src/index.tsx

   1 // Copyright (C) The Arvados Authors. All rights reserved.
   2 //
   3 // SPDX-License-Identifier: AGPL-3.0
   4
   5 import * as React from 'react';
   6 import * as ReactDOM from 'react-dom';
   7 import { Provider } from "react-redux";
   8 import { MainPanel } from '~/views/main-panel/main-panel';
   9 import '~/index.css';
  10 import { Route, Switch } from 'react-router';
  11 import createBrowserHistory from "history/createBrowserHistory";
  12 import { History } from "history";
  13 import { configureStore, RootStore } from '~/store/store';
  14 import { ConnectedRouter } from "react-router-redux";
  15 import { ApiToken } from "~/views-components/api-token/api-token";
  16 import { initAuth } from "~/store/auth/auth-action";
  17 import { createServices } from "~/services/services";
  18 import { MuiThemeProvider } from '@material-ui/core/styles';
  19 import { CustomTheme } from '~/common/custom-theme';
  20 import { fetchConfig } from '~/common/config';
  21 import { addMenuActionSet, ContextMenuKind } from '~/views-components/context-menu/context-menu';
  22 import { rootProjectActionSet } from "~/views-components/context-menu/action-sets/root-project-action-set";
  23 import { projectActionSet } from "~/views-components/context-menu/action-sets/project-action-set";
  24 import { resourceActionSet } from '~/views-components/context-menu/action-sets/resource-action-set';
  25 import { favoriteActionSet } from "~/views-components/context-menu/action-sets/favorite-action-set";
  26 import { collectionFilesActionSet } from '~/views-components/context-menu/action-sets/collection-files-action-set';
  27 import { collectionFilesItemActionSet } from '~/views-components/context-menu/action-sets/collection-files-item-action-set';
  28 import { collectionFilesNotSelectedActionSet } from '~/views-components/context-menu/action-sets/collection-files-not-selected-action-set';
  29 import { collectionActionSet } from '~/views-components/context-menu/action-sets/collection-action-set';
  30 import { collectionResourceActionSet } from '~/views-components/context-menu/action-sets/collection-resource-action-set';
  31 import { processActionSet } from '~/views-components/context-menu/action-sets/process-action-set';
  32 import { loadWorkbench } from '~/store/workbench/workbench-actions';
  33 import { Routes } from '~/routes/routes';
  34 import { trashActionSet } from "~/views-components/context-menu/action-sets/trash-action-set";
  35 import { ServiceRepository } from '~/services/services';
  36 import { initWebSocket } from '~/websocket/websocket';
  37 import { Config } from '~/common/config';
  38 import { addRouteChangeHandlers } from './routes/route-change-handlers';
  39 import { setCurrentTokenDialogApiHost } from '~/store/current-token-dialog/current-token-dialog-actions';
  40 import { processResourceActionSet } from '~/views-components/context-menu/action-sets/process-resource-action-set';
  41 import { progressIndicatorActions } from '~/store/progress-indicator/progress-indicator-actions';
  42 import { trashedCollectionActionSet } from '~/views-components/context-menu/action-sets/trashed-collection-action-set';
  43 import { ContainerRequestState } from '~/models/container-request';
  44 import { MountKind } from '~/models/mount-types';
  45 import { setBuildInfo } from '~/store/app-info/app-info-actions';
  46 import { getBuildInfo } from '~/common/app-info';
  47 import { DragDropContextProvider } from 'react-dnd';
  48 import HTML5Backend from 'react-dnd-html5-backend';
  49 import { initAdvanceFormProjectsTree } from '~/store/search-bar/search-bar-actions';
  50 import { repositoryActionSet } from '~/views-components/context-menu/action-sets/repository-action-set';
  51 import { sshKeyActionSet } from '~/views-components/context-menu/action-sets/ssh-key-action-set';
  52 import { keepServiceActionSet } from '~/views-components/context-menu/action-sets/keep-service-action-set';
  53 import { loadVocabulary } from '~/store/vocabulary/vocabulary-actions';
  54 import { virtualMachineActionSet } from '~/views-components/context-menu/action-sets/virtual-machine-action-set';
  55 import { userActionSet } from '~/views-components/context-menu/action-sets/user-action-set';
  56 import { computeNodeActionSet } from '~/views-components/context-menu/action-sets/compute-node-action-set';
  57 import { apiClientAuthorizationActionSet } from '~/views-components/context-menu/action-sets/api-client-authorization-action-set';
  58 import { groupActionSet } from '~/views-components/context-menu/action-sets/group-action-set';
  59 import { groupMemberActionSet } from '~/views-components/context-menu/action-sets/group-member-action-set';
  60 import { linkActionSet } from '~/views-components/context-menu/action-sets/link-action-set';
  61 import { loadFileViewersConfig } from '~/store/file-viewers/file-viewers-actions';
  62 import { collectionAdminActionSet } from '~/views-components/context-menu/action-sets/collection-admin-action-set';
  63 import { processResourceAdminActionSet } from '~/views-components/context-menu/action-sets/process-resource-admin-action-set';
  64 import { projectAdminActionSet } from '~/views-components/context-menu/action-sets/project-admin-action-set';
  65
  66 console.log(`Starting arvados [${getBuildInfo()}]`);
  67
  68 addMenuActionSet(ContextMenuKind.ROOT_PROJECT, rootProjectActionSet);
  69 addMenuActionSet(ContextMenuKind.PROJECT, projectActionSet);
  70 addMenuActionSet(ContextMenuKind.RESOURCE, resourceActionSet);
  71 addMenuActionSet(ContextMenuKind.FAVORITE, favoriteActionSet);
  72 addMenuActionSet(ContextMenuKind.COLLECTION_FILES, collectionFilesActionSet);
  73 addMenuActionSet(ContextMenuKind.COLLECTION_FILES_NOT_SELECTED, collectionFilesNotSelectedActionSet);
  74 addMenuActionSet(ContextMenuKind.COLLECTION_FILES_ITEM, collectionFilesItemActionSet);
  75 addMenuActionSet(ContextMenuKind.COLLECTION, collectionActionSet);
  76 addMenuActionSet(ContextMenuKind.COLLECTION_RESOURCE, collectionResourceActionSet);
  77 addMenuActionSet(ContextMenuKind.TRASHED_COLLECTION, trashedCollectionActionSet);
  78 addMenuActionSet(ContextMenuKind.PROCESS, processActionSet);
  79 addMenuActionSet(ContextMenuKind.PROCESS_RESOURCE, processResourceActionSet);
  80 addMenuActionSet(ContextMenuKind.TRASH, trashActionSet);
  81 addMenuActionSet(ContextMenuKind.REPOSITORY, repositoryActionSet);
  82 addMenuActionSet(ContextMenuKind.SSH_KEY, sshKeyActionSet);
  83 addMenuActionSet(ContextMenuKind.VIRTUAL_MACHINE, virtualMachineActionSet);
  84 addMenuActionSet(ContextMenuKind.KEEP_SERVICE, keepServiceActionSet);
  85 addMenuActionSet(ContextMenuKind.USER, userActionSet);
  86 addMenuActionSet(ContextMenuKind.LINK, linkActionSet);
  87 addMenuActionSet(ContextMenuKind.NODE, computeNodeActionSet);
  88 addMenuActionSet(ContextMenuKind.API_CLIENT_AUTHORIZATION, apiClientAuthorizationActionSet);
  89 addMenuActionSet(ContextMenuKind.GROUPS, groupActionSet);
  90 addMenuActionSet(ContextMenuKind.GROUP_MEMBER, groupMemberActionSet);
  91 addMenuActionSet(ContextMenuKind.COLLECTION_ADMIN, collectionAdminActionSet);
  92 addMenuActionSet(ContextMenuKind.PROCESS_ADMIN, processResourceAdminActionSet);
  93 addMenuActionSet(ContextMenuKind.PROJECT_ADMIN, projectAdminActionSet);
  94
  95 fetchConfig()
  96     .then(({ config, apiHost }) => {
  97         const history = createBrowserHistory();
  98         const services = createServices(config, {
  99             progressFn: (id, working) => {
 100                 store.dispatch(progressIndicatorActions.TOGGLE_WORKING({ id, working }));
 101             },
 102             errorFn: (id, error) => {
 103                 // console.error("Backend error:", error);
 104                 // store.dispatch(snackbarActions.OPEN_SNACKBAR({ message: "Backend error", kind: SnackbarKind.ERROR }));
 105             }
 106         });
 107         const store = configureStore(history, services);
 108
 109         store.subscribe(initListener(history, store, services, config));
 110         store.dispatch(initAuth(config));
 111         store.dispatch(setBuildInfo());
 112         store.dispatch(setCurrentTokenDialogApiHost(apiHost));
 113         store.dispatch(loadVocabulary);
 114         store.dispatch(loadFileViewersConfig);
 115
 116         const TokenComponent = (props: any) => <ApiToken authService={services.authService} config={config} loadMainApp={true} {...props} />;
 117         const FedTokenComponent = (props: any) => <ApiToken authService={services.authService} config={config} loadMainApp={false} {...props} />;
 118         const MainPanelComponent = (props: any) => <MainPanel {...props} />;
 119
 120         const App = () =>
 121             <MuiThemeProvider theme={CustomTheme}>
 122                 <DragDropContextProvider backend={HTML5Backend}>
 123                     <Provider store={store}>
 124                         <ConnectedRouter history={history}>
 125                             <Switch>
 126                                 <Route path={Routes.TOKEN} component={TokenComponent} />
 127                                 <Route path={Routes.FED_LOGIN} component={FedTokenComponent} />
 128                                 <Route path={Routes.ROOT} component={MainPanelComponent} />
 129                             </Switch>
 130                         </ConnectedRouter>
 131                     </Provider>
 132                 </DragDropContextProvider>
 133             </MuiThemeProvider>;
 134
 135         ReactDOM.render(
 136             <App />,
 137             document.getElementById('root') as HTMLElement
 138         );
 139     });
 140
 141 const initListener = (history: History, store: RootStore, services: ServiceRepository, config: Config) => {
 142     let initialized = false;
 143     return async () => {
 144         const { router, auth } = store.getState();
 145         if (router.location && auth.user && !initialized) {
 146             initialized = true;
 147             initWebSocket(config, services.authService, store);
 148             await store.dispatch(loadWorkbench());
 149             addRouteChangeHandlers(history, store);
 150             // ToDo: move to searchBar component
 151             store.dispatch(initAdvanceFormProjectsTree());
 152         }
 153     };
 154 };
 155
 156 const createDirectoriesArrayCollectorWorkflow = ({ workflowService }: ServiceRepository) => {
 157     workflowService.create({
 158         name: 'Directories array collector',
 159         description: 'Workflow for collecting directories array',
 160         definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n\n  requirements:\n  - listing:\n    - entryname: input_collector.log\n      entry: |\n        \"multiple_collections\":\n          $(inputs.multiple_collections)\n\n    class: InitialWorkDirRequirement\n  inputs:\n  - type:\n      type: array\n      items: Directory\n    id: '#input_collector.cwl/multiple_collections'\n  outputs:\n  - type: File\n    outputBinding:\n      glob: '*'\n    id: '#input_collector.cwl/output'\n\n  baseCommand: [echo]\n  id: '#input_collector.cwl'\n- class: Workflow\n  doc: This is the description of the workflow\n  inputs:\n  - type:\n      type: array\n      items: Directory\n    label: Multiple Collections\n    doc: This should allow for selecting multiple collections.\n    id: '#main/multiple_collections'\n    default:\n    - class: Directory\n      location: keep:1e1682585d576f031b2d8b4944f989ee+57\n      basename: 1e1682585d576f031b2d8b4944f989ee+57\n    - class: Directory\n      location: keep:326f692370e9e121fcbd013796f7352a+57\n      basename: 326f692370e9e121fcbd013796f7352a+57\n  \n  outputs:\n  - type: File\n    outputSource: '#main/input_collector/output'\n\n    id: '#main/log_file'\n  steps:\n  - run: '#input_collector.cwl'\n    in:\n    - source: '#main/multiple_collections'\n      id: '#main/input_collector/multiple_collections'\n    out: ['#main/input_collector/output']\n    id: '#main/input_collector'\n  id: '#main'\n",
 161     });
 162 };
 163
 164 const createPrimitiveArraysCollectorWorkflow = ({ workflowService }: ServiceRepository) => {
 165     workflowService.create({
 166         name: 'String, Int and Float arrays collector',
 167         description: 'Workflow for collecting primitive data arrays',
 168         definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n\n  requirements:\n  - listing:\n    - entryname: input_collector.log\n      entry: |\n        \"string array\":\n          $(inputs.example_string_array)\n        \"int array\":\n          $(inputs.example_int_array)\n        \"float array\":\n          $(inputs.example_float_array)\n\n    class: InitialWorkDirRequirement\n  inputs:\n  - type:\n      type: array\n      items: string\n    id: '#input_collector.cwl/example_string_array'\n  - type:\n      type: array\n      items: int\n    id: '#input_collector.cwl/example_int_array'\n  - type:\n      type: array\n      items: float\n    id: '#input_collector.cwl/example_float_array'\n  \n  outputs:\n  - type: File\n    outputBinding:\n      glob: '*'\n    id: '#input_collector.cwl/output'\n\n  baseCommand: [echo]\n  id: '#input_collector.cwl'\n- class: Workflow\n  doc: This is the description of the workflow\n  inputs:\n  - type:\n      type: array\n      items: string\n    label: Freetext Array\n    doc: This should allow for entering multiple strings.\n    id: '#main/example_string_array'\n    default:\n    - This is the first string\n    - This is the second string\n  - type:\n      type: array\n      items: int\n    label: Integer Array\n    doc: This should allow for entering multiple integers.\n    id: '#main/example_int_array'\n    default:\n    - 3\n    - 6\n  - type:\n      type: array\n      items: float\n    label: Float Array\n    doc: This should allow for entering multiple floats.\n    id: '#main/example_float_array'\n    default:\n    - 3.33\n    - 66.6\n\n  outputs:\n  - type: File\n    outputSource: '#main/input_collector/output'\n\n    id: '#main/log_file'\n  steps:\n  - run: '#input_collector.cwl'\n    in:\n    - source: '#main/example_string_array'\n      id: '#main/input_collector/example_string_array'\n    - source: '#main/example_int_array'\n      id: '#main/input_collector/example_int_array'\n    - source: '#main/example_float_array'\n      id: '#main/input_collector/example_float_array'\n    out: ['#main/input_collector/output']\n    id: '#main/input_collector'\n  id: '#main'\n",
 169     });
 170 };
 171
 172 const createFilesArrayCollectorWorkflow = ({ workflowService }: ServiceRepository) => {
 173     workflowService.create({
 174         name: 'Files array collector',
 175         description: 'Workflow for collecting files array',
 176         definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n\n  requirements:\n  - listing:\n    - entryname: input_collector.log\n      entry: |\n        \"multiple_files\":\n          $(inputs.multiple_files)\n\n    class: InitialWorkDirRequirement\n  inputs:\n  - type:\n      type: array\n      items: File\n    id: '#input_collector.cwl/multiple_files'\n  outputs:\n  - type: File\n    outputBinding:\n      glob: '*'\n    id: '#input_collector.cwl/output'\n\n  baseCommand: [cat]\n  id: '#input_collector.cwl'\n- class: Workflow\n  doc: This is the description of the workflow\n  inputs:\n  - type:\n      type: array\n      items: File\n    label: Multiple Files\n    doc: This should allow for selecting multiple files.\n    id: '#main/multiple_files'\n    default:\n      - class: File\n        location: keep:af831660d820bcbb98f473355e6e1b85+67/fileA\n        basename: fileA\n        nameroot: fileA\n        nameext: ''\n  outputs:\n  - type: File\n    outputSource: '#main/input_collector/output'\n\n    id: '#main/log_file'\n  steps:\n  - run: '#input_collector.cwl'\n    in:\n    - source: '#main/multiple_files'\n      id: '#main/input_collector/multiple_files'\n    out: ['#main/input_collector/output']\n    id: '#main/input_collector'\n  id: '#main'\n",
 177     });
 178 };
 179
 180 const createPrimitivesCollectorWorkflow = ({ workflowService }: ServiceRepository) => {
 181     workflowService.create({
 182         name: 'Primitive values collector',
 183         description: 'Workflow for collecting primitive values',
 184         definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n  requirements:\n  - listing:\n    - entryname: input_collector.log\n      entry: |\n        \"flag\":\n          $(inputs.example_flag)\n        \"string\":\n          $(inputs.example_string)\n        \"int\":\n          $(inputs.example_int)\n        \"long\":\n          $(inputs.example_long)\n        \"float\":\n          $(inputs.example_float)\n        \"double\":\n          $(inputs.example_double)\n    class: InitialWorkDirRequirement\n  inputs:\n  - type: double\n    id: '#input_collector.cwl/example_double'\n  - type: boolean\n    id: '#input_collector.cwl/example_flag'\n  - type: float\n    id: '#input_collector.cwl/example_float'\n  - type: int\n    id: '#input_collector.cwl/example_int'\n  - type: long\n    id: '#input_collector.cwl/example_long'\n  - type: string\n    id: '#input_collector.cwl/example_string'\n  outputs:\n  - type: File\n    outputBinding:\n      glob: '*'\n    id: '#input_collector.cwl/output'\n  baseCommand: [echo]\n  id: '#input_collector.cwl'\n- class: Workflow\n  doc: Workflw for collecting primitive values\n  inputs:\n  - type: double\n    label: Double value\n    doc: This should allow for entering a decimal number (64-bit).\n    id: '#main/example_double'\n    default: 0.3333333333333333\n  - type: boolean\n    label: Boolean Flag\n    doc: This should render as in checkbox.\n    id: '#main/example_flag'\n    default: true\n  - type: float\n    label: Float value\n    doc: This should allow for entering a decimal number (32-bit).\n    id: '#main/example_float'\n    default: 0.15625\n  - type: int\n    label: Integer Number\n    doc: This should allow for entering a number (32-bit signed).\n    id: '#main/example_int'\n    default: 2147483647\n  - type: long\n    label: Long Number\n    doc: This should allow for entering a number (64-bit signed).\n    id: '#main/example_long'\n    default: 9223372036854775807\n  - type: string\n    label: Freetext\n    doc: This should allow for entering an arbitrary char sequence.\n    id: '#main/example_string'\n    default: This is a string\n  outputs:\n  - type: File\n    outputSource: '#main/input_collector/output'\n    id: '#main/log_file'\n  steps:\n  - run: '#input_collector.cwl'\n    in:\n    - source: '#main/example_double'\n      id: '#main/input_collector/example_double'\n    - source: '#main/example_flag'\n      id: '#main/input_collector/example_flag'\n    - source: '#main/example_float'\n      id: '#main/input_collector/example_float'\n    - source: '#main/example_int'\n      id: '#main/input_collector/example_int'\n    - source: '#main/example_long'\n      id: '#main/input_collector/example_long'\n    - source: '#main/example_string'\n      id: '#main/input_collector/example_string'\n    out: ['#main/input_collector/output']\n    id: '#main/input_collector'\n  id: '#main'\n",
 185     });
 186 };
 187
 188 const createEnumCollectorWorkflow = ({ workflowService }: ServiceRepository) => {
 189     workflowService.create({
 190         name: 'Enum values collector',
 191         description: 'Workflow for collecting enum values',
 192         definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n  requirements:\n  - listing:\n    - entryname: input_collector.log\n      entry: |\n        \"enum_type\":\n          $(inputs.enum_type)\n\n    class: InitialWorkDirRequirement\n  inputs:\n  - type:\n      type: enum\n      symbols: ['#input_collector.cwl/enum_type/OTU table', '#input_collector.cwl/enum_type/Pathway\n          table', '#input_collector.cwl/enum_type/Function table', '#input_collector.cwl/enum_type/Ortholog\n          table']\n    id: '#input_collector.cwl/enum_type'\n  outputs:\n  - type: File\n    outputBinding:\n      glob: '*'\n    id: '#input_collector.cwl/output'\n  baseCommand: [echo]\n  id: '#input_collector.cwl'\n- class: Workflow\n  doc: This is the description of the workflow\n  inputs:\n  - type:\n      type: enum\n      symbols: ['#main/enum_type/OTU table', '#main/enum_type/Pathway table', '#main/enum_type/Function\n          table', '#main/enum_type/Ortholog table']\n      name: '#enum_typef4179c7f-45f9-482d-a5db-1abb86698384'\n    label: Enumeration Type\n    doc: This should render as a drop-down menu.\n    id: '#main/enum_type'\n    default: OTU table\n  outputs:\n  - type: File\n    outputSource: '#main/input_collector/output'\n    id: '#main/log_file'\n  steps:\n  - run: '#input_collector.cwl'\n    in:\n    - source: '#main/enum_type'\n      id: '#main/input_collector/enum_type'\n    out: ['#main/input_collector/output']\n    id: '#main/input_collector'\n  id: '#main'\n",
 193     });
 194 };
 195
 196 const createFilesCollectorWorkflow = ({ workflowService }: ServiceRepository) => {
 197     workflowService.create({
 198         name: 'File values collector',
 199         description: 'Workflow for collecting file values',
 200         definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n\n  requirements:\n  - listing:\n    - entryname: input_collector.log\n      entry: |\n        \"single_file\":\n          $(inputs.single_file.basename)\n        \"optional_file\":\n          $(inputs.optional_file.basename)\n\n    class: InitialWorkDirRequirement\n  inputs:\n  - type:\n    - 'null'\n    - File\n    id: '#input_collector.cwl/optional_file'\n  - type:\n    - 'null'\n    - File\n    id: '#input_collector.cwl/optional_file_missing_label'\n  - type: File\n    id: '#input_collector.cwl/single_file'\n  outputs:\n  - type: File\n    outputBinding:\n      glob: '*'\n    id: '#input_collector.cwl/output'\n\n  baseCommand: [echo]\n  id: '#input_collector.cwl'\n- class: Workflow\n  doc: This is the description of the workflow\n  inputs:\n  - type:\n    - 'null'\n    - File\n    label: Single File (Optional)\n    doc: This should allow for single File selection only. Input should be marked\n      as optional and not enforced by form validation.\n    id: '#main/optional_file'\n    default:\n      class: File\n      location: keep:af831660d820bcbb98f473355e6e1b85+67/fileA\n      basename: fileA\n      nameroot: fileA\n      nameext: ''\n  - type:\n    - 'null'\n    - File\n    doc: Label should be the input field name because of missing label.\n    id: '#main/optional_file_missing_label'\n  - type: File\n    label: Single File\n    doc: This should allow for single File selection only.\n    id: '#main/single_file'\n    default:\n      class: File\n      location: keep:af831660d820bcbb98f473355e6e1b85+67/fileA\n      basename: fileA\n      nameroot: fileA\n      nameext: ''\n  outputs:\n  - type: File\n    outputSource: '#main/input_collector/output'\n    id: '#main/log_file'\n  steps:\n  - run: '#input_collector.cwl'\n    in:\n    - source: '#main/optional_file'\n      id: '#main/input_collector/optional_file'\n    - source: '#main/single_file'\n      id: '#main/input_collector/single_file'\n    out: ['#main/input_collector/output']\n    id: '#main/input_collector'\n  id: '#main'\n",
 201     });
 202 };
 203
 204 const createCollectionCollectorWorkflow = ({ workflowService }: ServiceRepository) => {
 205     workflowService.create({
 206         name: 'Collection value collector',
 207         description: 'Workflow for collecting a collecion',
 208         definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n\n  requirements:\n  - listing:\n    - entryname: input_collector.log\n      entry: |\n        \"collection\":\n          $(inputs.collection.location)\n\n    class: InitialWorkDirRequirement\n  inputs:\n  - type: Directory\n    id: '#input_collector.cwl/collection'\n\n  outputs:\n  - type: File\n    outputBinding:\n      glob: '*'\n    id: '#input_collector.cwl/output'\n\n  baseCommand: [echo]\n  id: '#input_collector.cwl'\n- class: Workflow\n  doc: This is the description of the workflow\n  inputs:\n  - type: Directory\n    label: Single Collection\n    doc: This should allow for single Collection selection only.\n    id: '#main/collection'\n    default:\n      class: Directory\n      location: keep:af831660d820bcbb98f473355e6e1b85+67\n      basename: af831660d820bcbb98f473355e6e1b85+67\n  outputs:\n  - type: File\n    outputSource: '#main/input_collector/output'\n\n    id: '#main/log_file'\n  steps:\n  - run: '#input_collector.cwl'\n    in:\n    - source: '#main/collection'\n      id: '#main/input_collector/collection'\n    out: ['#main/input_collector/output']\n    id: '#main/input_collector'\n  id: '#main'\n",
 209     });
 210 };
 211
 212 const createSampleProcess = ({ containerRequestService }: ServiceRepository) => {
 213     containerRequestService.create({
 214         ownerUuid: 'c97qk-j7d0g-s3ngc1z0748hsmf',
 215         name: 'Simple process 7',
 216         state: ContainerRequestState.COMMITTED,
 217         mounts: {
 218             '/var/spool/cwl': {
 219                 kind: MountKind.COLLECTION,
 220                 writable: true,
 221             },
 222             'stdout': {
 223                 kind: MountKind.MOUNTED_FILE,
 224                 path: '/var/spool/cwl/cwl.output.json'
 225             },
 226             '/var/lib/cwl/workflow.json': {
 227                 kind: MountKind.JSON,
 228                 content: {
 229                     "cwlVersion": "v1.0",
 230                     "$graph": [
 231                         {
 232                             "class": "CommandLineTool",
 233                             "requirements": [
 234                                 {
 235                                     "listing": [
 236                                         {
 237                                             "entryname": "input_collector.log",
 238                                             "entry": "$(inputs.single_file.basename)\n"
 239                                         }
 240                                     ],
 241                                     "class": "InitialWorkDirRequirement"
 242                                 }
 243                             ],
 244                             "inputs": [
 245                                 {
 246                                     "type": "File",
 247                                     "id": "#input_collector.cwl/single_file"
 248                                 }
 249                             ],
 250                             "outputs": [
 251                                 {
 252                                     "type": "File",
 253                                     "outputBinding": {
 254                                         "glob": "*"
 255                                     },
 256                                     "id": "#input_collector.cwl/output"
 257                                 }
 258                             ],
 259                             "baseCommand": [
 260                                 "echo"
 261                             ],
 262                             "id": "#input_collector.cwl"
 263                         },
 264                         {
 265                             "class": "Workflow",
 266                             "doc": "This is the description of the workflow",
 267                             "inputs": [
 268                                 {
 269                                     "type": "File",
 270                                     "label": "Single File",
 271                                     "doc": "This should allow for single File selection only.",
 272                                     "id": "#main/single_file"
 273                                 }
 274                             ],
 275                             "outputs": [
 276                                 {
 277                                     "type": "File",
 278                                     "outputSource": "#main/input_collector/output",
 279                                     "id": "#main/log_file"
 280                                 }
 281                             ],
 282                             "steps": [
 283                                 {
 284                                     "run": "#input_collector.cwl",
 285                                     "in": [
 286                                         {
 287                                             "source": "#main/single_file",
 288                                             "id": "#main/input_collector/single_file"
 289                                         }
 290                                     ],
 291                                     "out": [
 292                                         "#main/input_collector/output"
 293                                     ],
 294                                     "id": "#main/input_collector"
 295                                 }
 296                             ],
 297                             "id": "#main"
 298                         }
 299                     ]
 300                 },
 301             },
 302             '/var/lib/cwl/cwl.input.json': {
 303                 kind: MountKind.JSON,
 304                 content: {
 305                     "single_file": {
 306                         "class": "File",
 307                         "location": "keep:233454526794c0a2d56a305baeff3d30+145/1.txt",
 308                         "basename": "fileA"
 309                     }
 310                 },
 311             }
 312         },
 313         runtimeConstraints: {
 314             API: true,
 315             vcpus: 1,
 316             ram: 1073741824,
 317         },
 318         containerImage: 'arvados/jobs:1.1.4.20180618144723',
 319         cwd: '/var/spool/cwl',
 320         command: [
 321             'arvados-cwl-runner',
 322             '--local',
 323             '--api=containers',
 324             "--project-uuid=c97qk-j7d0g-s3ngc1z0748hsmf",
 325             '/var/lib/cwl/workflow.json#main',
 326             '/var/lib/cwl/cwl.input.json'
 327         ],
 328         outputPath: '/var/spool/cwl',
 329         priority: 1,
 330     });
 331 };
 332
 333 // force build comment #1