doc/user/cwl/federated/federated.cwl

   1 cwlVersion: v1.0
   2 class: Workflow
   3 $namespaces:
   4   arv: "http://arvados.org/cwl#"
   5 requirements:
   6   InlineJavascriptRequirement: {}
   7   DockerRequirement:
   8     dockerPull: arvados/fed-test:scatter-gather
   9   ScatterFeatureRequirement: {}
  10   StepInputExpressionRequirement: {}
  11   SchemaDefRequirement:
  12     types:
  13       - name: FileOnCluster
  14         type: record
  15         fields:
  16           file: File
  17           cluster: string
  18 inputs:
  19   shards:
  20     type:
  21       type: array
  22       items: FileOnCluster
  23 outputs:
  24   joined:
  25     type: File
  26     outputSource: gather-results/joined
  27 steps:
  28   distributed-analysis:
  29     in:
  30       shards: shards
  31       inp: {valueFrom: $(inputs.shards.file)}
  32     scatter: shards
  33     hints:
  34       arv:ClusterTarget:
  35         cluster_id: $(inputs.shards.cluster)
  36         project_uuid: $(inputs.shards.project)
  37     out: [out]
  38     run: md5sum.cwl
  39   gather-results:
  40     in:
  41       inp: distributed-analysis/out
  42     out: [joined]
  43     run: cat.cwl