services/crunch-dispatch-slurm/crunch-dispatch-slurm_test.go

   1 package main
   2
   3 import (
   4         "bytes"
   5         "fmt"
   6         "git.curoverse.com/arvados.git/sdk/go/arvados"
   7         "git.curoverse.com/arvados.git/sdk/go/arvadosclient"
   8         "git.curoverse.com/arvados.git/sdk/go/arvadostest"
   9         "git.curoverse.com/arvados.git/sdk/go/dispatch"
  10         "io"
  11         "log"
  12         "net/http"
  13         "net/http/httptest"
  14         "os"
  15         "os/exec"
  16         "strings"
  17         "testing"
  18         "time"
  19
  20         . "gopkg.in/check.v1"
  21 )
  22
  23 // Gocheck boilerplate
  24 func Test(t *testing.T) {
  25         TestingT(t)
  26 }
  27
  28 var _ = Suite(&TestSuite{})
  29 var _ = Suite(&MockArvadosServerSuite{})
  30
  31 type TestSuite struct{}
  32 type MockArvadosServerSuite struct{}
  33
  34 var initialArgs []string
  35
  36 func (s *TestSuite) SetUpSuite(c *C) {
  37         initialArgs = os.Args
  38 }
  39
  40 func (s *TestSuite) TearDownSuite(c *C) {
  41 }
  42
  43 func (s *TestSuite) SetUpTest(c *C) {
  44         args := []string{"crunch-dispatch-slurm"}
  45         os.Args = args
  46
  47         arvadostest.StartAPI()
  48         os.Setenv("ARVADOS_API_TOKEN", arvadostest.Dispatch1Token)
  49 }
  50
  51 func (s *TestSuite) TearDownTest(c *C) {
  52         os.Args = initialArgs
  53         arvadostest.StopAPI()
  54 }
  55
  56 func (s *MockArvadosServerSuite) TearDownTest(c *C) {
  57         arvadostest.ResetEnv()
  58 }
  59
  60 func (s *TestSuite) TestIntegrationNormal(c *C) {
  61         container := s.integrationTest(c, func() *exec.Cmd { return exec.Command("echo", "zzzzz-dz642-queuedcontainer") },
  62                 []string(nil),
  63                 func(dispatcher *dispatch.Dispatcher, container arvados.Container) {
  64                         dispatcher.UpdateState(container.UUID, dispatch.Running)
  65                         time.Sleep(3 * time.Second)
  66                         dispatcher.UpdateState(container.UUID, dispatch.Complete)
  67                 })
  68         c.Check(container.State, Equals, arvados.ContainerStateComplete)
  69 }
  70
  71 func (s *TestSuite) TestIntegrationCancel(c *C) {
  72
  73         // Override sbatchCmd
  74         var scancelCmdLine []string
  75         defer func(orig func(arvados.Container) *exec.Cmd) {
  76                 scancelCmd = orig
  77         }(scancelCmd)
  78         scancelCmd = func(container arvados.Container) *exec.Cmd {
  79                 scancelCmdLine = scancelFunc(container).Args
  80                 return exec.Command("echo")
  81         }
  82
  83         container := s.integrationTest(c, func() *exec.Cmd { return exec.Command("echo", "zzzzz-dz642-queuedcontainer") },
  84                 []string(nil),
  85                 func(dispatcher *dispatch.Dispatcher, container arvados.Container) {
  86                         dispatcher.UpdateState(container.UUID, dispatch.Running)
  87                         time.Sleep(1 * time.Second)
  88                         dispatcher.Arv.Update("containers", container.UUID,
  89                                 arvadosclient.Dict{
  90                                         "container": arvadosclient.Dict{"priority": 0}},
  91                                 nil)
  92                 })
  93         c.Check(container.State, Equals, arvados.ContainerStateCancelled)
  94         c.Check(scancelCmdLine, DeepEquals, []string{"scancel", "--name=zzzzz-dz642-queuedcontainer"})
  95 }
  96
  97 func (s *TestSuite) TestIntegrationMissingFromSqueue(c *C) {
  98         container := s.integrationTest(c, func() *exec.Cmd { return exec.Command("echo") }, []string{"sbatch", "--share",
  99                 fmt.Sprintf("--job-name=%s", "zzzzz-dz642-queuedcontainer"),
 100                 fmt.Sprintf("--mem-per-cpu=%d", 2862),
 101                 fmt.Sprintf("--cpus-per-task=%d", 4)},
 102                 func(dispatcher *dispatch.Dispatcher, container arvados.Container) {
 103                         dispatcher.UpdateState(container.UUID, dispatch.Running)
 104                         time.Sleep(3 * time.Second)
 105                         dispatcher.UpdateState(container.UUID, dispatch.Complete)
 106                 })
 107         c.Check(container.State, Equals, arvados.ContainerStateCancelled)
 108 }
 109
 110 func (s *TestSuite) integrationTest(c *C,
 111         newSqueueCmd func() *exec.Cmd,
 112         sbatchCmdComps []string,
 113         runContainer func(*dispatch.Dispatcher, arvados.Container)) arvados.Container {
 114         arvadostest.ResetEnv()
 115
 116         arv, err := arvadosclient.MakeArvadosClient()
 117         c.Assert(err, IsNil)
 118
 119         var sbatchCmdLine []string
 120
 121         // Override sbatchCmd
 122         defer func(orig func(arvados.Container) *exec.Cmd) {
 123                 sbatchCmd = orig
 124         }(sbatchCmd)
 125         sbatchCmd = func(container arvados.Container) *exec.Cmd {
 126                 sbatchCmdLine = sbatchFunc(container).Args
 127                 return exec.Command("sh")
 128         }
 129
 130         // Override squeueCmd
 131         defer func(orig func() *exec.Cmd) {
 132                 squeueCmd = orig
 133         }(squeueCmd)
 134         squeueCmd = newSqueueCmd
 135
 136         // There should be no queued containers now
 137         params := arvadosclient.Dict{
 138                 "filters": [][]string{{"state", "=", "Queued"}},
 139         }
 140         var containers arvados.ContainerList
 141         err = arv.List("containers", params, &containers)
 142         c.Check(err, IsNil)
 143         c.Check(len(containers.Items), Equals, 1)
 144
 145         echo := "echo"
 146         crunchRunCommand = &echo
 147
 148         doneProcessing := make(chan struct{})
 149         dispatcher := dispatch.Dispatcher{
 150                 Arv:          arv,
 151                 PollInterval: time.Duration(1) * time.Second,
 152                 RunContainer: func(dispatcher *dispatch.Dispatcher,
 153                         container arvados.Container,
 154                         status chan arvados.Container) {
 155                         go runContainer(dispatcher, container)
 156                         run(dispatcher, container, status)
 157                         doneProcessing <- struct{}{}
 158                 },
 159                 DoneProcessing: doneProcessing}
 160
 161         squeueUpdater.StartMonitor(time.Duration(500) * time.Millisecond)
 162
 163         err = dispatcher.RunDispatcher()
 164         c.Assert(err, IsNil)
 165
 166         squeueUpdater.Done()
 167
 168         c.Check(sbatchCmdLine, DeepEquals, sbatchCmdComps)
 169
 170         // There should be no queued containers now
 171         err = arv.List("containers", params, &containers)
 172         c.Check(err, IsNil)
 173         c.Check(len(containers.Items), Equals, 0)
 174
 175         // Previously "Queued" container should now be in "Complete" state
 176         var container arvados.Container
 177         err = arv.Get("containers", "zzzzz-dz642-queuedcontainer", nil, &container)
 178         c.Check(err, IsNil)
 179         return container
 180 }
 181
 182 func (s *MockArvadosServerSuite) Test_APIErrorGettingContainers(c *C) {
 183         apiStubResponses := make(map[string]arvadostest.StubResponse)
 184         apiStubResponses["/arvados/v1/api_client_authorizations/current"] = arvadostest.StubResponse{200, `{"uuid":"` + arvadostest.Dispatch1AuthUUID + `"}`}
 185         apiStubResponses["/arvados/v1/containers"] = arvadostest.StubResponse{500, string(`{}`)}
 186
 187         testWithServerStub(c, apiStubResponses, "echo", "Error getting list of containers")
 188 }
 189
 190 func testWithServerStub(c *C, apiStubResponses map[string]arvadostest.StubResponse, crunchCmd string, expected string) {
 191         apiStub := arvadostest.ServerStub{apiStubResponses}
 192
 193         api := httptest.NewServer(&apiStub)
 194         defer api.Close()
 195
 196         arv := arvadosclient.ArvadosClient{
 197                 Scheme:    "http",
 198                 ApiServer: api.URL[7:],
 199                 ApiToken:  "abc123",
 200                 Client:    &http.Client{Transport: &http.Transport{}},
 201                 Retries:   0,
 202         }
 203
 204         buf := bytes.NewBuffer(nil)
 205         log.SetOutput(io.MultiWriter(buf, os.Stderr))
 206         defer log.SetOutput(os.Stderr)
 207
 208         crunchRunCommand = &crunchCmd
 209
 210         doneProcessing := make(chan struct{})
 211         dispatcher := dispatch.Dispatcher{
 212                 Arv:          arv,
 213                 PollInterval: time.Duration(1) * time.Second,
 214                 RunContainer: func(dispatcher *dispatch.Dispatcher,
 215                         container arvados.Container,
 216                         status chan arvados.Container) {
 217                         go func() {
 218                                 time.Sleep(1 * time.Second)
 219                                 dispatcher.UpdateState(container.UUID, dispatch.Running)
 220                                 dispatcher.UpdateState(container.UUID, dispatch.Complete)
 221                         }()
 222                         run(dispatcher, container, status)
 223                         doneProcessing <- struct{}{}
 224                 },
 225                 DoneProcessing: doneProcessing}
 226
 227         go func() {
 228                 for i := 0; i < 80 && !strings.Contains(buf.String(), expected); i++ {
 229                         time.Sleep(100 * time.Millisecond)
 230                 }
 231                 dispatcher.DoneProcessing <- struct{}{}
 232         }()
 233
 234         err := dispatcher.RunDispatcher()
 235         c.Assert(err, IsNil)
 236
 237         c.Check(buf.String(), Matches, `(?ms).*`+expected+`.*`)
 238 }