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29 <div class="col-sm-8"><h4 class="modal-title" style="text-align: right">Getting Started with Arvados</h4></div> <%#Todo: center instead of right%>
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37 <div style="margin-top: -0.5em; margin-left: 0.5em;">
38 <p><div style="font-size: 150%;">Welcome!</div></p>
40 What you're looking at right now is <b>Workbench</b>, the graphical interface to the Arvados system.
43 <p> <%= image_tag "pipeline-running.gif", :class => "style_image1" %></p> <%#Todo: shorter gif%>
44 <p>Running the Pathomap pipeline in Arvados.</p>
47 Click the <span class="btn btn-sm btn-primary">Next ></span> button below for a speed tour of Arvados.
48 </p><p style="margin-top:2em;">
49 <em><strong>Note:</strong> You can always come back to this Getting Started guide by clicking the <span class="fa fa-lg fa-question-circle"></span> in the upper-right corner.</em>
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56 <div style="margin-top: -0.5em; margin-left: 0.5em;">
57 <p><div style="font-size: 150%;">Take It for a Spin</div></p>
59 Run your first pipeline in 3 quick steps:
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62 <p style="margin-left: 1em;">
63 <em>First, <a href="/users/welcome">log-in or register</a> with any Google account if you haven't already.</em>
65 <ol><li> Go to the <span class="btn btn-sm btn-default"><i class="fa fa-lg fa-fw fa-dashboard"></i> Dashboard</span> > <span class="btn btn-sm btn-primary"><i class="fa fa-fw fa-gear"></i> Run a pipeline...</span>
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67 <%= image_tag "mouse-move.gif", :class => "style_image2" %>
70 <li> <span class="btn btn-sm btn-default"><i class="fa fa-fw fa-gear"></i>Mason Lab -- Ancestry Mapper (public)</span> > <span class="btn btn-sm btn-primary">Next: choose inputs <i class="fa fa-fw fa-arrow-circle-right"></i></span></li><br>
71 <li> <span class="btn btn-sm btn-primary">Run <i class="fa fa-fw fa-play"></i></span></li>
74 <p style="margin-top:1em;">
75 <i class="fa fa-flag fa-flip-horizontal" style="color: green"></i> <i class="fa fa-child"></i>
76 <strong>Voila!</strong> <i class="fa fa-child"></i> <i class="fa fa-flag" style="color: green"></i>
77 Your pipeline is now spooling up and getting ready to run!
79 Go ahead, try it for yourself right now. <span class="glyphicon glyphicon-thumbs-up"></span>
81 Or click <span class="btn btn-sm btn-primary">Next ></span> below to keep reading!
87 <div class="modal-body" style="height: 40em; overflow-y: scroll">
88 <div style="margin-top: -0.5em; margin-left: 0.5em;">
89 <p><div style="font-size: 150%;">Three Useful Terms</div></p>
92 <strong>Pipeline</strong> — A re-usable series of analysis steps.
95 Also known as a “workflow” in other systems
97 A list of well-documented public pipelines can be found in the upper right corner by clicking the <span class="fa fa-lg fa-question-circle"></span> > <a href="<%= Rails.configuration.arvados_public_data_doc_url %>">Public Pipelines and Datasets</a>
99 Pro-tip: A Pipeline contains Jobs which contain Tasks
101 Pipelines can only be shared within a project
107 <strong>Collection </strong>— Like a folder, but better.
110 Upload data right in your browser
112 Better than a folder?
114 Collections contain the content-address of the data instead of the data itself
116 Sets of data can be flexibly defined and re-defined without duplicating data
119 Collections can be shared using the "Sharing and Permissions" > "Share" button
125 <strong>Projects </strong>— Contain pipelines templates, pipeline instances (individual runs of a pipeline), and collections.
127 The most useful one is your default "Home" project, under Projects > Home
129 Projects can be shared using the "sharing" tab
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140 <div style="margin-top: -0.5em; margin-left: 0.5em;">
141 <p><div style="font-size: 150%;">Six Reasons Arvados is Awesome</div></p>
143 This guide, and in fact all of Workbench, is just a teaser for the full power of Arvados:
147 <strong>Reproducible analyses</strong>: Enough said.
149 <strong>Data provenance</strong>: Every file in Arvados can tell you where it came from.
151 <strong>Serious scaling</strong>: Need 500 GB of space? 200 compute hours? Arvados scales and parallelizes your work for you intelligently.
153 <strong>Share pipelines or data</strong>: Easily publish your work to the world, just like <a href="http://www.pathomap.org/2015/04/08/run-the-pathomap-human-ancestry-pipeline-on-arvados/">the Pathomap team did</a>.
155 <strong>Use existing pipelines</strong>: Use best-practices pipelines on your own data with the click of a button.
157 <strong>Open source</strong>: Arvados is completely open source. Check out our <a href="http://dev.arvados.org">developer site</a>.
160 <p style="margin-top: 1em;">
161 Want to use the command-line, or hungry to learn more? Check out the User Guide at <a href="http://doc.arvados.org/">doc.arvados.org</a>.
163 Questions still? Head over to <a href="http://doc.arvados.org/">doc.arvados.org</a> to find mailing-list and contact info for the Arvados community.
165 That's all, folks! Click the "x" up top to leave this guide.
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