apps/workbench/app/controllers/work_units_controller.rb

   1 class WorkUnitsController < ApplicationController
   2   def find_objects_for_index
   3     # If it's not the index rows partial display, just return
   4     # The /index request will again be invoked to display the
   5     # partial at which time, we will be using the objects found.
   6     return if !params[:partial]
   7
   8     @limit = 20
   9     @filters = @filters || []
  10
  11     # get next page of pipeline_instances
  12     filters = @filters + [["uuid", "is_a", ["arvados#pipelineInstance"]]]
  13     pipelines = PipelineInstance.limit(@limit).order(["created_at desc"]).filter(filters)
  14
  15     # get next page of jobs
  16     filters = @filters + [["uuid", "is_a", ["arvados#job"]]]
  17     jobs = Job.limit(@limit).order(["created_at desc"]).filter(filters)
  18
  19     # get next page of container_requests
  20     filters = @filters + [["uuid", "is_a", ["arvados#containerRequest"]]]
  21     crs = ContainerRequest.limit(@limit).order(["created_at desc"]).filter(filters)
  22     @objects = (jobs.to_a + pipelines.to_a + crs.to_a).sort_by(&:created_at).reverse.first(@limit)
  23
  24     if @objects.any?
  25       @next_page_filters = next_page_filters('<=')
  26       @next_page_href = url_for(partial: :all_processes_rows,
  27                                 filters: @next_page_filters.to_json)
  28       preload_links_for_objects(@objects.to_a)
  29     else
  30       @next_page_href = nil
  31     end
  32   end
  33
  34   def next_page_href with_params={}
  35     @next_page_href
  36   end
  37
  38   def create
  39     template_uuid = params['work_unit']['template_uuid']
  40
  41     attrs = {}
  42     rc = resource_class_for_uuid(template_uuid)
  43     if rc == PipelineTemplate
  44       model_class = PipelineInstance
  45       attrs['pipeline_template_uuid'] = template_uuid
  46     elsif rc == Workflow
  47       # workflow json
  48       workflow = Workflow.find? template_uuid
  49       if workflow.workflow
  50         begin
  51           wf_json = JSON.parse(JSON.dump(YAML::load(workflow.workflow)))
  52         rescue => e
  53           logger.error "Error converting workflow yaml to json: #{e.message}"
  54           raise ArgumentError, "Error converting workflow yaml to json: #{e.message}"
  55         end
  56       end
  57
  58       model_class = ContainerRequest
  59
  60       attrs['properties'] = {'template_uuid' => template_uuid}
  61       attrs['priority'] = 1
  62       attrs['state'] = "Uncommitted"
  63
  64       # required
  65       attrs['command'] = ["arvados-cwl-runner", "--local", "--api=containers", "/var/lib/cwl/workflow.json", "/var/lib/cwl/cwl.input.json"]
  66       attrs['container_image'] = "arvados/jobs"
  67       attrs['cwd'] = "/var/spool/cwl"
  68       attrs['output_path'] = "/var/spool/cwl"
  69
  70       # mounts
  71       mounts = {
  72         "/var/lib/cwl/cwl.input.json" => {
  73           "kind" => "json",
  74           "content" => {}
  75         },
  76         "stdout" => {
  77           "kind" => "file",
  78           "path" => "/var/spool/cwl/cwl.output.json"
  79         },
  80         "/var/spool/cwl" => {
  81           "kind" => "collection",
  82           "writable" => true
  83         }
  84       }
  85       if wf_json
  86         mounts["/var/lib/cwl/workflow.json"] = {
  87           "kind" => "json",
  88           "content" => wf_json
  89         }
  90       end
  91       attrs['mounts'] = mounts
  92
  93       # runtime constriants
  94       runtime_constraints = {
  95         "vcpus" => 1,
  96         "ram" => 256000000,
  97         "API" => true
  98       }
  99       attrs['runtime_constraints'] = runtime_constraints
 100     else
 101       raise ArgumentError, "Unsupported template uuid: #{template_uuid}"
 102     end
 103
 104     attrs['owner_uuid'] = params['work_unit']['owner_uuid']
 105     @object ||= model_class.new attrs
 106
 107     if @object.save
 108       redirect_to @object
 109     else
 110       render_error status: 422
 111     end
 112   end
 113 end