crunch_scripts/file-select

   1 #!/usr/bin/env python
   2
   3 import arvados
   4 import os
   5 import re
   6
   7 this_job = arvados.current_job()
   8 this_task = arvados.current_task()
   9 this_job_input = this_job['script_parameters']['input']
  10 manifest_text = ""
  11 for f in arvados.CollectionReader(this_job_input).all_files():
  12     if f.name() in this_job['script_parameters']['names']:
  13         manifest_text += f.as_manifest()
  14
  15 this_task.set_output(arvados.Keep.put(manifest_text))