to_if_arvados_object mount_wf, friendly_name: true %>
 110                   </td>
 111                 <% end %>
 112               </tr>
 113
 114               <% if current_obj.runtime_constraints.andand[:docker_image] and current_obj.docker_image %>
 115                 <tr>
 116                   <td style="padding-right: 1em">
 117                     docker_image:
 118                   </td>
 119                   <td>
 120                     <%= current_obj.runtime_constraints[:docker_image] %>
 121                   </td>
 122                 </tr>
 123                 <tr>
 124                   <td style="padding-right: 1em">
 125                     docker_image_locator:
 126                   </td>
 127                   <td>
 128                     <%= link_to_arvados_object_if_readable(current_obj.docker_image,
 129                       current_obj.docker_image, friendly_name: true) %>
 130                   </td>
 131                 </tr>
 132               <% elsif current_obj.docker_image %>
 133                 <tr>
 134                   <td style="padding-right: 1em">
 135                     docker_image_locator:
 136                   </td>
 137                   <td>
 138                     <%= link_to_arvados_object_if_readable(current_obj.docker_image,
 139                       current_obj.docker_image, friendly_name: true) %>
 140                   </td>
 141                 </tr>
 142               <% end %>
 143             </table>
 144           </div>
 145
 146           <div class="col-md-12">
 147             <table style="width:100%;">
 148               <col width="15%" />
 149               <col width="85%" />
 150               <% [:command].each do |k| %>
 151                 <% val = current_obj.send(k) if current_obj.respond_to?(k) %>
 152                 <% if val %>
 153                 <tr>
 154                   <td valign="top">
 155                     <%= k.to_s %>:
 156                   </td>
 157                   <td>
 158                     <% if k == :command %>
 159                       <div style="max-height:200px; overflow-y:auto;">
 160                         <%=val%>
 161                       </div>
 162                     <% else %>
 163                       <%= val %>
 164                     <% end %>
 165                   </td>
 166                 </tr>
 167                 <% end %>
 168               <% end %>
 169
 170               <%
 171                 mounts = current_obj.send(:mounts) if current_obj.respond_to?(:mounts)
 172                 input_obj = mounts.andand[:"/var/lib/cwl/cwl.input.json"].andand[:content]
 173                 mnt_inputs = JSON.pretty_generate(input_obj) if input_obj
 174               %>
 175               <% if mnt_inputs %>
 176                 <tr>
 177                   <td valign="top">
 178                     cwl.input.json:
 179                   </td>
 180                   <td>
 181                     <div style="max-height:200px; overflow:auto;">
 182                       <% mnt_inputs.each_line do |l| %>
 183                         <% text_part = l %>
 184                           <% match = l.match /(.*)(\"keep:.*?\")/ %>
 185                           <% if match and match.size == 3 %>
 186                             <% text_part = match[1] %>
 187                             <% loc_part = match[2][6..-2] %>
 188                           <% end %>
 189                           <span style="white-space: pre-wrap; margin: none;"><%= text_part %><%= if loc_part then link_to_arvados_object_if_readable(loc_part, loc_part, friendly_name: true) end %> <% if loc_part then %> <br/> <% end %></span>
 190                       <% end %>
 191                     </div>
 192                   </td>
 193                 </tr>
 194               <% end %>
 195             </table>
 196           </div>
 197
 198         </div>
 199
 200         <% if current_obj.parameters and !current_obj.parameters.empty? %>
 201         <div class="row">
 202           <div class="col-md-6">
 203             <p>script_parameters:</p>
 204             <pre><%= JSON.pretty_generate(current_obj.parameters) rescue nil %></pre>
 205           </div>
 206         </div>
 207         <% end %>
 208       </div>