1 /* Simple Arvados Go SDK for communicating with API server. */
21 "git.curoverse.com/arvados.git/sdk/go/arvados"
24 type StringMatcher func(string) bool
26 var UUIDMatch StringMatcher = regexp.MustCompile(`^[a-z0-9]{5}-[a-z0-9]{5}-[a-z0-9]{15}$`).MatchString
27 var PDHMatch StringMatcher = regexp.MustCompile(`^[0-9a-f]{32}\+\d+$`).MatchString
29 var MissingArvadosApiHost = errors.New("Missing required environment variable ARVADOS_API_HOST")
30 var MissingArvadosApiToken = errors.New("Missing required environment variable ARVADOS_API_TOKEN")
31 var ErrInvalidArgument = errors.New("Invalid argument")
33 // A common failure mode is to reuse a keepalive connection that has been
34 // terminated (in a way that we can't detect) for being idle too long.
35 // POST and DELETE are not safe to retry automatically, so we minimize
36 // such failures by always using a new or recently active socket.
37 var MaxIdleConnectionDuration = 30 * time.Second
39 var RetryDelay = 2 * time.Second
41 // Indicates an error that was returned by the API server.
42 type APIServerError struct {
43 // Address of server returning error, of the form "host:port".
46 // Components of server response.
48 HttpStatusMessage string
50 // Additional error details from response body.
54 func (e APIServerError) Error() string {
55 if len(e.ErrorDetails) > 0 {
56 return fmt.Sprintf("arvados API server error: %s (%d: %s) returned by %s",
57 strings.Join(e.ErrorDetails, "; "),
62 return fmt.Sprintf("arvados API server error: %d: %s returned by %s",
69 // Helper type so we don't have to write out 'map[string]interface{}' every time.
70 type Dict map[string]interface{}
72 // Information about how to contact the Arvados server
73 type ArvadosClient struct {
77 // Arvados API server, form "host:port"
80 // Arvados API token for authentication
83 // Whether to require a valid SSL certificate or not
86 // Client object shared by client requests. Supports HTTP KeepAlive.
89 // If true, sets the X-External-Client header to indicate
90 // the client is outside the cluster.
93 // Base URIs of Keep services, e.g., {"https://host1:8443",
94 // "https://host2:8443"}. If this is nil, Keep clients will
95 // use the arvados.v1.keep_services.accessible API to discover
96 // available services.
97 KeepServiceURIs []string
102 lastClosedIdlesAt time.Time
108 var CertFiles = []string{
109 "/etc/arvados/ca-certificates.crt", // Arvados specific
110 "/etc/ssl/certs/ca-certificates.crt", // Debian
111 "/etc/pki/tls/certs/ca-bundle.crt", // Red Hat
114 // SetupRootCAs loads a set of root certificates into TLSClientConfig by
115 // searching a default list of locations.
116 func SetupRootCAs(tlsClientConfig *tls.Config) error {
117 // Container may not have certificates installed, so need to look for
118 // /etc/arvados/ca-certificates.crt in addition to normal system certs.
120 certs := x509.NewCertPool()
121 for _, file := range CertFiles {
122 data, err := ioutil.ReadFile(file)
124 certs.AppendCertsFromPEM(data)
125 tlsClientConfig.RootCAs = certs
130 return fmt.Errorf("Unable to find TLS root certificates to use, tried %v", CertFiles)
133 // New returns an ArvadosClient using the given arvados.Client
134 // configuration. This is useful for callers who load arvados.Client
135 // fields from configuration files but still need to use the
136 // arvadosclient.ArvadosClient package.
137 func New(c *arvados.Client) (*ArvadosClient, error) {
138 tlsconfig := &tls.Config{InsecureSkipVerify: c.Insecure}
139 SetupRootCAs(tlsconfig)
140 ac := &ArvadosClient{
142 ApiServer: c.APIHost,
143 ApiToken: c.AuthToken,
144 ApiInsecure: c.Insecure,
145 Client: &http.Client{Transport: &http.Transport{
146 TLSClientConfig: tlsconfig}},
149 lastClosedIdlesAt: time.Now(),
155 // MakeArvadosClient creates a new ArvadosClient using the standard
156 // environment variables ARVADOS_API_HOST, ARVADOS_API_TOKEN,
157 // ARVADOS_API_HOST_INSECURE, ARVADOS_EXTERNAL_CLIENT, and
158 // ARVADOS_KEEP_SERVICES.
159 func MakeArvadosClient() (ac *ArvadosClient, err error) {
160 var matchTrue = regexp.MustCompile("^(?i:1|yes|true)$")
161 insecure := matchTrue.MatchString(os.Getenv("ARVADOS_API_HOST_INSECURE"))
162 external := matchTrue.MatchString(os.Getenv("ARVADOS_EXTERNAL_CLIENT"))
164 tlsconfig := &tls.Config{InsecureSkipVerify: insecure}
165 SetupRootCAs(tlsconfig)
169 ApiServer: os.Getenv("ARVADOS_API_HOST"),
170 ApiToken: os.Getenv("ARVADOS_API_TOKEN"),
171 ApiInsecure: insecure,
172 Client: &http.Client{Transport: &http.Transport{
173 TLSClientConfig: tlsconfig}},
177 for _, s := range strings.Split(os.Getenv("ARVADOS_KEEP_SERVICES"), " ") {
181 if u, err := url.Parse(s); err != nil {
182 return ac, fmt.Errorf("ARVADOS_KEEP_SERVICES: %q: %s", s, err)
183 } else if !u.IsAbs() {
184 return ac, fmt.Errorf("ARVADOS_KEEP_SERVICES: %q: not an absolute URI", s)
186 ac.KeepServiceURIs = append(ac.KeepServiceURIs, s)
189 if ac.ApiServer == "" {
190 return ac, MissingArvadosApiHost
192 if ac.ApiToken == "" {
193 return ac, MissingArvadosApiToken
196 ac.lastClosedIdlesAt = time.Now()
201 // CallRaw is the same as Call() but returns a Reader that reads the
202 // response body, instead of taking an output object.
203 func (c *ArvadosClient) CallRaw(method string, resourceType string, uuid string, action string, parameters Dict) (reader io.ReadCloser, err error) {
212 if resourceType != API_DISCOVERY_RESOURCE {
213 u.Path = "/arvados/v1"
216 if resourceType != "" {
217 u.Path = u.Path + "/" + resourceType
220 u.Path = u.Path + "/" + uuid
223 u.Path = u.Path + "/" + action
226 if parameters == nil {
227 parameters = make(Dict)
230 vals := make(url.Values)
231 for k, v := range parameters {
232 if s, ok := v.(string); ok {
234 } else if m, err := json.Marshal(v); err == nil {
235 vals.Set(k, string(m))
241 case "GET", "HEAD", "PUT", "OPTIONS", "DELETE":
245 // Non-retryable methods such as POST are not safe to retry automatically,
246 // so we minimize such failures by always using a new or recently active socket
248 if time.Since(c.lastClosedIdlesAt) > MaxIdleConnectionDuration {
249 c.lastClosedIdlesAt = time.Now()
250 c.Client.Transport.(*http.Transport).CloseIdleConnections()
255 var req *http.Request
256 var resp *http.Response
258 for attempt := 0; attempt <= c.Retries; attempt++ {
259 if method == "GET" || method == "HEAD" {
260 u.RawQuery = vals.Encode()
261 if req, err = http.NewRequest(method, u.String(), nil); err != nil {
265 if req, err = http.NewRequest(method, u.String(), bytes.NewBufferString(vals.Encode())); err != nil {
268 req.Header.Add("Content-Type", "application/x-www-form-urlencoded")
271 // Add api token header
272 req.Header.Add("Authorization", fmt.Sprintf("OAuth2 %s", c.ApiToken))
274 req.Header.Add("X-External-Client", "1")
277 resp, err = c.Client.Do(req)
280 time.Sleep(RetryDelay)
287 if resp.StatusCode == http.StatusOK {
288 return resp.Body, nil
291 defer resp.Body.Close()
293 switch resp.StatusCode {
294 case 408, 409, 422, 423, 500, 502, 503, 504:
295 time.Sleep(RetryDelay)
298 return nil, newAPIServerError(c.ApiServer, resp)
303 return nil, newAPIServerError(c.ApiServer, resp)
308 func newAPIServerError(ServerAddress string, resp *http.Response) APIServerError {
310 ase := APIServerError{
311 ServerAddress: ServerAddress,
312 HttpStatusCode: resp.StatusCode,
313 HttpStatusMessage: resp.Status}
315 // If the response body has {"errors":["reason1","reason2"]}
316 // then return those reasons.
318 if err := json.NewDecoder(resp.Body).Decode(&errInfo); err == nil {
319 if errorList, ok := errInfo["errors"]; ok {
320 if errArray, ok := errorList.([]interface{}); ok {
321 for _, errItem := range errArray {
322 // We expect an array of strings here.
323 // Non-strings will be passed along
325 if s, ok := errItem.(string); ok {
326 ase.ErrorDetails = append(ase.ErrorDetails, s)
327 } else if j, err := json.Marshal(errItem); err == nil {
328 ase.ErrorDetails = append(ase.ErrorDetails, string(j))
337 // Call an API endpoint and parse the JSON response into an object.
339 // method - HTTP method: GET, HEAD, PUT, POST, PATCH or DELETE.
340 // resourceType - the type of arvados resource to act on (e.g., "collections", "pipeline_instances").
341 // uuid - the uuid of the specific item to access. May be empty.
342 // action - API method name (e.g., "lock"). This is often empty if implied by method and uuid.
343 // parameters - method parameters.
344 // output - a map or annotated struct which is a legal target for encoding/json/Decoder.
346 // Returns a non-nil error if an error occurs making the API call, the
347 // API responds with a non-successful HTTP status, or an error occurs
348 // parsing the response body.
349 func (c *ArvadosClient) Call(method, resourceType, uuid, action string, parameters Dict, output interface{}) error {
350 reader, err := c.CallRaw(method, resourceType, uuid, action, parameters)
359 dec := json.NewDecoder(reader)
360 if err = dec.Decode(output); err != nil {
367 // Create a new resource. See Call for argument descriptions.
368 func (c *ArvadosClient) Create(resourceType string, parameters Dict, output interface{}) error {
369 return c.Call("POST", resourceType, "", "", parameters, output)
372 // Delete a resource. See Call for argument descriptions.
373 func (c *ArvadosClient) Delete(resource string, uuid string, parameters Dict, output interface{}) (err error) {
374 return c.Call("DELETE", resource, uuid, "", parameters, output)
377 // Modify attributes of a resource. See Call for argument descriptions.
378 func (c *ArvadosClient) Update(resourceType string, uuid string, parameters Dict, output interface{}) (err error) {
379 return c.Call("PUT", resourceType, uuid, "", parameters, output)
382 // Get a resource. See Call for argument descriptions.
383 func (c *ArvadosClient) Get(resourceType string, uuid string, parameters Dict, output interface{}) (err error) {
384 if !UUIDMatch(uuid) && !(resourceType == "collections" && PDHMatch(uuid)) {
385 // No object has uuid == "": there is no need to make
386 // an API call. Furthermore, the HTTP request for such
387 // an API call would be "GET /arvados/v1/type/", which
388 // is liable to be misinterpreted as the List API.
389 return ErrInvalidArgument
391 return c.Call("GET", resourceType, uuid, "", parameters, output)
394 // List resources of a given type. See Call for argument descriptions.
395 func (c *ArvadosClient) List(resource string, parameters Dict, output interface{}) (err error) {
396 return c.Call("GET", resource, "", "", parameters, output)
399 const API_DISCOVERY_RESOURCE = "discovery/v1/apis/arvados/v1/rest"
401 // Discovery returns the value of the given parameter in the discovery
402 // document. Returns a non-nil error if the discovery document cannot
403 // be retrieved/decoded. Returns ErrInvalidArgument if the requested
404 // parameter is not found in the discovery document.
405 func (c *ArvadosClient) Discovery(parameter string) (value interface{}, err error) {
406 if len(c.DiscoveryDoc) == 0 {
407 c.DiscoveryDoc = make(Dict)
408 err = c.Call("GET", API_DISCOVERY_RESOURCE, "", "", nil, &c.DiscoveryDoc)
415 value, found = c.DiscoveryDoc[parameter]
419 return value, ErrInvalidArgument