1 // Copyright (C) The Arvados Authors. All rights reserved.
3 // SPDX-License-Identifier: AGPL-3.0
5 import { Dispatch } from "redux";
6 import { RootState } from 'store/store';
7 import { ServiceRepository } from 'services/services';
8 import { updateResources } from 'store/resources/resources-actions';
9 import { Process } from './process';
10 import { dialogActions } from 'store/dialog/dialog-actions';
11 import { snackbarActions, SnackbarKind } from 'store/snackbar/snackbar-actions';
12 import { projectPanelActions } from 'store/project-panel/project-panel-action';
13 import { navigateToRunProcess } from 'store/navigation/navigation-action';
14 import { goToStep, runProcessPanelActions } from 'store/run-process-panel/run-process-panel-actions';
15 import { getResource } from 'store/resources/resources';
16 import { initialize } from "redux-form";
17 import { RUN_PROCESS_BASIC_FORM, RunProcessBasicFormData } from "views/run-process-panel/run-process-basic-form";
18 import { RunProcessAdvancedFormData, RUN_PROCESS_ADVANCED_FORM } from "views/run-process-panel/run-process-advanced-form";
19 import { MOUNT_PATH_CWL_WORKFLOW, MOUNT_PATH_CWL_INPUT } from 'models/process';
20 import { CommandInputParameter, getWorkflow, getWorkflowInputs, getWorkflowOutputs, WorkflowInputsData } from "models/workflow";
21 import { ProjectResource } from "models/project";
22 import { UserResource } from "models/user";
23 import { CommandOutputParameter } from "cwlts/mappings/v1.0/CommandOutputParameter";
25 export const loadProcess = (containerRequestUuid: string) =>
26 async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository): Promise<Process> => {
27 const containerRequest = await services.containerRequestService.get(containerRequestUuid);
28 dispatch<any>(updateResources([containerRequest]));
30 if (containerRequest.outputUuid) {
31 const collection = await services.collectionService.get(containerRequest.outputUuid, false);
32 dispatch<any>(updateResources([collection]));
35 if (containerRequest.containerUuid) {
36 const container = await services.containerService.get(containerRequest.containerUuid, false);
37 dispatch<any>(updateResources([container]));
38 if (container.runtimeUserUuid) {
39 const runtimeUser = await services.userService.get(container.runtimeUserUuid, false);
40 dispatch<any>(updateResources([runtimeUser]));
42 return { containerRequest, container };
44 return { containerRequest };
47 export const loadContainers = (filters: string, loadMounts: boolean = true) =>
48 async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
49 let args: any = { filters };
51 args.select = containerFieldsNoMounts;
53 const { items } = await services.containerService.list(args);
54 dispatch<any>(updateResources(items));
58 // Until the api supports unselecting fields, we need a list of all other fields to omit mounts
59 const containerFieldsNoMounts = [
72 "interactive_session_started",
78 "modified_by_client_uuid",
79 "modified_by_user_uuid",
82 "output_storage_classes",
87 "runtime_auth_scopes",
88 "runtime_constraints",
91 "scheduling_parameters",
97 export const cancelRunningWorkflow = (uuid: string) =>
98 async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
100 const process = await services.containerRequestService.update(uuid, { priority: 0 });
103 throw new Error('Could not cancel the process.');
107 export const reRunProcess = (processUuid: string, workflowUuid: string) =>
108 (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
109 const process = getResource<any>(processUuid)(getState().resources);
110 const workflows = getState().runProcessPanel.searchWorkflows;
111 const workflow = workflows.find(workflow => workflow.uuid === workflowUuid);
112 if (workflow && process) {
113 const mainWf = getWorkflow(process.mounts[MOUNT_PATH_CWL_WORKFLOW]);
114 if (mainWf) { mainWf.inputs = getInputs(process); }
115 const stringifiedDefinition = JSON.stringify(process.mounts[MOUNT_PATH_CWL_WORKFLOW].content);
116 const newWorkflow = { ...workflow, definition: stringifiedDefinition };
118 const owner = getResource<ProjectResource | UserResource>(workflow.ownerUuid)(getState().resources);
119 const basicInitialData: RunProcessBasicFormData = { name: `Copy of: ${process.name}`, description: process.description, owner };
120 dispatch<any>(initialize(RUN_PROCESS_BASIC_FORM, basicInitialData));
122 const advancedInitialData: RunProcessAdvancedFormData = {
123 output: process.outputName,
124 runtime: process.schedulingParameters.max_run_time,
125 ram: process.runtimeConstraints.ram,
126 vcpus: process.runtimeConstraints.vcpus,
127 keep_cache_ram: process.runtimeConstraints.keep_cache_ram,
128 acr_container_image: process.containerImage
130 dispatch<any>(initialize(RUN_PROCESS_ADVANCED_FORM, advancedInitialData));
132 dispatch<any>(navigateToRunProcess);
133 dispatch<any>(goToStep(1));
134 dispatch(runProcessPanelActions.SET_STEP_CHANGED(true));
135 dispatch(runProcessPanelActions.SET_SELECTED_WORKFLOW(newWorkflow));
137 dispatch<any>(snackbarActions.OPEN_SNACKBAR({ message: `You can't re-run this process`, kind: SnackbarKind.ERROR }));
142 * Fetches raw inputs from containerRequest mounts with fallback to properties
143 * Returns undefined if containerRequest not loaded
144 * Returns {} if inputs not found in mounts or props
146 export const getRawInputs = (data: any): WorkflowInputsData | undefined => {
147 if (!data) { return undefined; }
148 const mountInput = data.mounts?.[MOUNT_PATH_CWL_INPUT]?.content;
149 const propsInput = data.properties?.cwl_input;
150 if (!mountInput && !propsInput) { return {}; }
151 return (mountInput || propsInput);
154 export const getInputs = (data: any): CommandInputParameter[] => {
155 // Definitions from mounts are needed so we return early if missing
156 if (!data || !data.mounts || !data.mounts[MOUNT_PATH_CWL_WORKFLOW]) { return []; }
157 const content = getRawInputs(data) as any;
158 // Only escape if content is falsy to allow displaying definitions if no inputs are present
159 // (Don't check raw content length)
160 if (!content) { return []; }
162 const inputs = getWorkflowInputs(data.mounts[MOUNT_PATH_CWL_WORKFLOW].content);
163 return inputs ? inputs.map(
169 default: content[it.id],
170 value: content[it.id.split('/').pop()] || [],
178 * Fetches raw outputs from containerRequest properties
179 * Assumes containerRequest is loaded
181 export const getRawOutputs = (data: any): CommandInputParameter[] | undefined => {
182 if (!data || !data.properties || !data.properties.cwl_output) { return undefined; }
183 return (data.properties.cwl_output);
186 export type InputCollectionMount = {
191 export const getInputCollectionMounts = (data: any): InputCollectionMount[] => {
192 if (!data || !data.mounts) { return []; }
193 return Object.keys(data.mounts)
198 .filter(mount => mount.kind === 'collection' &&
199 mount.portable_data_hash &&
203 pdh: mount.portable_data_hash,
207 export const getOutputParameters = (data: any): CommandOutputParameter[] => {
208 if (!data || !data.mounts || !data.mounts[MOUNT_PATH_CWL_WORKFLOW]) { return []; }
209 const outputs = getWorkflowOutputs(data.mounts[MOUNT_PATH_CWL_WORKFLOW].content);
210 return outputs ? outputs.map(
222 export const openRemoveProcessDialog = (uuid: string) =>
223 (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
224 dispatch(dialogActions.OPEN_DIALOG({
225 id: REMOVE_PROCESS_DIALOG,
227 title: 'Remove process permanently',
228 text: 'Are you sure you want to remove this process?',
229 confirmButtonLabel: 'Remove',
235 export const REMOVE_PROCESS_DIALOG = 'removeProcessDialog';
237 export const removeProcessPermanently = (uuid: string) =>
238 async (dispatch: Dispatch, getState: () => RootState, services: ServiceRepository) => {
239 dispatch(snackbarActions.OPEN_SNACKBAR({ message: 'Removing ...', kind: SnackbarKind.INFO }));
240 await services.containerRequestService.delete(uuid);
241 dispatch(projectPanelActions.REQUEST_ITEMS());
242 dispatch(snackbarActions.OPEN_SNACKBAR({ message: 'Removed.', hideDuration: 2000, kind: SnackbarKind.SUCCESS }));