sdk/cwl/test_with_arvbox.sh

   1 #!/bin/sh
   2
   3 if ! which arvbox >/dev/null ; then
   4     export PATH=$PATH:$(readlink -f $(dirname $0)/../../tools/arvbox/bin)
   5 fi
   6
   7 reset_container=1
   8 leave_running=0
   9 config=dev
  10 docker_pull=1
  11
  12 while test -n "$1" ; do
  13     arg="$1"
  14     case "$arg" in
  15         --no-reset-container)
  16             reset_container=0
  17             shift
  18             ;;
  19         --leave-running)
  20             leave_running=1
  21             shift
  22             ;;
  23         --config)
  24             config=$2
  25             shift ; shift
  26             ;;
  27         --no-docker-pull)
  28             docker_pull=0
  29             shift
  30             ;;
  31         -h|--help)
  32             echo "$0 [--no-reset-container] [--leave-running] [--no-docker-pull] [--config dev|localdemo]"
  33             exit
  34             ;;
  35         *)
  36             break
  37             ;;
  38     esac
  39 done
  40
  41 if test -z "$ARVBOX_CONTAINER" ; then
  42    export ARVBOX_CONTAINER=cwltest
  43 fi
  44
  45 if test $reset_container = 1 ; then
  46     arvbox reset -f
  47 fi
  48
  49 arvbox start $config
  50
  51 arvbox pipe <<EOF
  52 set -eu -o pipefail
  53
  54 . /usr/local/lib/arvbox/common.sh
  55
  56 cd /usr/src/arvados/sdk/cwl
  57 python setup.py sdist
  58 pip_install \$(ls -r dist/arvados-cwl-runner-*.tar.gz | head -n1)
  59
  60 mkdir -p /tmp/cwltest
  61 cd /tmp/cwltest
  62 if ! test -d common-workflow-language ; then
  63   git clone https://github.com/common-workflow-language/common-workflow-language.git
  64 fi
  65 cd common-workflow-language
  66 git pull
  67 export ARVADOS_API_HOST=localhost:8000
  68 export ARVADOS_API_HOST_INSECURE=1
  69 export ARVADOS_API_TOKEN=\$(cat /var/lib/arvados/superuser_token)
  70
  71 if test $docker_pull = 1 ; then
  72   arv-keepdocker --pull arvados/jobs
  73 fi
  74
  75 cat >/tmp/cwltest/arv-cwl-jobs <<EOF2
  76 #!/bin/sh
  77 exec arvados-cwl-runner --api=jobs \\\$@
  78 EOF2
  79 chmod +x /tmp/cwltest/arv-cwl-jobs
  80
  81 cat >/tmp/cwltest/arv-cwl-containers <<EOF2
  82 #!/bin/sh
  83 exec arvados-cwl-runner --api=containers \\\$@
  84 EOF2
  85 chmod +x /tmp/cwltest/arv-cwl-containers
  86
  87 env
  88 exec ./run_test.sh $@
  89 EOF
  90
  91 CODE=$?
  92
  93 if test $leave_running = 0 ; then
  94     arvbox stop
  95 fi
  96
  97 exit $CODE