1 // Copyright (C) The Arvados Authors. All rights reserved.
3 // SPDX-License-Identifier: AGPL-3.0
25 "git.arvados.org/arvados.git/sdk/go/arvados"
26 "git.arvados.org/arvados.git/sdk/go/arvadosclient"
27 "git.arvados.org/arvados.git/sdk/go/arvadostest"
28 "git.arvados.org/arvados.git/sdk/go/manifest"
29 "golang.org/x/net/context"
34 // Gocheck boilerplate
35 func TestCrunchExec(t *testing.T) {
39 var _ = Suite(&TestSuite{})
41 type TestSuite struct {
42 client *arvados.Client
44 runner *ContainerRunner
45 executor *stubExecutor
47 testDispatcherKeepClient KeepTestClient
48 testContainerKeepClient KeepTestClient
51 func (s *TestSuite) SetUpTest(c *C) {
53 s.client = arvados.NewClientFromEnv()
54 s.executor = &stubExecutor{}
56 s.api = &ArvTestClient{}
57 s.runner, err = NewContainerRunner(s.client, s.api, &s.testDispatcherKeepClient, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
59 s.runner.executor = s.executor
60 s.runner.MkArvClient = func(token string) (IArvadosClient, IKeepClient, *arvados.Client, error) {
61 return s.api, &s.testContainerKeepClient, s.client, nil
63 s.runner.RunArvMount = func(cmd []string, tok string) (*exec.Cmd, error) {
64 s.runner.ArvMountPoint = s.keepmount
67 s.keepmount = c.MkDir()
68 err = os.Mkdir(s.keepmount+"/by_id", 0755)
70 err = os.Mkdir(s.keepmount+"/by_id/"+arvadostest.DockerImage112PDH, 0755)
72 err = ioutil.WriteFile(s.keepmount+"/by_id/"+arvadostest.DockerImage112PDH+"/"+arvadostest.DockerImage112Filename, []byte("#notarealtarball"), 0644)
73 err = os.Mkdir(s.keepmount+"/by_id/"+fakeInputCollectionPDH, 0755)
75 err = ioutil.WriteFile(s.keepmount+"/by_id/"+fakeInputCollectionPDH+"/input.json", []byte(`{"input":true}`), 0644)
77 s.runner.ArvMountPoint = s.keepmount
80 type ArvTestClient struct {
83 Content []arvadosclient.Dict
86 Logs map[string]*bytes.Buffer
92 type KeepTestClient struct {
95 StorageClasses []string
98 type stubExecutor struct {
104 created containerSpec
106 waitSleep time.Duration
115 func (e *stubExecutor) LoadImage(imageId string, tarball string, container arvados.Container, keepMount string,
116 containerClient *arvados.Client) error {
120 func (e *stubExecutor) Runtime() string { return "stub" }
121 func (e *stubExecutor) Create(spec containerSpec) error { e.created = spec; return e.createErr }
122 func (e *stubExecutor) Start() error { e.exit = make(chan int, 1); go e.runFunc(); return e.startErr }
123 func (e *stubExecutor) CgroupID() string { return "cgroupid" }
124 func (e *stubExecutor) Stop() error { e.stopped = true; go func() { e.exit <- -1 }(); return e.stopErr }
125 func (e *stubExecutor) Close() { e.closed = true }
126 func (e *stubExecutor) Wait(context.Context) (int, error) {
127 return <-e.exit, e.waitErr
130 const fakeInputCollectionPDH = "ffffffffaaaaaaaa88888888eeeeeeee+1234"
132 var hwManifest = ". 82ab40c24fc8df01798e57ba66795bb1+841216+Aa124ac75e5168396c73c0a18eda641a4f41791c0@569fa8c3 0:841216:9c31ee32b3d15268a0754e8edc74d4f815ee014b693bc5109058e431dd5caea7.tar\n"
133 var hwPDH = "a45557269dcb65a6b78f9ac061c0850b+120"
134 var hwImageID = "9c31ee32b3d15268a0754e8edc74d4f815ee014b693bc5109058e431dd5caea7"
136 var otherManifest = ". 68a84f561b1d1708c6baff5e019a9ab3+46+Ae5d0af96944a3690becb1decdf60cc1c937f556d@5693216f 0:46:md5sum.txt\n"
137 var otherPDH = "a3e8f74c6f101eae01fa08bfb4e49b3a+54"
139 var normalizedManifestWithSubdirs = `. 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 0:9:file1_in_main.txt 9:18:file2_in_main.txt 0:27:zzzzz-8i9sb-bcdefghijkdhvnk.log.txt
140 ./subdir1 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 0:9:file1_in_subdir1.txt 9:18:file2_in_subdir1.txt
141 ./subdir1/subdir2 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 0:9:file1_in_subdir2.txt 9:18:file2_in_subdir2.txt
144 var normalizedWithSubdirsPDH = "a0def87f80dd594d4675809e83bd4f15+367"
146 var denormalizedManifestWithSubdirs = ". 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 0:9:file1_in_main.txt 9:18:file2_in_main.txt 0:27:zzzzz-8i9sb-bcdefghijkdhvnk.log.txt 0:10:subdir1/file1_in_subdir1.txt 10:17:subdir1/file2_in_subdir1.txt\n"
147 var denormalizedWithSubdirsPDH = "b0def87f80dd594d4675809e83bd4f15+367"
149 var fakeAuthUUID = "zzzzz-gj3su-55pqoyepgi2glem"
150 var fakeAuthToken = "a3ltuwzqcu2u4sc0q7yhpc2w7s00fdcqecg5d6e0u3pfohmbjt"
152 func (client *ArvTestClient) Create(resourceType string,
153 parameters arvadosclient.Dict,
154 output interface{}) error {
157 defer client.Mutex.Unlock()
160 client.Content = append(client.Content, parameters)
162 if resourceType == "logs" {
163 et := parameters["log"].(arvadosclient.Dict)["event_type"].(string)
164 if client.Logs == nil {
165 client.Logs = make(map[string]*bytes.Buffer)
167 if client.Logs[et] == nil {
168 client.Logs[et] = &bytes.Buffer{}
170 client.Logs[et].Write([]byte(parameters["log"].(arvadosclient.Dict)["properties"].(map[string]string)["text"]))
173 if resourceType == "collections" && output != nil {
174 mt := parameters["collection"].(arvadosclient.Dict)["manifest_text"].(string)
175 outmap := output.(*arvados.Collection)
176 outmap.PortableDataHash = fmt.Sprintf("%x+%d", md5.Sum([]byte(mt)), len(mt))
177 outmap.UUID = fmt.Sprintf("zzzzz-4zz18-%15.15x", md5.Sum([]byte(mt)))
183 func (client *ArvTestClient) Call(method, resourceType, uuid, action string, parameters arvadosclient.Dict, output interface{}) error {
185 case method == "GET" && resourceType == "containers" && action == "auth":
186 return json.Unmarshal([]byte(`{
187 "kind": "arvados#api_client_authorization",
188 "uuid": "`+fakeAuthUUID+`",
189 "api_token": "`+fakeAuthToken+`"
191 case method == "GET" && resourceType == "containers" && action == "secret_mounts":
192 if client.secretMounts != nil {
193 return json.Unmarshal(client.secretMounts, output)
195 return json.Unmarshal([]byte(`{"secret_mounts":{}}`), output)
197 return fmt.Errorf("Not found")
201 func (client *ArvTestClient) CallRaw(method, resourceType, uuid, action string,
202 parameters arvadosclient.Dict) (reader io.ReadCloser, err error) {
204 if method == "GET" && resourceType == "nodes" && uuid == "" && action == "" {
206 "kind": "arvados#nodeList",
208 "uuid": "zzzzz-7ekkf-2z3mc76g2q73aio",
209 "hostname": "compute2",
210 "properties": {"total_cpu_cores": 16}
212 } else if method == "GET" && resourceType == "containers" && action == "" && !client.callraw {
214 j, err = json.Marshal(map[string]interface{}{
215 "items": []interface{}{client.Container},
216 "kind": "arvados#nodeList",
219 j, err = json.Marshal(client.Container)
223 "command": ["sleep", "1"],
224 "container_image": "` + arvadostest.DockerImage112PDH + `",
227 "mounts": {"/tmp": {"kind": "tmp"}, "/json": {"kind": "json", "content": {"number": 123456789123456789}}},
228 "output_path": "/tmp",
230 "runtime_constraints": {}
233 return ioutil.NopCloser(bytes.NewReader(j)), err
236 func (client *ArvTestClient) Get(resourceType string, uuid string, parameters arvadosclient.Dict, output interface{}) error {
237 if resourceType == "collections" {
239 output.(*arvados.Collection).ManifestText = hwManifest
240 } else if uuid == otherPDH {
241 output.(*arvados.Collection).ManifestText = otherManifest
242 } else if uuid == normalizedWithSubdirsPDH {
243 output.(*arvados.Collection).ManifestText = normalizedManifestWithSubdirs
244 } else if uuid == denormalizedWithSubdirsPDH {
245 output.(*arvados.Collection).ManifestText = denormalizedManifestWithSubdirs
248 if resourceType == "containers" {
249 (*output.(*arvados.Container)) = client.Container
254 func (client *ArvTestClient) Update(resourceType string, uuid string, parameters arvadosclient.Dict, output interface{}) (err error) {
256 defer client.Mutex.Unlock()
258 client.Content = append(client.Content, parameters)
259 if resourceType == "containers" {
260 if parameters["container"].(arvadosclient.Dict)["state"] == "Running" {
261 client.WasSetRunning = true
263 } else if resourceType == "collections" {
264 mt := parameters["collection"].(arvadosclient.Dict)["manifest_text"].(string)
265 output.(*arvados.Collection).UUID = uuid
266 output.(*arvados.Collection).PortableDataHash = fmt.Sprintf("%x", md5.Sum([]byte(mt)))
271 var discoveryMap = map[string]interface{}{
272 "defaultTrashLifetime": float64(1209600),
273 "crunchLimitLogBytesPerJob": float64(67108864),
274 "crunchLogThrottleBytes": float64(65536),
275 "crunchLogThrottlePeriod": float64(60),
276 "crunchLogThrottleLines": float64(1024),
277 "crunchLogPartialLineThrottlePeriod": float64(5),
278 "crunchLogBytesPerEvent": float64(4096),
279 "crunchLogSecondsBetweenEvents": float64(1),
282 func (client *ArvTestClient) Discovery(key string) (interface{}, error) {
283 return discoveryMap[key], nil
286 // CalledWith returns the parameters from the first API call whose
287 // parameters match jpath/string. E.g., CalledWith(c, "foo.bar",
288 // "baz") returns parameters with parameters["foo"]["bar"]=="baz". If
289 // no call matches, it returns nil.
290 func (client *ArvTestClient) CalledWith(jpath string, expect interface{}) arvadosclient.Dict {
292 for _, content := range client.Content {
293 var v interface{} = content
294 for _, k := range strings.Split(jpath, ".") {
295 if dict, ok := v.(arvadosclient.Dict); !ok {
308 func (client *KeepTestClient) LocalLocator(locator string) (string, error) {
312 func (client *KeepTestClient) BlockWrite(_ context.Context, opts arvados.BlockWriteOptions) (arvados.BlockWriteResponse, error) {
313 client.Content = opts.Data
314 return arvados.BlockWriteResponse{
315 Locator: fmt.Sprintf("%x+%d", md5.Sum(opts.Data), len(opts.Data)),
319 func (client *KeepTestClient) ReadAt(string, []byte, int) (int, error) {
320 return 0, errors.New("not implemented")
323 func (client *KeepTestClient) ClearBlockCache() {
326 func (client *KeepTestClient) Close() {
330 func (client *KeepTestClient) SetStorageClasses(sc []string) {
331 client.StorageClasses = sc
334 type FileWrapper struct {
339 func (fw FileWrapper) Readdir(n int) ([]os.FileInfo, error) {
340 return nil, errors.New("not implemented")
343 func (fw FileWrapper) Seek(int64, int) (int64, error) {
344 return 0, errors.New("not implemented")
347 func (fw FileWrapper) Size() int64 {
351 func (fw FileWrapper) Stat() (os.FileInfo, error) {
352 return nil, errors.New("not implemented")
355 func (fw FileWrapper) Truncate(int64) error {
356 return errors.New("not implemented")
359 func (fw FileWrapper) Write([]byte) (int, error) {
360 return 0, errors.New("not implemented")
363 func (fw FileWrapper) Sync() error {
364 return errors.New("not implemented")
367 func (client *KeepTestClient) ManifestFileReader(m manifest.Manifest, filename string) (arvados.File, error) {
368 if filename == hwImageID+".tar" {
369 rdr := ioutil.NopCloser(&bytes.Buffer{})
371 return FileWrapper{rdr, 1321984}, nil
372 } else if filename == "/file1_in_main.txt" {
373 rdr := ioutil.NopCloser(strings.NewReader("foo"))
375 return FileWrapper{rdr, 3}, nil
380 func (s *TestSuite) TestLoadImage(c *C) {
381 s.runner.Container.ContainerImage = arvadostest.DockerImage112PDH
382 s.runner.Container.Mounts = map[string]arvados.Mount{
383 "/out": {Kind: "tmp", Writable: true},
385 s.runner.Container.OutputPath = "/out"
387 _, err := s.runner.SetupMounts()
390 imageID, err := s.runner.LoadImage()
392 c.Check(s.executor.loaded, Matches, ".*"+regexp.QuoteMeta(arvadostest.DockerImage112Filename))
393 c.Check(imageID, Equals, strings.TrimSuffix(arvadostest.DockerImage112Filename, ".tar"))
395 s.runner.Container.ContainerImage = arvadostest.DockerImage112PDH
396 s.executor.imageLoaded = false
397 s.executor.loaded = ""
398 s.executor.loadErr = errors.New("bork")
399 imageID, err = s.runner.LoadImage()
400 c.Check(err, ErrorMatches, ".*bork")
401 c.Check(s.executor.loaded, Matches, ".*"+regexp.QuoteMeta(arvadostest.DockerImage112Filename))
403 s.runner.Container.ContainerImage = fakeInputCollectionPDH
404 s.executor.imageLoaded = false
405 s.executor.loaded = ""
406 s.executor.loadErr = nil
407 imageID, err = s.runner.LoadImage()
408 c.Check(err, ErrorMatches, "image collection does not include a \\.tar image file")
409 c.Check(s.executor.loaded, Equals, "")
412 type ArvErrorTestClient struct{}
414 func (ArvErrorTestClient) Create(resourceType string,
415 parameters arvadosclient.Dict,
416 output interface{}) error {
420 func (ArvErrorTestClient) Call(method, resourceType, uuid, action string, parameters arvadosclient.Dict, output interface{}) error {
421 if method == "GET" && resourceType == "containers" && action == "auth" {
424 return errors.New("ArvError")
427 func (ArvErrorTestClient) CallRaw(method, resourceType, uuid, action string,
428 parameters arvadosclient.Dict) (reader io.ReadCloser, err error) {
429 return nil, errors.New("ArvError")
432 func (ArvErrorTestClient) Get(resourceType string, uuid string, parameters arvadosclient.Dict, output interface{}) error {
433 return errors.New("ArvError")
436 func (ArvErrorTestClient) Update(resourceType string, uuid string, parameters arvadosclient.Dict, output interface{}) (err error) {
440 func (ArvErrorTestClient) Discovery(key string) (interface{}, error) {
441 return discoveryMap[key], nil
444 type KeepErrorTestClient struct {
448 func (*KeepErrorTestClient) ManifestFileReader(manifest.Manifest, string) (arvados.File, error) {
449 return nil, errors.New("KeepError")
452 func (*KeepErrorTestClient) BlockWrite(context.Context, arvados.BlockWriteOptions) (arvados.BlockWriteResponse, error) {
453 return arvados.BlockWriteResponse{}, errors.New("KeepError")
456 func (*KeepErrorTestClient) LocalLocator(string) (string, error) {
457 return "", errors.New("KeepError")
460 type KeepReadErrorTestClient struct {
464 func (*KeepReadErrorTestClient) ReadAt(string, []byte, int) (int, error) {
465 return 0, errors.New("KeepError")
468 type ErrorReader struct {
472 func (ErrorReader) Read(p []byte) (n int, err error) {
473 return 0, errors.New("ErrorReader")
476 func (ErrorReader) Seek(int64, int) (int64, error) {
477 return 0, errors.New("ErrorReader")
480 func (KeepReadErrorTestClient) ManifestFileReader(m manifest.Manifest, filename string) (arvados.File, error) {
481 return ErrorReader{}, nil
484 type ClosableBuffer struct {
488 func (*ClosableBuffer) Close() error {
492 type TestLogs struct {
493 Stdout ClosableBuffer
494 Stderr ClosableBuffer
497 func (tl *TestLogs) NewTestLoggingWriter(logstr string) (io.WriteCloser, error) {
498 if logstr == "stdout" {
499 return &tl.Stdout, nil
501 if logstr == "stderr" {
502 return &tl.Stderr, nil
504 return nil, errors.New("???")
507 func dockerLog(fd byte, msg string) []byte {
509 header := make([]byte, 8+len(by))
511 header[7] = byte(len(by))
516 func (s *TestSuite) TestRunContainer(c *C) {
517 s.executor.runFunc = func() {
518 fmt.Fprintf(s.executor.created.Stdout, "Hello world\n")
523 s.runner.NewLogWriter = logs.NewTestLoggingWriter
524 s.runner.Container.ContainerImage = arvadostest.DockerImage112PDH
525 s.runner.Container.Command = []string{"./hw"}
526 s.runner.Container.OutputStorageClasses = []string{"default"}
528 imageID, err := s.runner.LoadImage()
531 err = s.runner.CreateContainer(imageID, nil)
534 err = s.runner.StartContainer()
537 err = s.runner.WaitFinish()
540 c.Check(logs.Stdout.String(), Matches, ".*Hello world\n")
541 c.Check(logs.Stderr.String(), Equals, "")
544 func (s *TestSuite) TestCommitLogs(c *C) {
545 api := &ArvTestClient{}
546 kc := &KeepTestClient{}
548 cr, err := NewContainerRunner(s.client, api, kc, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
550 cr.CrunchLog.Timestamper = (&TestTimestamper{}).Timestamp
552 cr.CrunchLog.Print("Hello world!")
553 cr.CrunchLog.Print("Goodbye")
554 cr.finalState = "Complete"
556 err = cr.CommitLogs()
559 c.Check(api.Calls, Equals, 2)
560 c.Check(api.Content[1]["ensure_unique_name"], Equals, true)
561 c.Check(api.Content[1]["collection"].(arvadosclient.Dict)["name"], Equals, "logs for zzzzz-zzzzz-zzzzzzzzzzzzzzz")
562 c.Check(api.Content[1]["collection"].(arvadosclient.Dict)["manifest_text"], Equals, ". 744b2e4553123b02fa7b452ec5c18993+123 0:123:crunch-run.txt\n")
563 c.Check(*cr.LogsPDH, Equals, "63da7bdacf08c40f604daad80c261e9a+60")
566 func (s *TestSuite) TestUpdateContainerRunning(c *C) {
567 api := &ArvTestClient{}
568 kc := &KeepTestClient{}
570 cr, err := NewContainerRunner(s.client, api, kc, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
573 err = cr.UpdateContainerRunning()
576 c.Check(api.Content[0]["container"].(arvadosclient.Dict)["state"], Equals, "Running")
579 func (s *TestSuite) TestUpdateContainerComplete(c *C) {
580 api := &ArvTestClient{}
581 kc := &KeepTestClient{}
583 cr, err := NewContainerRunner(s.client, api, kc, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
586 cr.LogsPDH = new(string)
587 *cr.LogsPDH = "d3a229d2fe3690c2c3e75a71a153c6a3+60"
589 cr.ExitCode = new(int)
591 cr.finalState = "Complete"
593 err = cr.UpdateContainerFinal()
596 c.Check(api.Content[0]["container"].(arvadosclient.Dict)["log"], Equals, *cr.LogsPDH)
597 c.Check(api.Content[0]["container"].(arvadosclient.Dict)["exit_code"], Equals, *cr.ExitCode)
598 c.Check(api.Content[0]["container"].(arvadosclient.Dict)["state"], Equals, "Complete")
601 func (s *TestSuite) TestUpdateContainerCancelled(c *C) {
602 api := &ArvTestClient{}
603 kc := &KeepTestClient{}
605 cr, err := NewContainerRunner(s.client, api, kc, "zzzzz-zzzzz-zzzzzzzzzzzzzzz")
608 cr.finalState = "Cancelled"
610 err = cr.UpdateContainerFinal()
613 c.Check(api.Content[0]["container"].(arvadosclient.Dict)["log"], IsNil)
614 c.Check(api.Content[0]["container"].(arvadosclient.Dict)["exit_code"], IsNil)
615 c.Check(api.Content[0]["container"].(arvadosclient.Dict)["state"], Equals, "Cancelled")
618 // Used by the TestFullRun*() test below to DRY up boilerplate setup to do full
619 // dress rehearsal of the Run() function, starting from a JSON container record.
620 func (s *TestSuite) fullRunHelper(c *C, record string, extraMounts []string, exitCode int, fn func()) (*ArvTestClient, *ContainerRunner, string) {
621 err := json.Unmarshal([]byte(record), &s.api.Container)
623 initialState := s.api.Container.State
626 SecretMounts map[string]arvados.Mount `json:"secret_mounts"`
628 err = json.Unmarshal([]byte(record), &sm)
630 secretMounts, err := json.Marshal(sm)
632 c.Logf("SecretMounts decoded %v json %q", sm, secretMounts)
634 s.executor.runFunc = func() {
636 s.executor.exit <- exitCode
639 s.runner.statInterval = 100 * time.Millisecond
640 s.runner.containerWatchdogInterval = time.Second
641 am := &ArvMountCmdLine{}
642 s.runner.RunArvMount = am.ArvMountTest
644 realTemp := c.MkDir()
646 s.runner.MkTempDir = func(_, prefix string) (string, error) {
648 d := fmt.Sprintf("%s/%s%d", realTemp, prefix, tempcount)
649 err := os.Mkdir(d, os.ModePerm)
650 if err != nil && strings.Contains(err.Error(), ": file exists") {
651 // Test case must have pre-populated the tempdir
656 s.runner.MkArvClient = func(token string) (IArvadosClient, IKeepClient, *arvados.Client, error) {
657 return &ArvTestClient{secretMounts: secretMounts}, &s.testContainerKeepClient, nil, nil
660 if extraMounts != nil && len(extraMounts) > 0 {
661 err := s.runner.SetupArvMountPoint("keep")
664 for _, m := range extraMounts {
665 os.MkdirAll(s.runner.ArvMountPoint+"/by_id/"+m, os.ModePerm)
670 if s.api.CalledWith("container.state", "Complete") != nil {
673 if s.executor.loadErr == nil && s.executor.createErr == nil && initialState != "Running" {
674 c.Check(s.api.WasSetRunning, Equals, true)
675 var lastupdate arvadosclient.Dict
676 for _, content := range s.api.Content {
677 if content["container"] != nil {
678 lastupdate = content["container"].(arvadosclient.Dict)
681 if lastupdate["log"] == nil {
682 c.Errorf("no container update with non-nil log -- updates were: %v", s.api.Content)
687 for k, v := range s.api.Logs {
693 return s.api, s.runner, realTemp
696 func (s *TestSuite) TestFullRunHello(c *C) {
697 s.runner.enableMemoryLimit = true
698 s.runner.networkMode = "default"
699 s.fullRunHelper(c, `{
700 "command": ["echo", "hello world"],
701 "container_image": "`+arvadostest.DockerImage112PDH+`",
703 "environment": {"foo":"bar","baz":"waz"},
704 "mounts": {"/tmp": {"kind": "tmp"} },
705 "output_path": "/tmp",
707 "runtime_constraints": {"vcpus":1,"ram":1000000},
709 "output_storage_classes": ["default"]
711 c.Check(s.executor.created.Command, DeepEquals, []string{"echo", "hello world"})
712 c.Check(s.executor.created.Image, Equals, "sha256:d8309758b8fe2c81034ffc8a10c36460b77db7bc5e7b448c4e5b684f9d95a678")
713 c.Check(s.executor.created.Env, DeepEquals, map[string]string{"foo": "bar", "baz": "waz"})
714 c.Check(s.executor.created.VCPUs, Equals, 1)
715 c.Check(s.executor.created.RAM, Equals, int64(1000000))
716 c.Check(s.executor.created.NetworkMode, Equals, "default")
717 c.Check(s.executor.created.EnableNetwork, Equals, false)
718 c.Check(s.executor.created.CUDADeviceCount, Equals, 0)
719 fmt.Fprintln(s.executor.created.Stdout, "hello world")
722 c.Check(s.api.CalledWith("container.exit_code", 0), NotNil)
723 c.Check(s.api.CalledWith("container.state", "Complete"), NotNil)
724 c.Check(s.api.Logs["stdout"].String(), Matches, ".*hello world\n")
725 c.Check(s.testDispatcherKeepClient.StorageClasses, DeepEquals, []string{"default"})
726 c.Check(s.testContainerKeepClient.StorageClasses, DeepEquals, []string{"default"})
729 func (s *TestSuite) TestRunAlreadyRunning(c *C) {
731 s.fullRunHelper(c, `{
732 "command": ["sleep", "3"],
733 "container_image": "`+arvadostest.DockerImage112PDH+`",
736 "mounts": {"/tmp": {"kind": "tmp"} },
737 "output_path": "/tmp",
739 "runtime_constraints": {},
740 "scheduling_parameters":{"max_run_time": 1},
745 c.Check(s.api.CalledWith("container.state", "Cancelled"), IsNil)
746 c.Check(s.api.CalledWith("container.state", "Complete"), IsNil)
747 c.Check(ran, Equals, false)
750 func (s *TestSuite) TestRunTimeExceeded(c *C) {
751 s.fullRunHelper(c, `{
752 "command": ["sleep", "3"],
753 "container_image": "`+arvadostest.DockerImage112PDH+`",
756 "mounts": {"/tmp": {"kind": "tmp"} },
757 "output_path": "/tmp",
759 "runtime_constraints": {},
760 "scheduling_parameters":{"max_run_time": 1},
763 time.Sleep(3 * time.Second)
766 c.Check(s.api.CalledWith("container.state", "Cancelled"), NotNil)
767 c.Check(s.api.Logs["crunch-run"].String(), Matches, "(?ms).*maximum run time exceeded.*")
770 func (s *TestSuite) TestContainerWaitFails(c *C) {
771 s.fullRunHelper(c, `{
772 "command": ["sleep", "3"],
773 "container_image": "`+arvadostest.DockerImage112PDH+`",
775 "mounts": {"/tmp": {"kind": "tmp"} },
776 "output_path": "/tmp",
780 s.executor.waitErr = errors.New("Container is not running")
783 c.Check(s.api.CalledWith("container.state", "Cancelled"), NotNil)
784 c.Check(s.api.Logs["crunch-run"].String(), Matches, "(?ms).*Container is not running.*")
787 func (s *TestSuite) TestCrunchstat(c *C) {
788 s.fullRunHelper(c, `{
789 "command": ["sleep", "1"],
790 "container_image": "`+arvadostest.DockerImage112PDH+`",
793 "mounts": {"/tmp": {"kind": "tmp"} },
794 "output_path": "/tmp",
796 "runtime_constraints": {},
799 time.Sleep(time.Second)
802 c.Check(s.api.CalledWith("container.exit_code", 0), NotNil)
803 c.Check(s.api.CalledWith("container.state", "Complete"), NotNil)
805 // We didn't actually start a container, so crunchstat didn't
806 // find accounting files and therefore didn't log any stats.
807 // It should have logged a "can't find accounting files"
808 // message after one poll interval, though, so we can confirm
810 c.Assert(s.api.Logs["crunchstat"], NotNil)
811 c.Check(s.api.Logs["crunchstat"].String(), Matches, `(?ms).*cgroup stats files have not appeared after 100ms.*`)
813 // The "files never appeared" log assures us that we called
814 // (*crunchstat.Reporter)Stop(), and that we set it up with
815 // the correct container ID "abcde":
816 c.Check(s.api.Logs["crunchstat"].String(), Matches, `(?ms).*cgroup stats files never appeared for cgroupid\n`)
819 func (s *TestSuite) TestNodeInfoLog(c *C) {
820 os.Setenv("SLURMD_NODENAME", "compute2")
821 s.fullRunHelper(c, `{
822 "command": ["sleep", "1"],
823 "container_image": "`+arvadostest.DockerImage112PDH+`",
826 "mounts": {"/tmp": {"kind": "tmp"} },
827 "output_path": "/tmp",
829 "runtime_constraints": {},
833 time.Sleep(time.Second)
836 c.Check(s.api.CalledWith("container.exit_code", 0), NotNil)
837 c.Check(s.api.CalledWith("container.state", "Complete"), NotNil)
839 c.Assert(s.api.Logs["node"], NotNil)
840 json := s.api.Logs["node"].String()
841 c.Check(json, Matches, `(?ms).*"uuid": *"zzzzz-7ekkf-2z3mc76g2q73aio".*`)
842 c.Check(json, Matches, `(?ms).*"total_cpu_cores": *16.*`)
843 c.Check(json, Not(Matches), `(?ms).*"info":.*`)
845 c.Assert(s.api.Logs["node-info"], NotNil)
846 json = s.api.Logs["node-info"].String()
847 c.Check(json, Matches, `(?ms).*Host Information.*`)
848 c.Check(json, Matches, `(?ms).*CPU Information.*`)
849 c.Check(json, Matches, `(?ms).*Memory Information.*`)
850 c.Check(json, Matches, `(?ms).*Disk Space.*`)
851 c.Check(json, Matches, `(?ms).*Disk INodes.*`)
854 func (s *TestSuite) TestLogVersionAndRuntime(c *C) {
855 s.fullRunHelper(c, `{
856 "command": ["sleep", "1"],
857 "container_image": "`+arvadostest.DockerImage112PDH+`",
860 "mounts": {"/tmp": {"kind": "tmp"} },
861 "output_path": "/tmp",
863 "runtime_constraints": {},
869 c.Assert(s.api.Logs["crunch-run"], NotNil)
870 c.Check(s.api.Logs["crunch-run"].String(), Matches, `(?ms).*crunch-run \S+ \(go\S+\) start.*`)
871 c.Check(s.api.Logs["crunch-run"].String(), Matches, `(?ms).*Executing container 'zzzzz-zzzzz-zzzzzzzzzzzzzzz' using stub runtime.*`)
874 func (s *TestSuite) TestContainerRecordLog(c *C) {
875 s.fullRunHelper(c, `{
876 "command": ["sleep", "1"],
877 "container_image": "`+arvadostest.DockerImage112PDH+`",
880 "mounts": {"/tmp": {"kind": "tmp"} },
881 "output_path": "/tmp",
883 "runtime_constraints": {},
887 time.Sleep(time.Second)
890 c.Check(s.api.CalledWith("container.exit_code", 0), NotNil)
891 c.Check(s.api.CalledWith("container.state", "Complete"), NotNil)
893 c.Assert(s.api.Logs["container"], NotNil)
894 c.Check(s.api.Logs["container"].String(), Matches, `(?ms).*container_image.*`)
897 func (s *TestSuite) TestFullRunStderr(c *C) {
898 s.fullRunHelper(c, `{
899 "command": ["/bin/sh", "-c", "echo hello ; echo world 1>&2 ; exit 1"],
900 "container_image": "`+arvadostest.DockerImage112PDH+`",
903 "mounts": {"/tmp": {"kind": "tmp"} },
904 "output_path": "/tmp",
906 "runtime_constraints": {},
909 fmt.Fprintln(s.executor.created.Stdout, "hello")
910 fmt.Fprintln(s.executor.created.Stderr, "world")
913 final := s.api.CalledWith("container.state", "Complete")
914 c.Assert(final, NotNil)
915 c.Check(final["container"].(arvadosclient.Dict)["exit_code"], Equals, 1)
916 c.Check(final["container"].(arvadosclient.Dict)["log"], NotNil)
918 c.Check(s.api.Logs["stdout"].String(), Matches, ".*hello\n")
919 c.Check(s.api.Logs["stderr"].String(), Matches, ".*world\n")
922 func (s *TestSuite) TestFullRunDefaultCwd(c *C) {
923 s.fullRunHelper(c, `{
925 "container_image": "`+arvadostest.DockerImage112PDH+`",
928 "mounts": {"/tmp": {"kind": "tmp"} },
929 "output_path": "/tmp",
931 "runtime_constraints": {},
934 fmt.Fprintf(s.executor.created.Stdout, "workdir=%q", s.executor.created.WorkingDir)
937 c.Check(s.api.CalledWith("container.exit_code", 0), NotNil)
938 c.Check(s.api.CalledWith("container.state", "Complete"), NotNil)
939 c.Log(s.api.Logs["stdout"])
940 c.Check(s.api.Logs["stdout"].String(), Matches, `.*workdir=""\n`)
943 func (s *TestSuite) TestFullRunSetCwd(c *C) {
944 s.fullRunHelper(c, `{
946 "container_image": "`+arvadostest.DockerImage112PDH+`",
949 "mounts": {"/tmp": {"kind": "tmp"} },
950 "output_path": "/tmp",
952 "runtime_constraints": {},
955 fmt.Fprintln(s.executor.created.Stdout, s.executor.created.WorkingDir)
958 c.Check(s.api.CalledWith("container.exit_code", 0), NotNil)
959 c.Check(s.api.CalledWith("container.state", "Complete"), NotNil)
960 c.Check(s.api.Logs["stdout"].String(), Matches, ".*/bin\n")
963 func (s *TestSuite) TestFullRunSetOutputStorageClasses(c *C) {
964 s.fullRunHelper(c, `{
966 "container_image": "`+arvadostest.DockerImage112PDH+`",
969 "mounts": {"/tmp": {"kind": "tmp"} },
970 "output_path": "/tmp",
972 "runtime_constraints": {},
974 "output_storage_classes": ["foo", "bar"]
976 fmt.Fprintln(s.executor.created.Stdout, s.executor.created.WorkingDir)
979 c.Check(s.api.CalledWith("container.exit_code", 0), NotNil)
980 c.Check(s.api.CalledWith("container.state", "Complete"), NotNil)
981 c.Check(s.api.Logs["stdout"].String(), Matches, ".*/bin\n")
982 c.Check(s.testDispatcherKeepClient.StorageClasses, DeepEquals, []string{"foo", "bar"})
983 c.Check(s.testContainerKeepClient.StorageClasses, DeepEquals, []string{"foo", "bar"})
986 func (s *TestSuite) TestEnableCUDADeviceCount(c *C) {
987 s.fullRunHelper(c, `{
989 "container_image": "`+arvadostest.DockerImage112PDH+`",
992 "mounts": {"/tmp": {"kind": "tmp"} },
993 "output_path": "/tmp",
995 "runtime_constraints": {"cuda": {"device_count": 2}},
997 "output_storage_classes": ["foo", "bar"]
999 fmt.Fprintln(s.executor.created.Stdout, "ok")
1001 c.Check(s.executor.created.CUDADeviceCount, Equals, 2)
1004 func (s *TestSuite) TestEnableCUDAHardwareCapability(c *C) {
1005 s.fullRunHelper(c, `{
1007 "container_image": "`+arvadostest.DockerImage112PDH+`",
1010 "mounts": {"/tmp": {"kind": "tmp"} },
1011 "output_path": "/tmp",
1013 "runtime_constraints": {"cuda": {"hardware_capability": "foo"}},
1015 "output_storage_classes": ["foo", "bar"]
1016 }`, nil, 0, func() {
1017 fmt.Fprintln(s.executor.created.Stdout, "ok")
1019 c.Check(s.executor.created.CUDADeviceCount, Equals, 0)
1022 func (s *TestSuite) TestStopOnSignal(c *C) {
1023 s.executor.runFunc = func() {
1024 s.executor.created.Stdout.Write([]byte("foo\n"))
1025 s.runner.SigChan <- syscall.SIGINT
1027 s.testStopContainer(c)
1030 func (s *TestSuite) TestStopOnArvMountDeath(c *C) {
1031 s.executor.runFunc = func() {
1032 s.executor.created.Stdout.Write([]byte("foo\n"))
1033 s.runner.ArvMountExit <- nil
1034 close(s.runner.ArvMountExit)
1036 s.runner.ArvMountExit = make(chan error)
1037 s.testStopContainer(c)
1040 func (s *TestSuite) testStopContainer(c *C) {
1042 "command": ["/bin/sh", "-c", "echo foo && sleep 30 && echo bar"],
1043 "container_image": "` + arvadostest.DockerImage112PDH + `",
1046 "mounts": {"/tmp": {"kind": "tmp"} },
1047 "output_path": "/tmp",
1049 "runtime_constraints": {},
1053 err := json.Unmarshal([]byte(record), &s.api.Container)
1054 c.Assert(err, IsNil)
1056 s.runner.RunArvMount = func([]string, string) (*exec.Cmd, error) { return nil, nil }
1057 s.runner.MkArvClient = func(token string) (IArvadosClient, IKeepClient, *arvados.Client, error) {
1058 return &ArvTestClient{}, &KeepTestClient{}, nil, nil
1061 done := make(chan error)
1063 done <- s.runner.Run()
1066 case <-time.After(20 * time.Second):
1067 pprof.Lookup("goroutine").WriteTo(os.Stderr, 1)
1068 c.Fatal("timed out")
1072 for k, v := range s.api.Logs {
1074 c.Log(v.String(), "\n")
1077 c.Check(s.api.CalledWith("container.log", nil), NotNil)
1078 c.Check(s.api.CalledWith("container.state", "Cancelled"), NotNil)
1079 c.Check(s.api.Logs["stdout"].String(), Matches, "(?ms).*foo\n$")
1082 func (s *TestSuite) TestFullRunSetEnv(c *C) {
1083 s.fullRunHelper(c, `{
1084 "command": ["/bin/sh", "-c", "echo $FROBIZ"],
1085 "container_image": "`+arvadostest.DockerImage112PDH+`",
1087 "environment": {"FROBIZ": "bilbo"},
1088 "mounts": {"/tmp": {"kind": "tmp"} },
1089 "output_path": "/tmp",
1091 "runtime_constraints": {},
1093 }`, nil, 0, func() {
1094 fmt.Fprintf(s.executor.created.Stdout, "%v", s.executor.created.Env)
1097 c.Check(s.api.CalledWith("container.exit_code", 0), NotNil)
1098 c.Check(s.api.CalledWith("container.state", "Complete"), NotNil)
1099 c.Check(s.api.Logs["stdout"].String(), Matches, `.*map\[FROBIZ:bilbo\]\n`)
1102 type ArvMountCmdLine struct {
1107 func (am *ArvMountCmdLine) ArvMountTest(c []string, token string) (*exec.Cmd, error) {
1113 func stubCert(temp string) string {
1114 path := temp + "/ca-certificates.crt"
1115 crt, _ := os.Create(path)
1117 arvadosclient.CertFiles = []string{path}
1121 func (s *TestSuite) TestSetupMounts(c *C) {
1123 am := &ArvMountCmdLine{}
1124 cr.RunArvMount = am.ArvMountTest
1125 cr.ContainerArvClient = &ArvTestClient{}
1126 cr.ContainerKeepClient = &KeepTestClient{}
1127 cr.Container.OutputStorageClasses = []string{"default"}
1129 realTemp := c.MkDir()
1130 certTemp := c.MkDir()
1131 stubCertPath := stubCert(certTemp)
1132 cr.parentTemp = realTemp
1135 cr.MkTempDir = func(_ string, prefix string) (string, error) {
1137 d := fmt.Sprintf("%s/%s%d", realTemp, prefix, i)
1138 err := os.Mkdir(d, os.ModePerm)
1139 if err != nil && strings.Contains(err.Error(), ": file exists") {
1140 // Test case must have pre-populated the tempdir
1146 checkEmpty := func() {
1147 // Should be deleted.
1148 _, err := os.Stat(realTemp)
1149 c.Assert(os.IsNotExist(err), Equals, true)
1151 // Now recreate it for the next test.
1152 c.Assert(os.Mkdir(realTemp, 0777), IsNil)
1157 cr.ArvMountPoint = ""
1158 cr.Container.Mounts = make(map[string]arvados.Mount)
1159 cr.Container.Mounts["/tmp"] = arvados.Mount{Kind: "tmp"}
1160 cr.Container.OutputPath = "/tmp"
1161 cr.statInterval = 5 * time.Second
1162 bindmounts, err := cr.SetupMounts()
1164 c.Check(am.Cmd, DeepEquals, []string{"arv-mount", "--foreground",
1165 "--read-write", "--storage-classes", "default", "--crunchstat-interval=5",
1166 "--mount-by-pdh", "by_id", "--disable-event-listening", "--mount-by-id", "by_uuid", realTemp + "/keep1"})
1167 c.Check(bindmounts, DeepEquals, map[string]bindmount{"/tmp": {realTemp + "/tmp2", false}})
1168 os.RemoveAll(cr.ArvMountPoint)
1175 cr.ArvMountPoint = ""
1176 cr.Container.Mounts = make(map[string]arvados.Mount)
1177 cr.Container.Mounts["/out"] = arvados.Mount{Kind: "tmp"}
1178 cr.Container.Mounts["/tmp"] = arvados.Mount{Kind: "tmp"}
1179 cr.Container.OutputPath = "/out"
1180 cr.Container.OutputStorageClasses = []string{"foo", "bar"}
1182 bindmounts, err := cr.SetupMounts()
1184 c.Check(am.Cmd, DeepEquals, []string{"arv-mount", "--foreground",
1185 "--read-write", "--storage-classes", "foo,bar", "--crunchstat-interval=5",
1186 "--mount-by-pdh", "by_id", "--disable-event-listening", "--mount-by-id", "by_uuid", realTemp + "/keep1"})
1187 c.Check(bindmounts, DeepEquals, map[string]bindmount{"/out": {realTemp + "/tmp2", false}, "/tmp": {realTemp + "/tmp3", false}})
1188 os.RemoveAll(cr.ArvMountPoint)
1195 cr.ArvMountPoint = ""
1196 cr.Container.Mounts = make(map[string]arvados.Mount)
1197 cr.Container.Mounts["/tmp"] = arvados.Mount{Kind: "tmp"}
1198 cr.Container.OutputPath = "/tmp"
1199 cr.Container.RuntimeConstraints.API = true
1200 cr.Container.OutputStorageClasses = []string{"default"}
1202 bindmounts, err := cr.SetupMounts()
1204 c.Check(am.Cmd, DeepEquals, []string{"arv-mount", "--foreground",
1205 "--read-write", "--storage-classes", "default", "--crunchstat-interval=5",
1206 "--mount-by-pdh", "by_id", "--disable-event-listening", "--mount-by-id", "by_uuid", realTemp + "/keep1"})
1207 c.Check(bindmounts, DeepEquals, map[string]bindmount{"/tmp": {realTemp + "/tmp2", false}, "/etc/arvados/ca-certificates.crt": {stubCertPath, true}})
1208 os.RemoveAll(cr.ArvMountPoint)
1212 cr.Container.RuntimeConstraints.API = false
1217 cr.ArvMountPoint = ""
1218 cr.Container.Mounts = map[string]arvados.Mount{
1219 "/keeptmp": {Kind: "collection", Writable: true},
1221 cr.Container.OutputPath = "/keeptmp"
1223 os.MkdirAll(realTemp+"/keep1/tmp0", os.ModePerm)
1225 bindmounts, err := cr.SetupMounts()
1227 c.Check(am.Cmd, DeepEquals, []string{"arv-mount", "--foreground",
1228 "--read-write", "--storage-classes", "default", "--crunchstat-interval=5",
1229 "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", "--disable-event-listening", "--mount-by-id", "by_uuid", realTemp + "/keep1"})
1230 c.Check(bindmounts, DeepEquals, map[string]bindmount{"/keeptmp": {realTemp + "/keep1/tmp0", false}})
1231 os.RemoveAll(cr.ArvMountPoint)
1238 cr.ArvMountPoint = ""
1239 cr.Container.Mounts = map[string]arvados.Mount{
1240 "/keepinp": {Kind: "collection", PortableDataHash: "59389a8f9ee9d399be35462a0f92541c+53"},
1241 "/keepout": {Kind: "collection", Writable: true},
1243 cr.Container.OutputPath = "/keepout"
1245 os.MkdirAll(realTemp+"/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53", os.ModePerm)
1246 os.MkdirAll(realTemp+"/keep1/tmp0", os.ModePerm)
1248 bindmounts, err := cr.SetupMounts()
1250 c.Check(am.Cmd, DeepEquals, []string{"arv-mount", "--foreground",
1251 "--read-write", "--storage-classes", "default", "--crunchstat-interval=5",
1252 "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", "--disable-event-listening", "--mount-by-id", "by_uuid", realTemp + "/keep1"})
1253 c.Check(bindmounts, DeepEquals, map[string]bindmount{
1254 "/keepinp": {realTemp + "/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53", true},
1255 "/keepout": {realTemp + "/keep1/tmp0", false},
1257 os.RemoveAll(cr.ArvMountPoint)
1264 cr.ArvMountPoint = ""
1265 cr.Container.RuntimeConstraints.KeepCacheRAM = 512
1266 cr.Container.Mounts = map[string]arvados.Mount{
1267 "/keepinp": {Kind: "collection", PortableDataHash: "59389a8f9ee9d399be35462a0f92541c+53"},
1268 "/keepout": {Kind: "collection", Writable: true},
1270 cr.Container.OutputPath = "/keepout"
1272 os.MkdirAll(realTemp+"/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53", os.ModePerm)
1273 os.MkdirAll(realTemp+"/keep1/tmp0", os.ModePerm)
1275 bindmounts, err := cr.SetupMounts()
1277 c.Check(am.Cmd, DeepEquals, []string{"arv-mount", "--foreground",
1278 "--read-write", "--storage-classes", "default", "--crunchstat-interval=5",
1279 "--file-cache", "512", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", "--disable-event-listening", "--mount-by-id", "by_uuid", realTemp + "/keep1"})
1280 c.Check(bindmounts, DeepEquals, map[string]bindmount{
1281 "/keepinp": {realTemp + "/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53", true},
1282 "/keepout": {realTemp + "/keep1/tmp0", false},
1284 os.RemoveAll(cr.ArvMountPoint)
1289 for _, test := range []struct {
1293 {in: "foo", out: `"foo"`},
1294 {in: nil, out: `null`},
1295 {in: map[string]int64{"foo": 123456789123456789}, out: `{"foo":123456789123456789}`},
1298 cr.ArvMountPoint = ""
1299 cr.Container.Mounts = map[string]arvados.Mount{
1300 "/mnt/test.json": {Kind: "json", Content: test.in},
1302 bindmounts, err := cr.SetupMounts()
1304 c.Check(bindmounts, DeepEquals, map[string]bindmount{
1305 "/mnt/test.json": {realTemp + "/json2/mountdata.json", true},
1307 content, err := ioutil.ReadFile(realTemp + "/json2/mountdata.json")
1309 c.Check(content, DeepEquals, []byte(test.out))
1310 os.RemoveAll(cr.ArvMountPoint)
1315 for _, test := range []struct {
1319 {in: "foo", out: `foo`},
1320 {in: nil, out: "error"},
1321 {in: map[string]int64{"foo": 123456789123456789}, out: "error"},
1324 cr.ArvMountPoint = ""
1325 cr.Container.Mounts = map[string]arvados.Mount{
1326 "/mnt/test.txt": {Kind: "text", Content: test.in},
1328 bindmounts, err := cr.SetupMounts()
1329 if test.out == "error" {
1330 c.Check(err.Error(), Equals, "content for mount \"/mnt/test.txt\" must be a string")
1333 c.Check(bindmounts, DeepEquals, map[string]bindmount{
1334 "/mnt/test.txt": {realTemp + "/text2/mountdata.text", true},
1336 content, err := ioutil.ReadFile(realTemp + "/text2/mountdata.text")
1338 c.Check(content, DeepEquals, []byte(test.out))
1340 os.RemoveAll(cr.ArvMountPoint)
1345 // Read-only mount points are allowed underneath output_dir mount point
1348 cr.ArvMountPoint = ""
1349 cr.Container.Mounts = make(map[string]arvados.Mount)
1350 cr.Container.Mounts = map[string]arvados.Mount{
1351 "/tmp": {Kind: "tmp"},
1352 "/tmp/foo": {Kind: "collection"},
1354 cr.Container.OutputPath = "/tmp"
1356 os.MkdirAll(realTemp+"/keep1/tmp0", os.ModePerm)
1358 bindmounts, err := cr.SetupMounts()
1360 c.Check(am.Cmd, DeepEquals, []string{"arv-mount", "--foreground",
1361 "--read-write", "--storage-classes", "default", "--crunchstat-interval=5",
1362 "--file-cache", "512", "--mount-tmp", "tmp0", "--mount-by-pdh", "by_id", "--disable-event-listening", "--mount-by-id", "by_uuid", realTemp + "/keep1"})
1363 c.Check(bindmounts, DeepEquals, map[string]bindmount{
1364 "/tmp": {realTemp + "/tmp2", false},
1365 "/tmp/foo": {realTemp + "/keep1/tmp0", true},
1367 os.RemoveAll(cr.ArvMountPoint)
1372 // Writable mount points copied to output_dir mount point
1375 cr.ArvMountPoint = ""
1376 cr.Container.Mounts = make(map[string]arvados.Mount)
1377 cr.Container.Mounts = map[string]arvados.Mount{
1378 "/tmp": {Kind: "tmp"},
1379 "/tmp/foo": {Kind: "collection",
1380 PortableDataHash: "59389a8f9ee9d399be35462a0f92541c+53",
1382 "/tmp/bar": {Kind: "collection",
1383 PortableDataHash: "59389a8f9ee9d399be35462a0f92541d+53",
1387 cr.Container.OutputPath = "/tmp"
1389 os.MkdirAll(realTemp+"/keep1/by_id/59389a8f9ee9d399be35462a0f92541c+53", os.ModePerm)
1390 os.MkdirAll(realTemp+"/keep1/by_id/59389a8f9ee9d399be35462a0f92541d+53/baz", os.ModePerm)
1392 rf, _ := os.Create(realTemp + "/keep1/by_id/59389a8f9ee9d399be35462a0f92541d+53/baz/quux")
1393 rf.Write([]byte("bar"))
1396 _, err := cr.SetupMounts()
1398 _, err = os.Stat(cr.HostOutputDir + "/foo")
1400 _, err = os.Stat(cr.HostOutputDir + "/bar/quux")
1402 os.RemoveAll(cr.ArvMountPoint)
1407 // Only mount points of kind 'collection' are allowed underneath output_dir mount point
1410 cr.ArvMountPoint = ""
1411 cr.Container.Mounts = make(map[string]arvados.Mount)
1412 cr.Container.Mounts = map[string]arvados.Mount{
1413 "/tmp": {Kind: "tmp"},
1414 "/tmp/foo": {Kind: "tmp"},
1416 cr.Container.OutputPath = "/tmp"
1418 _, err := cr.SetupMounts()
1419 c.Check(err, NotNil)
1420 c.Check(err, ErrorMatches, `only mount points of kind 'collection', 'text' or 'json' are supported underneath the output_path.*`)
1421 os.RemoveAll(cr.ArvMountPoint)
1426 // Only mount point of kind 'collection' is allowed for stdin
1429 cr.ArvMountPoint = ""
1430 cr.Container.Mounts = make(map[string]arvados.Mount)
1431 cr.Container.Mounts = map[string]arvados.Mount{
1432 "stdin": {Kind: "tmp"},
1435 _, err := cr.SetupMounts()
1436 c.Check(err, NotNil)
1437 c.Check(err, ErrorMatches, `unsupported mount kind 'tmp' for stdin.*`)
1438 os.RemoveAll(cr.ArvMountPoint)
1446 cr.ArvMountPoint = ""
1447 (*GitMountSuite)(nil).useTestGitServer(c)
1448 cr.token = arvadostest.ActiveToken
1449 cr.Container.Mounts = make(map[string]arvados.Mount)
1450 cr.Container.Mounts = map[string]arvados.Mount{
1453 UUID: arvadostest.Repository2UUID,
1454 Commit: "fd3531f42995344f36c30b79f55f27b502f3d344",
1459 UUID: arvadostest.Repository2UUID,
1460 Commit: "5ebfab0522851df01fec11ec55a6d0f4877b542e",
1464 cr.Container.OutputPath = "/tmp"
1466 bindmounts, err := cr.SetupMounts()
1469 for path, mount := range bindmounts {
1470 c.Check(mount.ReadOnly, Equals, !cr.Container.Mounts[path].Writable, Commentf("%s %#v", path, mount))
1473 data, err := ioutil.ReadFile(bindmounts["/tip"].HostPath + "/dir1/dir2/file with mode 0644")
1475 c.Check(string(data), Equals, "\000\001\002\003")
1476 _, err = ioutil.ReadFile(bindmounts["/tip"].HostPath + "/file only on testbranch")
1477 c.Check(err, FitsTypeOf, &os.PathError{})
1478 c.Check(os.IsNotExist(err), Equals, true)
1480 data, err = ioutil.ReadFile(bindmounts["/non-tip"].HostPath + "/dir1/dir2/file with mode 0644")
1482 c.Check(string(data), Equals, "\000\001\002\003")
1483 data, err = ioutil.ReadFile(bindmounts["/non-tip"].HostPath + "/file only on testbranch")
1485 c.Check(string(data), Equals, "testfile\n")
1492 func (s *TestSuite) TestStdout(c *C) {
1494 "command": ["/bin/sh", "-c", "echo $FROBIZ"],
1495 "container_image": "` + arvadostest.DockerImage112PDH + `",
1497 "environment": {"FROBIZ": "bilbo"},
1498 "mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"} },
1499 "output_path": "/tmp",
1501 "runtime_constraints": {},
1505 s.fullRunHelper(c, helperRecord, nil, 0, func() {
1506 fmt.Fprintln(s.executor.created.Stdout, s.executor.created.Env["FROBIZ"])
1509 c.Check(s.api.CalledWith("container.exit_code", 0), NotNil)
1510 c.Check(s.api.CalledWith("container.state", "Complete"), NotNil)
1511 c.Check(s.runner.ContainerArvClient.(*ArvTestClient).CalledWith("collection.manifest_text", "./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out\n"), NotNil)
1514 // Used by the TestStdoutWithWrongPath*()
1515 func (s *TestSuite) stdoutErrorRunHelper(c *C, record string, fn func()) (*ArvTestClient, *ContainerRunner, error) {
1516 err := json.Unmarshal([]byte(record), &s.api.Container)
1517 c.Assert(err, IsNil)
1518 s.executor.runFunc = fn
1519 s.runner.RunArvMount = (&ArvMountCmdLine{}).ArvMountTest
1520 s.runner.MkArvClient = func(token string) (IArvadosClient, IKeepClient, *arvados.Client, error) {
1521 return s.api, &KeepTestClient{}, nil, nil
1523 return s.api, s.runner, s.runner.Run()
1526 func (s *TestSuite) TestStdoutWithWrongPath(c *C) {
1527 _, _, err := s.stdoutErrorRunHelper(c, `{
1528 "mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "file", "path":"/tmpa.out"} },
1529 "output_path": "/tmp",
1532 c.Check(err, ErrorMatches, ".*Stdout path does not start with OutputPath.*")
1535 func (s *TestSuite) TestStdoutWithWrongKindTmp(c *C) {
1536 _, _, err := s.stdoutErrorRunHelper(c, `{
1537 "mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "tmp", "path":"/tmp/a.out"} },
1538 "output_path": "/tmp",
1541 c.Check(err, ErrorMatches, ".*unsupported mount kind 'tmp' for stdout.*")
1544 func (s *TestSuite) TestStdoutWithWrongKindCollection(c *C) {
1545 _, _, err := s.stdoutErrorRunHelper(c, `{
1546 "mounts": {"/tmp": {"kind": "tmp"}, "stdout": {"kind": "collection", "path":"/tmp/a.out"} },
1547 "output_path": "/tmp",
1550 c.Check(err, ErrorMatches, ".*unsupported mount kind 'collection' for stdout.*")
1553 func (s *TestSuite) TestFullRunWithAPI(c *C) {
1554 s.fullRunHelper(c, `{
1555 "command": ["/bin/sh", "-c", "true $ARVADOS_API_HOST"],
1556 "container_image": "`+arvadostest.DockerImage112PDH+`",
1559 "mounts": {"/tmp": {"kind": "tmp"} },
1560 "output_path": "/tmp",
1562 "runtime_constraints": {"API": true},
1564 }`, nil, 0, func() {
1565 c.Check(s.executor.created.Env["ARVADOS_API_HOST"], Equals, os.Getenv("ARVADOS_API_HOST"))
1566 s.executor.exit <- 3
1568 c.Check(s.api.CalledWith("container.exit_code", 3), NotNil)
1569 c.Check(s.api.CalledWith("container.state", "Complete"), NotNil)
1570 c.Check(s.api.Logs["crunch-run"].String(), Matches, `(?ms).*status code 3\n.*`)
1573 func (s *TestSuite) TestFullRunSetOutput(c *C) {
1574 defer os.Setenv("ARVADOS_API_HOST", os.Getenv("ARVADOS_API_HOST"))
1575 os.Setenv("ARVADOS_API_HOST", "test.arvados.org")
1576 s.fullRunHelper(c, `{
1577 "command": ["/bin/sh", "-c", "echo $ARVADOS_API_HOST"],
1578 "container_image": "`+arvadostest.DockerImage112PDH+`",
1581 "mounts": {"/tmp": {"kind": "tmp"} },
1582 "output_path": "/tmp",
1584 "runtime_constraints": {"API": true},
1586 }`, nil, 0, func() {
1587 s.api.Container.Output = arvadostest.DockerImage112PDH
1590 c.Check(s.api.CalledWith("container.exit_code", 0), NotNil)
1591 c.Check(s.api.CalledWith("container.state", "Complete"), NotNil)
1592 c.Check(s.api.CalledWith("container.output", arvadostest.DockerImage112PDH), NotNil)
1595 func (s *TestSuite) TestArvMountRuntimeStatusWarning(c *C) {
1596 s.runner.RunArvMount = func([]string, string) (*exec.Cmd, error) {
1597 os.Mkdir(s.runner.ArvMountPoint+"/by_id", 0666)
1598 ioutil.WriteFile(s.runner.ArvMountPoint+"/by_id/README", nil, 0666)
1599 return s.runner.ArvMountCmd([]string{"bash", "-c", "echo >&2 Test: Keep write error: I am a teapot; sleep 3"}, "")
1601 s.executor.runFunc = func() {
1602 time.Sleep(time.Second)
1603 s.executor.exit <- 137
1606 "command": ["sleep", "1"],
1607 "container_image": "` + arvadostest.DockerImage112PDH + `",
1610 "mounts": {"/tmp": {"kind": "tmp"} },
1611 "output_path": "/tmp",
1613 "runtime_constraints": {"API": true},
1616 err := json.Unmarshal([]byte(record), &s.api.Container)
1617 c.Assert(err, IsNil)
1618 err = s.runner.Run()
1619 c.Assert(err, IsNil)
1620 c.Check(s.api.CalledWith("container.exit_code", 137), NotNil)
1621 c.Check(s.api.CalledWith("container.runtime_status.warning", "arv-mount: Keep write error"), NotNil)
1622 c.Check(s.api.CalledWith("container.runtime_status.warningDetail", "Test: Keep write error: I am a teapot"), NotNil)
1623 c.Check(s.api.CalledWith("container.state", "Complete"), NotNil)
1624 c.Check(s.api.Logs["crunch-run"].String(), Matches, `(?ms).*Container exited with status code 137 \(signal 9, SIGKILL\).*`)
1627 func (s *TestSuite) TestStdoutWithExcludeFromOutputMountPointUnderOutputDir(c *C) {
1629 "command": ["/bin/sh", "-c", "echo $FROBIZ"],
1630 "container_image": "` + arvadostest.DockerImage112PDH + `",
1632 "environment": {"FROBIZ": "bilbo"},
1634 "/tmp": {"kind": "tmp"},
1635 "/tmp/foo": {"kind": "collection",
1636 "portable_data_hash": "a3e8f74c6f101eae01fa08bfb4e49b3a+54",
1637 "exclude_from_output": true
1639 "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"}
1641 "output_path": "/tmp",
1643 "runtime_constraints": {},
1647 extraMounts := []string{"a3e8f74c6f101eae01fa08bfb4e49b3a+54"}
1649 s.fullRunHelper(c, helperRecord, extraMounts, 0, func() {
1650 fmt.Fprintln(s.executor.created.Stdout, s.executor.created.Env["FROBIZ"])
1653 c.Check(s.api.CalledWith("container.exit_code", 0), NotNil)
1654 c.Check(s.api.CalledWith("container.state", "Complete"), NotNil)
1655 c.Check(s.runner.ContainerArvClient.(*ArvTestClient).CalledWith("collection.manifest_text", "./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out\n"), NotNil)
1658 func (s *TestSuite) TestStdoutWithMultipleMountPointsUnderOutputDir(c *C) {
1660 "command": ["/bin/sh", "-c", "echo $FROBIZ"],
1661 "container_image": "` + arvadostest.DockerImage112PDH + `",
1663 "environment": {"FROBIZ": "bilbo"},
1665 "/tmp": {"kind": "tmp"},
1666 "/tmp/foo/bar": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path":"/file2_in_main.txt"},
1667 "/tmp/foo/sub1": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path":"/subdir1"},
1668 "/tmp/foo/sub1file2": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path":"/subdir1/file2_in_subdir1.txt"},
1669 "/tmp/foo/baz/sub2file2": {"kind": "collection", "portable_data_hash": "a0def87f80dd594d4675809e83bd4f15+367", "path":"/subdir1/subdir2/file2_in_subdir2.txt"},
1670 "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"}
1672 "output_path": "/tmp",
1674 "runtime_constraints": {},
1678 extraMounts := []string{
1679 "a0def87f80dd594d4675809e83bd4f15+367/file2_in_main.txt",
1680 "a0def87f80dd594d4675809e83bd4f15+367/subdir1/file2_in_subdir1.txt",
1681 "a0def87f80dd594d4675809e83bd4f15+367/subdir1/subdir2/file2_in_subdir2.txt",
1684 api, _, realtemp := s.fullRunHelper(c, helperRecord, extraMounts, 0, func() {
1685 fmt.Fprintln(s.executor.created.Stdout, s.executor.created.Env["FROBIZ"])
1688 c.Check(s.executor.created.BindMounts, DeepEquals, map[string]bindmount{
1689 "/tmp": {realtemp + "/tmp1", false},
1690 "/tmp/foo/bar": {s.keepmount + "/by_id/a0def87f80dd594d4675809e83bd4f15+367/file2_in_main.txt", true},
1691 "/tmp/foo/baz/sub2file2": {s.keepmount + "/by_id/a0def87f80dd594d4675809e83bd4f15+367/subdir1/subdir2/file2_in_subdir2.txt", true},
1692 "/tmp/foo/sub1": {s.keepmount + "/by_id/a0def87f80dd594d4675809e83bd4f15+367/subdir1", true},
1693 "/tmp/foo/sub1file2": {s.keepmount + "/by_id/a0def87f80dd594d4675809e83bd4f15+367/subdir1/file2_in_subdir1.txt", true},
1696 c.Check(api.CalledWith("container.exit_code", 0), NotNil)
1697 c.Check(api.CalledWith("container.state", "Complete"), NotNil)
1698 for _, v := range api.Content {
1699 if v["collection"] != nil {
1700 c.Check(v["ensure_unique_name"], Equals, true)
1701 collection := v["collection"].(arvadosclient.Dict)
1702 if strings.Index(collection["name"].(string), "output") == 0 {
1703 manifest := collection["manifest_text"].(string)
1705 c.Check(manifest, Equals, `./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out
1706 ./foo 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 9:18:bar 36:18:sub1file2
1707 ./foo/baz 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 9:18:sub2file2
1708 ./foo/sub1 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396cabcdefghij6419876543234@569fa8c4 0:9:file1_in_subdir1.txt 9:18:file2_in_subdir1.txt
1709 ./foo/sub1/subdir2 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0bcdefghijk544332211@569fa8c5 0:9:file1_in_subdir2.txt 9:18:file2_in_subdir2.txt
1716 func (s *TestSuite) TestStdoutWithMountPointsUnderOutputDirDenormalizedManifest(c *C) {
1718 "command": ["/bin/sh", "-c", "echo $FROBIZ"],
1719 "container_image": "` + arvadostest.DockerImage112PDH + `",
1721 "environment": {"FROBIZ": "bilbo"},
1723 "/tmp": {"kind": "tmp"},
1724 "/tmp/foo/bar": {"kind": "collection", "portable_data_hash": "b0def87f80dd594d4675809e83bd4f15+367", "path": "/subdir1/file2_in_subdir1.txt"},
1725 "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"}
1727 "output_path": "/tmp",
1729 "runtime_constraints": {},
1733 extraMounts := []string{
1734 "b0def87f80dd594d4675809e83bd4f15+367/subdir1/file2_in_subdir1.txt",
1737 s.fullRunHelper(c, helperRecord, extraMounts, 0, func() {
1738 fmt.Fprintln(s.executor.created.Stdout, s.executor.created.Env["FROBIZ"])
1741 c.Check(s.api.CalledWith("container.exit_code", 0), NotNil)
1742 c.Check(s.api.CalledWith("container.state", "Complete"), NotNil)
1743 for _, v := range s.api.Content {
1744 if v["collection"] != nil {
1745 collection := v["collection"].(arvadosclient.Dict)
1746 if strings.Index(collection["name"].(string), "output") == 0 {
1747 manifest := collection["manifest_text"].(string)
1749 c.Check(manifest, Equals, `./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out
1750 ./foo 3e426d509afffb85e06c4c96a7c15e91+27+Aa124ac75e5168396c73c0abcdefgh11234567890@569fa8c3 10:17:bar
1757 func (s *TestSuite) TestOutputError(c *C) {
1759 "command": ["/bin/sh", "-c", "echo $FROBIZ"],
1760 "container_image": "` + arvadostest.DockerImage112PDH + `",
1762 "environment": {"FROBIZ": "bilbo"},
1764 "/tmp": {"kind": "tmp"}
1766 "output_path": "/tmp",
1768 "runtime_constraints": {},
1771 s.fullRunHelper(c, helperRecord, nil, 0, func() {
1772 os.Symlink("/etc/hosts", s.runner.HostOutputDir+"/baz")
1775 c.Check(s.api.CalledWith("container.state", "Cancelled"), NotNil)
1778 func (s *TestSuite) TestStdinCollectionMountPoint(c *C) {
1780 "command": ["/bin/sh", "-c", "echo $FROBIZ"],
1781 "container_image": "` + arvadostest.DockerImage112PDH + `",
1783 "environment": {"FROBIZ": "bilbo"},
1785 "/tmp": {"kind": "tmp"},
1786 "stdin": {"kind": "collection", "portable_data_hash": "b0def87f80dd594d4675809e83bd4f15+367", "path": "/file1_in_main.txt"},
1787 "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"}
1789 "output_path": "/tmp",
1791 "runtime_constraints": {},
1795 extraMounts := []string{
1796 "b0def87f80dd594d4675809e83bd4f15+367/file1_in_main.txt",
1799 api, _, _ := s.fullRunHelper(c, helperRecord, extraMounts, 0, func() {
1800 fmt.Fprintln(s.executor.created.Stdout, s.executor.created.Env["FROBIZ"])
1803 c.Check(api.CalledWith("container.exit_code", 0), NotNil)
1804 c.Check(api.CalledWith("container.state", "Complete"), NotNil)
1805 for _, v := range api.Content {
1806 if v["collection"] != nil {
1807 collection := v["collection"].(arvadosclient.Dict)
1808 if strings.Index(collection["name"].(string), "output") == 0 {
1809 manifest := collection["manifest_text"].(string)
1810 c.Check(manifest, Equals, `./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out
1817 func (s *TestSuite) TestStdinJsonMountPoint(c *C) {
1819 "command": ["/bin/sh", "-c", "echo $FROBIZ"],
1820 "container_image": "` + arvadostest.DockerImage112PDH + `",
1822 "environment": {"FROBIZ": "bilbo"},
1824 "/tmp": {"kind": "tmp"},
1825 "stdin": {"kind": "json", "content": "foo"},
1826 "stdout": {"kind": "file", "path": "/tmp/a/b/c.out"}
1828 "output_path": "/tmp",
1830 "runtime_constraints": {},
1834 api, _, _ := s.fullRunHelper(c, helperRecord, nil, 0, func() {
1835 fmt.Fprintln(s.executor.created.Stdout, s.executor.created.Env["FROBIZ"])
1838 c.Check(api.CalledWith("container.exit_code", 0), NotNil)
1839 c.Check(api.CalledWith("container.state", "Complete"), NotNil)
1840 for _, v := range api.Content {
1841 if v["collection"] != nil {
1842 collection := v["collection"].(arvadosclient.Dict)
1843 if strings.Index(collection["name"].(string), "output") == 0 {
1844 manifest := collection["manifest_text"].(string)
1845 c.Check(manifest, Equals, `./a/b 307372fa8fd5c146b22ae7a45b49bc31+6 0:6:c.out
1852 func (s *TestSuite) TestStderrMount(c *C) {
1853 api, cr, _ := s.fullRunHelper(c, `{
1854 "command": ["/bin/sh", "-c", "echo hello;exit 1"],
1855 "container_image": "`+arvadostest.DockerImage112PDH+`",
1858 "mounts": {"/tmp": {"kind": "tmp"},
1859 "stdout": {"kind": "file", "path": "/tmp/a/out.txt"},
1860 "stderr": {"kind": "file", "path": "/tmp/b/err.txt"}},
1861 "output_path": "/tmp",
1863 "runtime_constraints": {},
1865 }`, nil, 1, func() {
1866 fmt.Fprintln(s.executor.created.Stdout, "hello")
1867 fmt.Fprintln(s.executor.created.Stderr, "oops")
1870 final := api.CalledWith("container.state", "Complete")
1871 c.Assert(final, NotNil)
1872 c.Check(final["container"].(arvadosclient.Dict)["exit_code"], Equals, 1)
1873 c.Check(final["container"].(arvadosclient.Dict)["log"], NotNil)
1875 c.Check(cr.ContainerArvClient.(*ArvTestClient).CalledWith("collection.manifest_text", "./a b1946ac92492d2347c6235b4d2611184+6 0:6:out.txt\n./b 38af5c54926b620264ab1501150cf189+5 0:5:err.txt\n"), NotNil)
1878 func (s *TestSuite) TestNumberRoundTrip(c *C) {
1879 s.api.callraw = true
1880 err := s.runner.fetchContainerRecord()
1881 c.Assert(err, IsNil)
1882 jsondata, err := json.Marshal(s.runner.Container.Mounts["/json"].Content)
1883 c.Logf("%#v", s.runner.Container)
1885 c.Check(string(jsondata), Equals, `{"number":123456789123456789}`)
1888 func (s *TestSuite) TestFullBrokenDocker(c *C) {
1890 for _, setup := range []func(){
1892 c.Log("// waitErr = ocl runtime error")
1893 s.executor.waitErr = errors.New(`Error response from daemon: oci runtime error: container_linux.go:247: starting container process caused "process_linux.go:359: container init caused \"rootfs_linux.go:54: mounting \\\"/tmp/keep453790790/by_id/99999999999999999999999999999999+99999/myGenome\\\" to rootfs \\\"/tmp/docker/overlay2/9999999999999999999999999999999999999999999999999999999999999999/merged\\\" at \\\"/tmp/docker/overlay2/9999999999999999999999999999999999999999999999999999999999999999/merged/keep/99999999999999999999999999999999+99999/myGenome\\\" caused \\\"no such file or directory\\\"\""`)
1894 nextState = "Cancelled"
1897 c.Log("// loadErr = cannot connect")
1898 s.executor.loadErr = errors.New("Cannot connect to the Docker daemon at unix:///var/run/docker.sock. Is the docker daemon running?")
1899 *brokenNodeHook = c.MkDir() + "/broken-node-hook"
1900 err := ioutil.WriteFile(*brokenNodeHook, []byte("#!/bin/sh\nexec echo killme\n"), 0700)
1901 c.Assert(err, IsNil)
1902 nextState = "Queued"
1907 s.fullRunHelper(c, `{
1908 "command": ["echo", "hello world"],
1909 "container_image": "`+arvadostest.DockerImage112PDH+`",
1912 "mounts": {"/tmp": {"kind": "tmp"} },
1913 "output_path": "/tmp",
1915 "runtime_constraints": {},
1917 }`, nil, 0, func() {})
1918 c.Check(s.api.CalledWith("container.state", nextState), NotNil)
1919 c.Check(s.api.Logs["crunch-run"].String(), Matches, "(?ms).*unable to run containers.*")
1920 if *brokenNodeHook != "" {
1921 c.Check(s.api.Logs["crunch-run"].String(), Matches, "(?ms).*Running broken node hook.*")
1922 c.Check(s.api.Logs["crunch-run"].String(), Matches, "(?ms).*killme.*")
1923 c.Check(s.api.Logs["crunch-run"].String(), Not(Matches), "(?ms).*Writing /var/lock/crunch-run-broken to mark node as broken.*")
1925 c.Check(s.api.Logs["crunch-run"].String(), Matches, "(?ms).*Writing /var/lock/crunch-run-broken to mark node as broken.*")
1930 func (s *TestSuite) TestBadCommand(c *C) {
1931 for _, startError := range []string{
1932 `panic: standard_init_linux.go:175: exec user process caused "no such file or directory"`,
1933 `Error response from daemon: Cannot start container 41f26cbc43bcc1280f4323efb1830a394ba8660c9d1c2b564ba42bf7f7694845: [8] System error: no such file or directory`,
1934 `Error response from daemon: Cannot start container 58099cd76c834f3dc2a4fb76c8028f049ae6d4fdf0ec373e1f2cfea030670c2d: [8] System error: exec: "foobar": executable file not found in $PATH`,
1937 s.executor.startErr = errors.New(startError)
1938 s.fullRunHelper(c, `{
1939 "command": ["echo", "hello world"],
1940 "container_image": "`+arvadostest.DockerImage112PDH+`",
1943 "mounts": {"/tmp": {"kind": "tmp"} },
1944 "output_path": "/tmp",
1946 "runtime_constraints": {},
1948 }`, nil, 0, func() {})
1949 c.Check(s.api.CalledWith("container.state", "Cancelled"), NotNil)
1950 c.Check(s.api.Logs["crunch-run"].String(), Matches, "(?ms).*Possible causes:.*is missing.*")
1954 func (s *TestSuite) TestSecretTextMountPoint(c *C) {
1956 "command": ["true"],
1957 "container_image": "` + arvadostest.DockerImage112PDH + `",
1960 "/tmp": {"kind": "tmp"},
1961 "/tmp/secret.conf": {"kind": "text", "content": "mypassword"}
1965 "output_path": "/tmp",
1967 "runtime_constraints": {},
1971 s.fullRunHelper(c, helperRecord, nil, 0, func() {
1972 content, err := ioutil.ReadFile(s.runner.HostOutputDir + "/secret.conf")
1974 c.Check(string(content), Equals, "mypassword")
1977 c.Check(s.api.CalledWith("container.exit_code", 0), NotNil)
1978 c.Check(s.api.CalledWith("container.state", "Complete"), NotNil)
1979 c.Check(s.runner.ContainerArvClient.(*ArvTestClient).CalledWith("collection.manifest_text", ". 34819d7beeabb9260a5c854bc85b3e44+10 0:10:secret.conf\n"), NotNil)
1980 c.Check(s.runner.ContainerArvClient.(*ArvTestClient).CalledWith("collection.manifest_text", ""), IsNil)
1982 // under secret mounts, not captured in output
1984 "command": ["true"],
1985 "container_image": "` + arvadostest.DockerImage112PDH + `",
1988 "/tmp": {"kind": "tmp"}
1991 "/tmp/secret.conf": {"kind": "text", "content": "mypassword"}
1993 "output_path": "/tmp",
1995 "runtime_constraints": {},
2000 s.fullRunHelper(c, helperRecord, nil, 0, func() {
2001 content, err := ioutil.ReadFile(s.runner.HostOutputDir + "/secret.conf")
2003 c.Check(string(content), Equals, "mypassword")
2006 c.Check(s.api.CalledWith("container.exit_code", 0), NotNil)
2007 c.Check(s.api.CalledWith("container.state", "Complete"), NotNil)
2008 c.Check(s.runner.ContainerArvClient.(*ArvTestClient).CalledWith("collection.manifest_text", ". 34819d7beeabb9260a5c854bc85b3e44+10 0:10:secret.conf\n"), IsNil)
2009 c.Check(s.runner.ContainerArvClient.(*ArvTestClient).CalledWith("collection.manifest_text", ""), NotNil)
2012 type FakeProcess struct {
2016 func (fp FakeProcess) CmdlineSlice() ([]string, error) {
2017 return fp.cmdLine, nil