2 # Copyright (C) The Arvados Authors. All rights reserved.
4 # SPDX-License-Identifier: AGPL-3.0
6 . `dirname "$(readlink -f "$0")"`/libcloud-pin.sh
9 . `dirname "$(readlink -f "$0")"`/run-library.sh
11 read -rd "\000" helpmessage <<EOF
12 $(basename $0): Install and test Arvados components.
14 Exit non-zero if any tests fail.
17 $(basename $0) WORKSPACE=/path/to/arvados [options]
21 --skip FOO Do not test the FOO component.
22 --skip sanity Skip initial dev environment sanity checks.
23 --skip install Do not run any install steps. Just run tests.
24 You should provide GOPATH, GEMHOME, and VENVDIR options
25 from a previous invocation if you use this option.
26 --only FOO Do not test anything except the FOO component.
27 --temp DIR Install components and dependencies under DIR instead of
28 making a new temporary directory. Implies --leave-temp.
29 --leave-temp Do not remove GOPATH, virtualenv, and other temp dirs at exit.
30 Instead, show the path to give as --temp to reuse them in
31 subsequent invocations.
32 --repeat N Repeat each install/test step until it succeeds N times.
33 --retry Prompt to retry if an install or test suite fails.
34 --only-install Run specific install step
35 --short Skip (or scale down) some slow tests.
36 --interactive Set up, then prompt for test/install steps to perform.
37 WORKSPACE=path Arvados source tree to test.
38 CONFIGSRC=path Dir with api server config files to copy into source tree.
39 (If none given, leave config files alone in source tree.)
40 services/api_test="TEST=test/functional/arvados/v1/collections_controller_test.rb"
41 Restrict apiserver tests to the given file
42 sdk/python_test="--test-suite tests.test_keep_locator"
43 Restrict Python SDK tests to the given class
44 apps/workbench_test="TEST=test/integration/pipeline_instances_test.rb"
45 Restrict Workbench tests to the given file
46 services/arv-git-httpd_test="-check.vv"
47 Show all log messages, even when tests pass (also works
48 with services/keepstore_test etc.)
50 Print more debug messages
51 envvar=value Set \$envvar to value. Primarily useful for WORKSPACE,
52 *_test, and other examples shown above.
54 Assuming "--skip install" is not given, all components are installed
55 into \$GOPATH, \$VENDIR, and \$GEMHOME before running any tests. Many
56 test suites depend on other components being installed, and installing
57 everything tends to be quicker than debugging dependencies.
59 As a special concession to the current CI server config, CONFIGSRC
60 defaults to $HOME/arvados-api-server if that directory exists.
62 More information and background:
64 https://arvados.org/projects/arvados/wiki/Running_tests
69 apps/workbench_units (*)
70 apps/workbench_functionals (*)
71 apps/workbench_integration (*)
72 apps/workbench_benchmark
73 apps/workbench_profile
84 lib/dispatchcloud/container
85 lib/dispatchcloud/scheduler
86 lib/dispatchcloud/ssh_executor
87 lib/dispatchcloud/worker
90 services/arv-git-httpd
92 services/dockercleaner
101 services/nodemanager_integration
103 services/crunch-dispatch-local
104 services/crunch-dispatch-slurm
127 tools/crunchstat-summary
128 tools/crunchstat-summary:py3
131 tools/keep-block-check
133 (*) apps/workbench is shorthand for apps/workbench_units +
134 apps/workbench_functionals + apps/workbench_integration
138 # First make sure to remove any ARVADOS_ variables from the calling
139 # environment that could interfere with the tests.
140 unset $(env | cut -d= -f1 | grep \^ARVADOS_)
142 # Reset other variables that could affect our [tests'] behavior by
159 if [[ -z "$temp" ]]; then
160 # we didn't even get as far as making a temp dir
162 elif [[ -z "$temp_preserve" ]]; then
165 echo "Leaving behind temp dirs in $temp"
171 echo >&2 "Fatal: $* (encountered in ${FUNCNAME[1]} at ${BASH_SOURCE[1]} line ${BASH_LINENO[0]})"
177 if which create-plot-data-from-log.sh >/dev/null; then
178 create-plot-data-from-log.sh $BUILD_NUMBER "$WORKSPACE/apps/workbench/log/test.log" "$WORKSPACE/apps/workbench/log/"
180 rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
182 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
189 [[ -n "${skip[sanity]}" ]] && return 0
190 ( [[ -n "$WORKSPACE" ]] && [[ -d "$WORKSPACE/services" ]] ) \
191 || fatal "WORKSPACE environment variable not set to a source directory (see: $0 --help)"
192 echo Checking dependencies:
193 echo -n 'virtualenv: '
194 virtualenv --version \
195 || fatal "No virtualenv. Try: apt-get install virtualenv (on ubuntu: python-virtualenv)"
198 || fatal "No ruby. Install >=2.1.9 (using rbenv, rvm, or source)"
201 || fatal "No go binary. See http://golang.org/doc/install"
202 [[ $(go version) =~ go1.([0-9]+) ]] && [[ ${BASH_REMATCH[1]} -ge 10 ]] \
203 || fatal "Go >= 1.10 required. See http://golang.org/doc/install"
205 gcc --version | egrep ^gcc \
206 || fatal "No gcc. Try: apt-get install build-essential"
208 find /usr/include -path '*fuse/fuse.h' | egrep --max-count=1 . \
209 || fatal "No fuse/fuse.h. Try: apt-get install libfuse-dev"
211 find /usr/include -path '*gnutls/gnutls.h' | egrep --max-count=1 . \
212 || fatal "No gnutls/gnutls.h. Try: apt-get install libgnutls28-dev"
213 echo -n 'Python2 pyconfig.h: '
214 find /usr/include -path '*/python2*/pyconfig.h' | egrep --max-count=1 . \
215 || fatal "No Python2 pyconfig.h. Try: apt-get install python2.7-dev"
216 echo -n 'Python3 pyconfig.h: '
217 find /usr/include -path '*/python3*/pyconfig.h' | egrep --max-count=1 . \
218 || fatal "No Python3 pyconfig.h. Try: apt-get install python3-dev"
220 PATH="$PATH:/sbin:/usr/sbin:/usr/local/sbin" nginx -v \
221 || fatal "No nginx. Try: apt-get install nginx"
223 perl -v | grep version \
224 || fatal "No perl. Try: apt-get install perl"
225 for mod in ExtUtils::MakeMaker JSON LWP Net::SSL; do
226 echo -n "perl $mod: "
227 perl -e "use $mod; print \"\$$mod::VERSION\\n\"" \
228 || fatal "No $mod. Try: apt-get install perl-modules libcrypt-ssleay-perl libjson-perl libwww-perl"
232 || fatal "No gitolite. Try: apt-get install gitolite3"
235 || fatal "No npm. Try: wget -O- https://nodejs.org/dist/v6.11.2/node-v6.11.2-linux-x64.tar.xz | sudo tar -C /usr/local -xJf - && sudo ln -s ../node-v6.11.2-linux-x64/bin/{node,npm} /usr/local/bin/"
237 cadaver --version | grep -w cadaver \
238 || fatal "No cadaver. Try: apt-get install cadaver"
239 echo -n 'libattr1 xattr.h: '
240 find /usr/include -path '*/attr/xattr.h' | egrep --max-count=1 . \
241 || fatal "No libattr1 xattr.h. Try: apt-get install libattr1-dev"
242 echo -n 'libcurl curl.h: '
243 find /usr/include -path '*/curl/curl.h' | egrep --max-count=1 . \
244 || fatal "No libcurl curl.h. Try: apt-get install libcurl4-gnutls-dev"
245 echo -n 'libpq libpq-fe.h: '
246 find /usr/include -path '*/postgresql/libpq-fe.h' | egrep --max-count=1 . \
247 || fatal "No libpq libpq-fe.h. Try: apt-get install libpq-dev"
248 echo -n 'services/api/config/database.yml: '
249 if [[ ! -f "$WORKSPACE/services/api/config/database.yml" ]]; then
250 fatal "Please provide a database.yml file for the test suite"
254 echo -n 'postgresql: '
255 psql --version || fatal "No postgresql. Try: apt-get install postgresql postgresql-client-common"
256 echo -n 'phantomjs: '
257 phantomjs --version || fatal "No phantomjs. Try: apt-get install phantomjs"
259 which Xvfb || fatal "No xvfb. Try: apt-get install xvfb"
261 dot -V || fatal "No graphviz. Try: apt-get install graphviz"
262 echo -n 'geckodriver: '
263 geckodriver --version | grep ^geckodriver || echo "No geckodriver. Try: wget -O- https://github.com/mozilla/geckodriver/releases/download/v0.23.0/geckodriver-v0.23.0-linux64.tar.gz | sudo tar -C /usr/local/bin -xzf - geckodriver"
265 if [[ "$NEED_SDK_R" = true ]]; then
268 which Rscript || fatal "No Rscript. Try: apt-get install r-base"
270 Rscript -e "library('testthat')" || fatal "No testthat. Try: apt-get install r-cran-testthat"
271 # needed for roxygen2, needed for devtools, needed for R sdk
272 pkg-config --exists libxml-2.0 || fatal "No libxml2. Try: apt-get install libxml2-dev"
273 # needed for pkgdown, builds R SDK doc pages
274 which pandoc || fatal "No pandoc. Try: apt-get install pandoc"
279 # i.e. rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
280 # $BUILD_NUMBER is set by Jenkins if this script is being called as part of a Jenkins run
281 if [[ -f "$1/$2" ]]; then
282 THEDATE=`date +%Y%m%d%H%M%S`
283 mv "$1/$2" "$1/$THEDATE-$BUILD_NUMBER-$2"
284 gzip "$1/$THEDATE-$BUILD_NUMBER-$2"
292 skip[apps/workbench_profile]=1
293 # nodemanager_integration tests are not reliable, see #12061.
294 skip[services/nodemanager_integration]=1
301 echo >&2 "$helpmessage"
309 only[$1]=1; skip[$1]=""; shift
321 only_install="$1"; shift
331 repeat=$((${1}+0)); shift
337 suite="${arg%%_test=*}"
339 testargs["$suite"]="$args"
342 eval export $(echo $arg | cut -d= -f1)=\"$(echo $arg | cut -d= -f2-)\"
345 echo >&2 "$0: Unrecognized option: '$arg'. Try: $0 --help"
351 # R SDK installation is very slow (~360s in a clean environment) and only
352 # required when testing it. Skip that step if it is not needed.
355 if [[ ${#only[@]} -ne 0 ]] &&
356 [[ -z "${only['sdk/R']}" && -z "${only['doc']}" ]]; then
360 if [[ ${skip["sdk/R"]} == 1 && ${skip["doc"]} == 1 ]]; then
364 if [[ $NEED_SDK_R == false ]]; then
365 echo "R SDK not needed, it will not be installed."
369 if [[ -n "$ARVADOS_TEST_API_HOST" ]]; then
372 . "$VENVDIR/bin/activate"
373 echo 'Starting API, keepproxy, keep-web, ws, arv-git-httpd, and nginx ssl proxy...'
374 if [[ ! -d "$WORKSPACE/services/api/log" ]]; then
375 mkdir -p "$WORKSPACE/services/api/log"
377 # Remove empty api.pid file if it exists
378 if [[ -f "$WORKSPACE/tmp/api.pid" && ! -s "$WORKSPACE/tmp/api.pid" ]]; then
379 rm -f "$WORKSPACE/tmp/api.pid"
381 all_services_stopped=
384 && eval $(python sdk/python/tests/run_test_server.py start --auth admin || echo "fail=1; false") \
385 && export ARVADOS_TEST_API_HOST="$ARVADOS_API_HOST" \
386 && export ARVADOS_TEST_API_INSTALLED="$$" \
387 && python sdk/python/tests/run_test_server.py start_controller \
388 && python sdk/python/tests/run_test_server.py start_keep_proxy \
389 && python sdk/python/tests/run_test_server.py start_keep-web \
390 && python sdk/python/tests/run_test_server.py start_arv-git-httpd \
391 && python sdk/python/tests/run_test_server.py start_ws \
392 && eval $(python sdk/python/tests/run_test_server.py start_nginx || echo "fail=1; false") \
393 && (env | egrep ^ARVADOS) \
396 if [[ $fail != 0 ]]; then
397 unset ARVADOS_TEST_API_HOST
403 if [[ -n "$all_services_stopped" ]]; then
406 unset ARVADOS_TEST_API_HOST
407 . "$VENVDIR/bin/activate" || return
409 && python sdk/python/tests/run_test_server.py stop_nginx \
410 && python sdk/python/tests/run_test_server.py stop_arv-git-httpd \
411 && python sdk/python/tests/run_test_server.py stop_ws \
412 && python sdk/python/tests/run_test_server.py stop_keep-web \
413 && python sdk/python/tests/run_test_server.py stop_keep_proxy \
414 && python sdk/python/tests/run_test_server.py stop_controller \
415 && python sdk/python/tests/run_test_server.py stop \
416 && all_services_stopped=1
421 failures+=("($(basename $0) interrupted)")
426 setup_ruby_environment() {
427 if [[ -s "$HOME/.rvm/scripts/rvm" ]] ; then
428 source "$HOME/.rvm/scripts/rvm"
430 elif [[ -s "/usr/local/rvm/scripts/rvm" ]] ; then
431 source "/usr/local/rvm/scripts/rvm"
437 if [[ "$using_rvm" == true ]]; then
438 # If rvm is in use, we can't just put separate "dependencies"
439 # and "gems-under-test" paths to GEM_PATH: passenger resets
440 # the environment to the "current gemset", which would lose
441 # our GEM_PATH and prevent our test suites from running ruby
442 # programs (for example, the Workbench test suite could not
443 # boot an API server or run arv). Instead, we have to make an
444 # rvm gemset and use it for everything.
446 [[ `type rvm | head -n1` == "rvm is a function" ]] \
449 # Put rvm's favorite path back in first place (overriding
450 # virtualenv, which just put itself there). Ignore rvm's
451 # complaint about not being in first place already.
452 rvm use @default 2>/dev/null
454 # Create (if needed) and switch to an @arvados-tests-* gemset,
455 # salting the gemset name so it doesn't interfere with
456 # concurrent builds in other workspaces. Leave the choice of
457 # ruby to the caller.
458 gemset="arvados-tests-$(echo -n "${WORKSPACE}" | md5sum | head -c16)"
459 rvm use "@${gemset}" --create \
460 || fatal 'rvm gemset setup'
464 # When our "bundle install"s need to install new gems to
465 # satisfy dependencies, we want them to go where "gem install
466 # --user-install" would put them. (However, if the caller has
467 # already set GEM_HOME, we assume that's where dependencies
468 # should be installed, and we should leave it alone.)
470 if [ -z "$GEM_HOME" ]; then
471 user_gempath="$(gem env gempath)"
472 export GEM_HOME="${user_gempath%%:*}"
474 PATH="$(gem env gemdir)/bin:$PATH"
476 # When we build and install our own gems, we install them in our
477 # $GEMHOME tmpdir, and we want them to be at the front of GEM_PATH and
478 # PATH so integration tests prefer them over other versions that
479 # happen to be installed in $user_gempath, system dirs, etc.
481 tmpdir_gem_home="$(env - PATH="$PATH" HOME="$GEMHOME" gem env gempath | cut -f1 -d:)"
482 PATH="$tmpdir_gem_home/bin:$PATH"
483 export GEM_PATH="$tmpdir_gem_home"
485 echo "Will install dependencies to $(gem env gemdir)"
486 echo "Will install arvados gems to $tmpdir_gem_home"
487 echo "Gem search path is GEM_PATH=$GEM_PATH"
489 bundle config || gem install bundler \
490 || fatal 'install bundler'
494 if [[ "$using_rvm" == true ]]; then
497 GEM_HOME="$tmpdir_gem_home" GEM_PATH="$tmpdir_gem_home" "$@"
501 gem_uninstall_if_exists() {
502 if gem list "$1\$" | egrep '^\w'; then
503 gem uninstall --force --all --executables "$1"
508 local venvdest="$1"; shift
509 if ! [[ -e "$venvdest/bin/activate" ]] || ! [[ -e "$venvdest/bin/pip" ]]; then
510 virtualenv --setuptools "$@" "$venvdest" || fatal "virtualenv $venvdest failed"
511 elif [[ -n "$short" ]]; then
514 if [[ $("$venvdest/bin/python" --version 2>&1) =~ \ 3\.[012]\. ]]; then
515 # pip 8.0.0 dropped support for python 3.2, e.g., debian wheezy
516 "$venvdest/bin/pip" install --no-cache-dir 'setuptools>=18.5' 'pip>=7,<8'
518 "$venvdest/bin/pip" install --no-cache-dir 'setuptools>=18.5' 'pip>=7'
520 # ubuntu1404 can't seem to install mock via tests_require, but it can do this.
521 "$venvdest/bin/pip" install --no-cache-dir 'mock>=1.0' 'pbr<1.7.0'
527 echo "WORKSPACE=$WORKSPACE"
529 if [[ -z "$CONFIGSRC" ]] && [[ -d "$HOME/arvados-api-server" ]]; then
530 # Jenkins expects us to use this by default.
531 CONFIGSRC="$HOME/arvados-api-server"
534 # Clean up .pyc files that may exist in the workspace
536 find -name '*.pyc' -delete
538 if [[ -z "$temp" ]]; then
542 # Set up temporary install dirs (unless existing dirs were supplied)
543 for tmpdir in VENVDIR VENV3DIR GOPATH GEMHOME PERLINSTALLBASE R_LIBS
545 if [[ -z "${!tmpdir}" ]]; then
546 eval "$tmpdir"="$temp/$tmpdir"
548 if ! [[ -d "${!tmpdir}" ]]; then
549 mkdir "${!tmpdir}" || fatal "can't create ${!tmpdir} (does $temp exist?)"
553 rm -vf "${WORKSPACE}/tmp/*.log"
555 export PERLINSTALLBASE
556 export PERL5LIB="$PERLINSTALLBASE/lib/perl5${PERL5LIB:+:$PERL5LIB}"
562 # Jenkins config requires that glob tmp/*.log match something. Ensure
563 # that happens even if we don't end up running services that set up
565 mkdir -p "${WORKSPACE}/tmp/" || fatal "could not mkdir ${WORKSPACE}/tmp"
566 touch "${WORKSPACE}/tmp/controller.log" || fatal "could not touch ${WORKSPACE}/tmp/controller.log"
568 unset http_proxy https_proxy no_proxy
571 # Note: this must be the last time we change PATH, otherwise rvm will
573 setup_ruby_environment
581 mkdir -p "$GOPATH/src/git.curoverse.com"
582 if [[ ! -h "$GOPATH/src/git.curoverse.com/arvados.git" ]]; then
584 "$GOPATH/src/git.curoverse.com/arvados.git/tmp/GOPATH" \
585 "$GOPATH/src/git.curoverse.com/arvados.git/tmp" \
586 "$GOPATH/src/git.curoverse.com/arvados.git"; do
587 [[ -d "$d" ]] && rmdir "$d"
591 "$GOPATH/src/git.curoverse.com/arvados.git/arvados" \
592 "$GOPATH/src/git.curoverse.com/arvados.git"; do
593 [[ -h "$d" ]] && rm "$d"
595 ln -vsfT "$WORKSPACE" "$GOPATH/src/git.curoverse.com/arvados.git"
596 go get -v github.com/kardianos/govendor
597 cd "$GOPATH/src/git.curoverse.com/arvados.git"
598 if [[ -n "$short" ]]; then
600 "$GOPATH/bin/govendor" sync
602 # Remove cached source dirs in workdir. Otherwise, they will
603 # not qualify as +missing or +external below, and we won't be
604 # able to detect that they're missing from vendor/vendor.json.
607 "$GOPATH/bin/govendor" sync
608 [[ -z $("$GOPATH/bin/govendor" list +unused +missing +external | tee /dev/stderr) ]] \
609 || fatal "vendor/vendor.json has unused or missing dependencies -- try:
611 (export GOPATH=\"${GOPATH}\"; cd \$GOPATH/src/git.curoverse.com/arvados.git && \$GOPATH/bin/govendor add +missing +external && \$GOPATH/bin/govendor remove +unused)
615 ) || fatal "Go setup failed"
617 setup_virtualenv "$VENVDIR" --python python2.7
618 . "$VENVDIR/bin/activate"
620 # Needed for run_test_server.py which is used by certain (non-Python) tests.
621 pip install --no-cache-dir PyYAML \
622 || fatal "pip install PyYAML failed"
624 # Preinstall libcloud if using a fork; otherwise nodemanager "pip
625 # install" won't pick it up by default.
626 if [[ -n "$LIBCLOUD_PIN_SRC" ]]; then
627 pip freeze 2>/dev/null | egrep ^apache-libcloud==$LIBCLOUD_PIN \
628 || pip install --pre --ignore-installed --no-cache-dir "$LIBCLOUD_PIN_SRC" >/dev/null \
629 || fatal "pip install apache-libcloud failed"
632 # Deactivate Python 2 virtualenv
635 # If Python 3 is available, set up its virtualenv in $VENV3DIR.
636 # Otherwise, skip dependent tests.
637 PYTHON3=$(which python3)
638 if [[ ${?} = 0 ]]; then
639 setup_virtualenv "$VENV3DIR" --python python3
644 Warning: python3 could not be found. Python 3 tests will be skipped.
649 if ! which bundler >/dev/null
651 gem install --user-install bundler || fatal 'Could not install bundler'
660 if [[ "$remain" -gt 1 ]]; then
661 remain=$((${remain}-1))
662 title "(repeating ${remain} more times)"
666 elif [[ "$retry" == 1 ]]; then
667 read -p 'Try again? [Y/n] ' x
668 if [[ "$x" != "y" ]] && [[ "$x" != "" ]]
680 apps/workbench_units | apps/workbench_functionals | apps/workbench_integration)
683 services/nodemanager | services/nodemanager_integration)
684 suite=services/nodemanager_suite
690 if [[ -n "${skip[$suite]}" || \
691 -n "${skip[$1]}" || \
692 (${#only[@]} -ne 0 && ${only[$suite]} -eq 0 && ${only[$1]} -eq 0) ]]; then
699 doc | lib/cli | lib/cloud/azure | lib/cloud/ec2 | lib/cmd | lib/dispatchcloud/ssh_executor | lib/dispatchcloud/worker)
700 # don't care whether services are running
703 if ! start_services; then
704 title "test $1 -- failed to start services"
709 retry do_test_once ${@}
718 if which deactivate >/dev/null; then deactivate; fi
719 if ! . "$VENVDIR/bin/activate"
722 elif [[ "$2" == "go" ]]
724 covername="coverage-$(echo "$1" | sed -e 's/\//_/g')"
725 coverflags=("-covermode=count" "-coverprofile=$WORKSPACE/tmp/.$covername.tmp")
726 # We do "go get -t" here to catch compilation errors
727 # before trying "go test". Otherwise, coverage-reporting
728 # mode makes Go show the wrong line numbers when reporting
729 # compilation errors.
730 go get -ldflags "-X main.version=${ARVADOS_VERSION:-$(git log -n1 --format=%H)-dev}" -t "git.curoverse.com/arvados.git/$1" && \
731 cd "$GOPATH/src/git.curoverse.com/arvados.git/$1" && \
732 [[ -z "$(gofmt -e -d . | tee /dev/stderr)" ]] && \
733 if [[ -n "${testargs[$1]}" ]]
735 # "go test -check.vv giturl" doesn't work, but this
737 go test ${short:+-short} ${testargs[$1]}
739 # The above form gets verbose even when testargs is
740 # empty, so use this form in such cases:
741 go test ${short:+-short} ${coverflags[@]} "git.curoverse.com/arvados.git/$1"
744 if [[ -f "$WORKSPACE/tmp/.$covername.tmp" ]]
746 go tool cover -html="$WORKSPACE/tmp/.$covername.tmp" -o "$WORKSPACE/tmp/$covername.html"
747 rm "$WORKSPACE/tmp/.$covername.tmp"
749 elif [[ "$2" == "pip" ]]
752 cd "$WORKSPACE/$1" && while :
754 tries=$((${tries}+1))
755 # $3 can name a path directory for us to use, including trailing
756 # slash; e.g., the bin/ subdirectory of a virtualenv.
757 "${3}python" setup.py ${short:+--short-tests-only} test ${testargs[$1]}
759 if [[ ${tries} < 3 && ${result} == 137 ]]
761 printf '\n*****\n%s tests killed -- retrying\n*****\n\n' "$1"
767 elif [[ "$2" != "" ]]
774 checkexit $result "$1 tests"
775 title "test $1 -- `timer`"
780 if [[ -n "${skip[install]}" || ( -n "${only_install}" && "${only_install}" != "${1}" && "${only_install}" != "${2}" ) ]]; then
783 retry do_install_once ${@}
790 if which deactivate >/dev/null; then deactivate; fi
791 if [[ "$1" != "env" ]] && ! . "$VENVDIR/bin/activate"; then
793 elif [[ "$2" == "go" ]]
795 go get -ldflags "-X main.version=${ARVADOS_VERSION:-$(git log -n1 --format=%H)-dev}" -t "git.curoverse.com/arvados.git/$1"
796 elif [[ "$2" == "pip" ]]
798 # $3 can name a path directory for us to use, including trailing
799 # slash; e.g., the bin/ subdirectory of a virtualenv.
801 # Need to change to a different directory after creating
802 # the source dist package to avoid a pip bug.
803 # see https://arvados.org/issues/5766 for details.
805 # Also need to install twice, because if it believes the package is
806 # already installed, pip it won't install it. So the first "pip
807 # install" ensures that the dependencies are met, the second "pip
808 # install" ensures that we've actually installed the local package
811 && "${3}python" setup.py sdist rotate --keep=1 --match .tar.gz \
813 && "${3}pip" install --no-cache-dir --quiet "$WORKSPACE/$1/dist"/*.tar.gz \
814 && "${3}pip" install --no-cache-dir --quiet --no-deps --ignore-installed "$WORKSPACE/$1/dist"/*.tar.gz
815 elif [[ "$2" != "" ]]
822 checkexit $result "$1 install"
823 title "install $1 -- `timer`"
827 bundle_install_trylocal() {
830 echo "(Running bundle install --local. 'could not find package' messages are OK.)"
831 if ! bundle install --local --no-deployment; then
832 echo "(Running bundle install again, without --local.)"
833 bundle install --no-deployment
840 cd "$WORKSPACE/doc" \
841 && bundle_install_trylocal \
848 with_test_gemset gem_uninstall_if_exists "$gemname" \
849 && cd "$WORKSPACE/$srcpath" \
850 && bundle_install_trylocal \
851 && gem build "$gemname.gemspec" \
852 && with_test_gemset gem install --no-ri --no-rdoc $(ls -t "$gemname"-*.gem|head -n1)
856 install_gem arvados sdk/ruby
860 if [[ "$NEED_SDK_R" = true ]]; then
861 cd "$WORKSPACE/sdk/R" \
862 && Rscript --vanilla install_deps.R
867 cd "$WORKSPACE/sdk/perl" \
868 && perl Makefile.PL INSTALL_BASE="$PERLINSTALLBASE" \
869 && make install INSTALLDIRS=perl
873 install_gem arvados-cli sdk/cli
876 install_services/login-sync() {
877 install_gem arvados-login-sync services/login-sync
880 install_services/api() {
881 cd "$WORKSPACE/services/api" \
882 && RAILS_ENV=test bundle_install_trylocal
884 rm -f config/environments/test.rb
885 cp config/environments/test.rb.example config/environments/test.rb
887 if [ -n "$CONFIGSRC" ]
889 for f in database.yml
891 cp "$CONFIGSRC/$f" config/ || fatal "$f"
895 # Clear out any lingering postgresql connections to the test
896 # database, so that we can drop it. This assumes the current user
897 # is a postgresql superuser.
898 cd "$WORKSPACE/services/api" \
899 && test_database=$(python -c "import yaml; print yaml.load(file('config/database.yml'))['test']['database']") \
900 && psql "$test_database" -c "SELECT pg_terminate_backend (pg_stat_activity.pid::int) FROM pg_stat_activity WHERE pg_stat_activity.datname = '$test_database';" 2>/dev/null
902 mkdir -p "$WORKSPACE/services/api/tmp/pids"
904 cert="$WORKSPACE/services/api/tmp/self-signed"
905 if [[ ! -e "$cert.pem" || "$(date -r "$cert.pem" +%s)" -lt 1512659226 ]]; then
907 dir="$WORKSPACE/services/api/tmp"
909 openssl req -newkey rsa:2048 -nodes -subj '/C=US/ST=State/L=City/CN=localhost' -out "$cert.csr" -keyout "$cert.key" </dev/null
910 openssl x509 -req -in "$cert.csr" -signkey "$cert.key" -out "$cert.pem" -days 3650 -extfile <(printf 'subjectAltName=DNS:localhost,DNS:::1,DNS:0.0.0.0,DNS:127.0.0.1,IP:::1,IP:0.0.0.0,IP:127.0.0.1')
914 cd "$WORKSPACE/services/api" \
916 && mkdir -p tmp/git \
918 && tar xf ../../test/test.git.tar \
919 && mkdir -p internal.git \
920 && git --git-dir internal.git init \
923 cd "$WORKSPACE/services/api" \
924 && RAILS_ENV=test bundle exec rake db:drop \
925 && RAILS_ENV=test bundle exec rake db:setup \
926 && RAILS_ENV=test bundle exec rake db:fixtures:load
929 declare -a pythonstuff
936 services/dockercleaner:py3
939 tools/crunchstat-summary
954 lib/dispatchcloud/container
955 lib/dispatchcloud/scheduler
956 lib/dispatchcloud/ssh_executor
957 lib/dispatchcloud/worker
970 services/arv-git-httpd
976 services/keep-balance
978 services/crunch-dispatch-local
979 services/crunch-dispatch-slurm
982 tools/keep-block-check
988 install_apps/workbench() {
989 cd "$WORKSPACE/apps/workbench" \
990 && mkdir -p tmp/cache \
991 && RAILS_ENV=test bundle_install_trylocal \
992 && RAILS_ENV=test RAILS_GROUPS=assets bundle exec rake npm:install
999 ARVADOS_API_HOST=qr1hi.arvadosapi.com
1000 # Make sure python-epydoc is installed or the next line won't
1002 PYTHONPATH=$WORKSPACE/sdk/python/ bundle exec rake linkchecker baseurl=file://$WORKSPACE/doc/.site/ arvados_workbench_host=https://workbench.$ARVADOS_API_HOST arvados_api_host=$ARVADOS_API_HOST
1006 test_services/api() {
1007 rm -f "$WORKSPACE/services/api/git-commit.version"
1008 cd "$WORKSPACE/services/api" \
1009 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test TESTOPTS=-v ${testargs[services/api]}
1013 cd "$WORKSPACE/sdk/ruby" \
1014 && bundle exec rake test TESTOPTS=-v ${testargs[sdk/ruby]}
1018 if [[ "$NEED_SDK_R" = true ]]; then
1019 cd "$WORKSPACE/sdk/R" \
1020 && Rscript --vanilla run_test.R
1025 cd "$WORKSPACE/sdk/cli" \
1026 && mkdir -p /tmp/keep \
1027 && KEEP_LOCAL_STORE=/tmp/keep bundle exec rake test TESTOPTS=-v ${testargs[sdk/cli]}
1030 test_sdk/java-v2() {
1031 cd "$WORKSPACE/sdk/java-v2" && ./gradlew test
1034 test_services/login-sync() {
1035 cd "$WORKSPACE/services/login-sync" \
1036 && bundle exec rake test TESTOPTS=-v ${testargs[services/login-sync]}
1039 test_services/nodemanager_integration() {
1040 cd "$WORKSPACE/services/nodemanager" \
1041 && tests/integration_test.py ${testargs[services/nodemanager_integration]}
1044 test_apps/workbench_units() {
1045 cd "$WORKSPACE/apps/workbench" \
1046 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:units TESTOPTS=-v ${testargs[apps/workbench]}
1049 test_apps/workbench_functionals() {
1050 cd "$WORKSPACE/apps/workbench" \
1051 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:functionals TESTOPTS=-v ${testargs[apps/workbench]}
1054 test_apps/workbench_integration() {
1055 cd "$WORKSPACE/apps/workbench" \
1056 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:integration TESTOPTS=-v ${testargs[apps/workbench]}
1059 test_apps/workbench_benchmark() {
1060 cd "$WORKSPACE/apps/workbench" \
1061 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:benchmark ${testargs[apps/workbench_benchmark]}
1064 test_apps/workbench_profile() {
1065 cd "$WORKSPACE/apps/workbench" \
1066 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:profile ${testargs[apps/workbench_profile]}
1070 # Install parts needed by test suites
1072 do_install cmd/arvados-server go
1075 do_install sdk/python pip
1077 do_install services/api
1078 do_install services/arv-git-httpd go
1079 do_install services/keepproxy go
1080 do_install services/keepstore go
1081 do_install services/keep-web go
1082 do_install services/ws go
1092 do_install services/login-sync
1093 for p in "${pythonstuff[@]}"
1096 if [[ ${dir} = ${p} ]]; then
1097 if [[ -z ${skip[python2]} ]]; then
1098 do_install ${dir} pip
1100 elif [[ -n ${PYTHON3} ]]; then
1101 if [[ -z ${skip[python3]} ]]; then
1102 do_install ${dir} pip "$VENV3DIR/bin/"
1106 do_install services/api
1107 for g in "${gostuff[@]}"
1111 do_install apps/workbench
1116 do_test services/api
1118 # Shortcut for when we're only running apiserver tests. This saves a bit of time,
1119 # because we don't need to start up the api server for subsequent tests.
1120 if [ ! -z "$only" ] && [ "$only" == "services/api" ]; then
1121 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
1129 do_test services/login-sync
1131 do_test services/nodemanager_integration
1132 for p in "${pythonstuff[@]}"
1135 if [[ ${dir} = ${p} ]]; then
1136 if [[ -z ${skip[python2]} ]]; then
1139 elif [[ -n ${PYTHON3} ]]; then
1140 if [[ -z ${skip[python3]} ]]; then
1141 do_test ${dir} pip "$VENV3DIR/bin/"
1146 for g in "${gostuff[@]}"
1150 do_test apps/workbench_units
1151 do_test apps/workbench_functionals
1152 do_test apps/workbench_integration
1153 do_test apps/workbench_benchmark
1154 do_test apps/workbench_profile
1157 help_interactive() {
1158 echo "== Interactive commands:"
1159 echo "TARGET (short for 'test DIR')"
1161 echo "test TARGET:py3 (test with python3)"
1162 echo "test TARGET -check.vv (pass arguments to test)"
1163 echo "install TARGET"
1164 echo "install env (go/python libs)"
1165 echo "install deps (go/python libs + arvados components needed for integration tests)"
1166 echo "reset (...services used by integration tests)"
1168 echo "== Test targets:"
1169 echo "${!testfuncargs[@]}" | tr ' ' '\n' | sort | column
1174 declare -A testfuncargs=()
1175 for g in "${gostuff[@]}"; do
1176 testfuncargs[$g]="$g go"
1178 for p in "${pythonstuff[@]}"; do
1180 if [[ ${dir} = ${p} ]]; then
1181 testfuncargs[$p]="$dir pip $VENVDIR/bin/"
1183 testfuncargs[$p]="$dir pip $VENV3DIR/bin/"
1187 if [[ -z ${interactive} ]]; then
1194 if [[ -e "$VENVDIR/bin/activate" ]]; then stop_services; fi
1196 if [[ "$nextcmd" != "install deps" ]]; then
1198 elif [[ -e "$VENVDIR/bin/activate" ]]; then
1199 nextcmd="test lib/cmd"
1201 nextcmd="install deps"
1206 nextcmd="install deps"
1208 while read -p 'What next? ' -e -i "${nextcmd}" nextcmd; do
1209 read verb target opts <<<"${nextcmd}"
1221 target="${target%/}"
1222 testargs["$target"]="${opts}"
1228 tt="${testfuncargs[${target}]}"
1235 if [[ ${#successes[@]} -gt 0 || ${#failures[@]} -gt 0 ]]; then