2 # Copyright (C) The Arvados Authors. All rights reserved.
4 # SPDX-License-Identifier: AGPL-3.0
6 . `dirname "$(readlink -f "$0")"`/libcloud-pin.sh
9 . `dirname "$(readlink -f "$0")"`/run-library.sh
11 read -rd "\000" helpmessage <<EOF
12 $(basename $0): Install and test Arvados components.
14 Exit non-zero if any tests fail.
17 $(basename $0) WORKSPACE=/path/to/arvados [options]
21 --skip FOO Do not test the FOO component.
22 --skip sanity Skip initial dev environment sanity checks.
23 --skip install Do not run any install steps. Just run tests.
24 You should provide GOPATH, GEMHOME, and VENVDIR options
25 from a previous invocation if you use this option.
26 --only FOO Do not test anything except the FOO component.
27 --temp DIR Install components and dependencies under DIR instead of
28 making a new temporary directory. Implies --leave-temp.
29 --leave-temp Do not remove GOPATH, virtualenv, and other temp dirs at exit.
30 Instead, show the path to give as --temp to reuse them in
31 subsequent invocations.
32 --repeat N Repeat each install/test step until it succeeds N times.
33 --retry Prompt to retry if an install or test suite fails.
34 --only-install Run specific install step
35 --short Skip (or scale down) some slow tests.
36 --interactive Set up, then prompt for test/install steps to perform.
37 WORKSPACE=path Arvados source tree to test.
38 CONFIGSRC=path Dir with config.yml file containing PostgreSQL section for use by tests.
39 services/api_test="TEST=test/functional/arvados/v1/collections_controller_test.rb"
40 Restrict apiserver tests to the given file
41 sdk/python_test="--test-suite tests.test_keep_locator"
42 Restrict Python SDK tests to the given class
43 apps/workbench_test="TEST=test/integration/pipeline_instances_test.rb"
44 Restrict Workbench tests to the given file
45 services/arv-git-httpd_test="-check.vv"
46 Show all log messages, even when tests pass (also works
47 with services/keepstore_test etc.)
49 Print more debug messages
50 envvar=value Set \$envvar to value. Primarily useful for WORKSPACE,
51 *_test, and other examples shown above.
53 Assuming "--skip install" is not given, all components are installed
54 into \$GOPATH, \$VENDIR, and \$GEMHOME before running any tests. Many
55 test suites depend on other components being installed, and installing
56 everything tends to be quicker than debugging dependencies.
58 As a special concession to the current CI server config, CONFIGSRC
59 defaults to $HOME/arvados-api-server if that directory exists.
61 More information and background:
63 https://arvados.org/projects/arvados/wiki/Running_tests
68 apps/workbench_units (*)
69 apps/workbench_functionals (*)
70 apps/workbench_integration (*)
71 apps/workbench_benchmark
72 apps/workbench_profile
79 lib/controller/federation
80 lib/controller/railsproxy
89 lib/dispatchcloud/container
90 lib/dispatchcloud/scheduler
91 lib/dispatchcloud/ssh_executor
92 lib/dispatchcloud/worker
97 services/arv-git-httpd
99 services/dockercleaner
106 services/keep-balance
108 services/crunch-dispatch-local
109 services/crunch-dispatch-slurm
131 tools/crunchstat-summary
132 tools/crunchstat-summary:py3
135 tools/keep-block-check
137 (*) apps/workbench is shorthand for apps/workbench_units +
138 apps/workbench_functionals + apps/workbench_integration
142 # First make sure to remove any ARVADOS_ variables from the calling
143 # environment that could interfere with the tests.
144 unset $(env | cut -d= -f1 | grep \^ARVADOS_)
146 # Reset other variables that could affect our [tests'] behavior by
156 export LANG=en_US.UTF-8
164 if [[ -z "$temp" ]]; then
165 # we did not even get as far as making a temp dir
167 elif [[ -z "$temp_preserve" ]]; then
168 # Go creates readonly dirs in the module cache, which cause
169 # "rm -rf" to fail unless we chmod first.
173 echo "Leaving behind temp dirs in $temp"
179 echo >&2 "Fatal: $* (encountered in ${FUNCNAME[1]} at ${BASH_SOURCE[1]} line ${BASH_LINENO[0]})"
185 if which create-plot-data-from-log.sh >/dev/null; then
186 create-plot-data-from-log.sh $BUILD_NUMBER "$WORKSPACE/apps/workbench/log/test.log" "$WORKSPACE/apps/workbench/log/"
188 rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
190 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
197 [[ -n "${skip[sanity]}" ]] && return 0
198 ( [[ -n "$WORKSPACE" ]] && [[ -d "$WORKSPACE/services" ]] ) \
199 || fatal "WORKSPACE environment variable not set to a source directory (see: $0 --help)"
200 [[ -z "$CONFIGSRC" ]] || [[ -s "$CONFIGSRC/config.yml" ]] \
201 || fatal "CONFIGSRC is $CONFIGSRC but '$CONFIGSRC/config.yml' is empty or not found (see: $0 --help)"
202 echo Checking dependencies:
203 echo "locale: ${LANG}"
204 [[ "$(locale charmap)" = "UTF-8" ]] \
205 || fatal "Locale '${LANG}' is broken/missing. Try: echo ${LANG} | sudo tee -a /etc/locale.gen && sudo locale-gen"
208 || fatal "No ruby. Install >=2.1.9 (using rbenv, rvm, or source)"
211 || fatal "No go binary. See http://golang.org/doc/install"
212 [[ $(go version) =~ go1.([0-9]+) ]] && [[ ${BASH_REMATCH[1]} -ge 12 ]] \
213 || fatal "Go >= 1.12 required. See http://golang.org/doc/install"
215 gcc --version | egrep ^gcc \
216 || fatal "No gcc. Try: apt-get install build-essential"
218 find /usr/include -path '*fuse/fuse.h' | egrep --max-count=1 . \
219 || fatal "No fuse/fuse.h. Try: apt-get install libfuse-dev"
221 find /usr/include -path '*gnutls/gnutls.h' | egrep --max-count=1 . \
222 || fatal "No gnutls/gnutls.h. Try: apt-get install libgnutls28-dev"
223 echo -n 'virtualenv: '
224 python3 -m venv -h | egrep --max-count=1 . \
225 || fatal "No virtualenv. Try: apt-get install python3-venv"
226 echo -n 'Python3 pyconfig.h: '
227 find /usr/include -path '*/python3*/pyconfig.h' | egrep --max-count=1 . \
228 || fatal "No Python3 pyconfig.h. Try: apt-get install python3-dev"
230 || fatal "No netstat. Try: apt-get install net-tools"
232 PATH="$PATH:/sbin:/usr/sbin:/usr/local/sbin" nginx -v \
233 || fatal "No nginx. Try: apt-get install nginx"
235 perl -v | grep version \
236 || fatal "No perl. Try: apt-get install perl"
237 for mod in ExtUtils::MakeMaker JSON LWP Net::SSL; do
238 echo -n "perl $mod: "
239 perl -e "use $mod; print \"\$$mod::VERSION\\n\"" \
240 || fatal "No $mod. Try: apt-get install perl-modules libcrypt-ssleay-perl libjson-perl libwww-perl"
244 || fatal "No gitolite. Try: apt-get install gitolite3"
247 || fatal "No npm. Try: wget -O- https://nodejs.org/dist/v6.11.2/node-v6.11.2-linux-x64.tar.xz | sudo tar -C /usr/local -xJf - && sudo ln -s ../node-v6.11.2-linux-x64/bin/{node,npm} /usr/local/bin/"
249 cadaver --version | grep -w cadaver \
250 || fatal "No cadaver. Try: apt-get install cadaver"
251 echo -n 'libattr1 xattr.h: '
252 find /usr/include -path '*/attr/xattr.h' | egrep --max-count=1 . \
253 || fatal "No libattr1 xattr.h. Try: apt-get install libattr1-dev"
254 echo -n 'libcurl curl.h: '
255 find /usr/include -path '*/curl/curl.h' | egrep --max-count=1 . \
256 || fatal "No libcurl curl.h. Try: apt-get install libcurl4-gnutls-dev"
257 echo -n 'libpq libpq-fe.h: '
258 find /usr/include -path '*/postgresql/libpq-fe.h' | egrep --max-count=1 . \
259 || fatal "No libpq libpq-fe.h. Try: apt-get install libpq-dev"
260 echo -n 'libpam pam_appl.h: '
261 find /usr/include -path '*/security/pam_appl.h' | egrep --max-count=1 . \
262 || fatal "No libpam pam_appl.h. Try: apt-get install libpam0g-dev"
263 echo -n 'postgresql: '
264 psql --version || fatal "No postgresql. Try: apt-get install postgresql postgresql-client-common"
265 echo -n 'phantomjs: '
266 phantomjs --version || fatal "No phantomjs. Try: apt-get install phantomjs"
268 which Xvfb || fatal "No xvfb. Try: apt-get install xvfb"
270 dot -V || fatal "No graphviz. Try: apt-get install graphviz"
271 echo -n 'geckodriver: '
272 geckodriver --version | grep ^geckodriver || echo "No geckodriver. Try: wget -O- https://github.com/mozilla/geckodriver/releases/download/v0.23.0/geckodriver-v0.23.0-linux64.tar.gz | sudo tar -C /usr/local/bin -xzf - geckodriver"
274 if [[ "$NEED_SDK_R" = true ]]; then
277 which Rscript || fatal "No Rscript. Try: apt-get install r-base"
279 Rscript -e "library('testthat')" || fatal "No testthat. Try: apt-get install r-cran-testthat"
280 # needed for roxygen2, needed for devtools, needed for R sdk
281 pkg-config --exists libxml-2.0 || fatal "No libxml2. Try: apt-get install libxml2-dev"
282 # needed for pkgdown, builds R SDK doc pages
283 which pandoc || fatal "No pandoc. Try: apt-get install pandoc"
285 echo 'procs with /dev/fuse open:'
286 find /proc/*/fd -lname /dev/fuse 2>/dev/null | cut -d/ -f3 | xargs --no-run-if-empty ps -lywww
287 echo 'grep fuse /proc/self/mountinfo:'
288 grep fuse /proc/self/mountinfo
292 # i.e. rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
293 # $BUILD_NUMBER is set by Jenkins if this script is being called as part of a Jenkins run
294 if [[ -f "$1/$2" ]]; then
295 THEDATE=`date +%Y%m%d%H%M%S`
296 mv "$1/$2" "$1/$THEDATE-$BUILD_NUMBER-$2"
297 gzip "$1/$THEDATE-$BUILD_NUMBER-$2"
305 skip[apps/workbench_profile]=1
312 echo >&2 "$helpmessage"
320 only[$1]=1; skip[$1]=""; shift
332 only_install="$1"; shift
342 repeat=$((${1}+0)); shift
348 suite="${arg%%_test=*}"
350 testargs["$suite"]="$args"
353 eval export $(echo $arg | cut -d= -f1)=\"$(echo $arg | cut -d= -f2-)\"
356 echo >&2 "$0: Unrecognized option: '$arg'. Try: $0 --help"
362 # R SDK installation is very slow (~360s in a clean environment) and only
363 # required when testing it. Skip that step if it is not needed.
366 if [[ ${#only[@]} -ne 0 ]] &&
367 [[ -z "${only['sdk/R']}" && -z "${only['doc']}" ]]; then
371 if [[ ${skip["sdk/R"]} == 1 && ${skip["doc"]} == 1 ]]; then
375 if [[ $NEED_SDK_R == false ]]; then
376 echo "R SDK not needed, it will not be installed."
381 pid="$(cat "$WORKSPACE/tmp/${svc}.pid")"
382 if [[ -z "$pid" ]] || ! kill -0 "$pid"; then
383 tail $WORKSPACE/tmp/${1}*.log
384 echo "${svc} pid ${pid} not running"
387 echo "${svc} pid ${pid} ok"
392 base=$("${VENV3DIR}/bin/python3" -c "import yaml; print(list(yaml.safe_load(open('$ARVADOS_CONFIG','r'))['Clusters']['zzzzz']['Services']['$1']['InternalURLs'].keys())[0])")
393 url="$base/_health/ping"
394 if ! curl -Ss -H "Authorization: Bearer e687950a23c3a9bceec28c6223a06c79" "${url}" | tee -a /dev/stderr | grep '"OK"'; then
400 checkdiscoverydoc() {
401 dd="https://${1}/discovery/v1/apis/arvados/v1/rest"
402 if ! (set -o pipefail; curl -fsk "$dd" | grep -q ^{ ); then
403 echo >&2 "ERROR: could not retrieve discovery doc from RailsAPI at $dd"
404 tail -v $WORKSPACE/tmp/railsapi.log
411 if [[ -n "$ARVADOS_TEST_API_HOST" ]]; then
414 . "$VENV3DIR/bin/activate"
415 echo 'Starting API, controller, keepproxy, keep-web, arv-git-httpd, ws, and nginx ssl proxy...'
416 if [[ ! -d "$WORKSPACE/services/api/log" ]]; then
417 mkdir -p "$WORKSPACE/services/api/log"
419 # Remove empty api.pid file if it exists
420 if [[ -f "$WORKSPACE/tmp/api.pid" && ! -s "$WORKSPACE/tmp/api.pid" ]]; then
421 rm -f "$WORKSPACE/tmp/api.pid"
423 all_services_stopped=
427 && eval $(python3 sdk/python/tests/run_test_server.py start --auth admin) \
428 && export ARVADOS_TEST_API_HOST="$ARVADOS_API_HOST" \
429 && export ARVADOS_TEST_API_INSTALLED="$$" \
430 && checkpidfile api \
431 && checkdiscoverydoc $ARVADOS_API_HOST \
432 && eval $(python3 sdk/python/tests/run_test_server.py start_nginx) \
433 && checkpidfile nginx \
434 && python3 sdk/python/tests/run_test_server.py start_controller \
435 && checkpidfile controller \
436 && checkhealth Controller \
437 && checkdiscoverydoc $ARVADOS_API_HOST \
438 && python3 sdk/python/tests/run_test_server.py start_keep_proxy \
439 && checkpidfile keepproxy \
440 && python3 sdk/python/tests/run_test_server.py start_keep-web \
441 && checkpidfile keep-web \
442 && checkhealth WebDAV \
443 && python3 sdk/python/tests/run_test_server.py start_arv-git-httpd \
444 && checkpidfile arv-git-httpd \
445 && checkhealth GitHTTP \
446 && python3 sdk/python/tests/run_test_server.py start_ws \
448 && export ARVADOS_TEST_PROXY_SERVICES=1 \
449 && (env | egrep ^ARVADOS) \
452 if [[ $fail != 0 ]]; then
453 unset ARVADOS_TEST_API_HOST
459 if [[ -n "$all_services_stopped" ]]; then
462 unset ARVADOS_TEST_API_HOST ARVADOS_TEST_PROXY_SERVICES
463 . "$VENV3DIR/bin/activate" || return
465 && python3 sdk/python/tests/run_test_server.py stop_nginx \
466 && python3 sdk/python/tests/run_test_server.py stop_arv-git-httpd \
467 && python3 sdk/python/tests/run_test_server.py stop_ws \
468 && python3 sdk/python/tests/run_test_server.py stop_keep-web \
469 && python3 sdk/python/tests/run_test_server.py stop_keep_proxy \
470 && python3 sdk/python/tests/run_test_server.py stop_controller \
471 && python3 sdk/python/tests/run_test_server.py stop \
472 && all_services_stopped=1
478 failures+=("($(basename $0) interrupted)")
483 setup_ruby_environment() {
484 if [[ -s "$HOME/.rvm/scripts/rvm" ]] ; then
485 source "$HOME/.rvm/scripts/rvm"
487 elif [[ -s "/usr/local/rvm/scripts/rvm" ]] ; then
488 source "/usr/local/rvm/scripts/rvm"
494 if [[ "$using_rvm" == true ]]; then
495 # If rvm is in use, we can't just put separate "dependencies"
496 # and "gems-under-test" paths to GEM_PATH: passenger resets
497 # the environment to the "current gemset", which would lose
498 # our GEM_PATH and prevent our test suites from running ruby
499 # programs (for example, the Workbench test suite could not
500 # boot an API server or run arv). Instead, we have to make an
501 # rvm gemset and use it for everything.
503 [[ `type rvm | head -n1` == "rvm is a function" ]] \
506 # Put rvm's favorite path back in first place (overriding
507 # virtualenv, which just put itself there). Ignore rvm's
508 # complaint about not being in first place already.
509 rvm use @default 2>/dev/null
511 # Create (if needed) and switch to an @arvados-tests-* gemset,
512 # salting the gemset name so it doesn't interfere with
513 # concurrent builds in other workspaces. Leave the choice of
514 # ruby to the caller.
515 gemset="arvados-tests-$(echo -n "${WORKSPACE}" | md5sum | head -c16)"
516 rvm use "@${gemset}" --create \
517 || fatal 'rvm gemset setup'
520 (bundle version | grep -q 2.0.2) || gem install bundler -v 2.0.2
521 bundle="$(which bundle)"
523 "$bundle" version | grep 2.0.2 || fatal 'install bundler'
525 # When our "bundle install"s need to install new gems to
526 # satisfy dependencies, we want them to go where "gem install
527 # --user-install" would put them. (However, if the caller has
528 # already set GEM_HOME, we assume that's where dependencies
529 # should be installed, and we should leave it alone.)
531 if [ -z "$GEM_HOME" ]; then
532 user_gempath="$(gem env gempath)"
533 export GEM_HOME="${user_gempath%%:*}"
535 PATH="$(gem env gemdir)/bin:$PATH"
537 # When we build and install our own gems, we install them in our
538 # $GEMHOME tmpdir, and we want them to be at the front of GEM_PATH and
539 # PATH so integration tests prefer them over other versions that
540 # happen to be installed in $user_gempath, system dirs, etc.
542 tmpdir_gem_home="$(env - PATH="$PATH" HOME="$GEMHOME" gem env gempath | cut -f1 -d:)"
543 PATH="$tmpdir_gem_home/bin:$PATH"
544 export GEM_PATH="$tmpdir_gem_home:$(gem env gempath)"
546 echo "Will install dependencies to $(gem env gemdir)"
547 echo "Will install bundler and arvados gems to $tmpdir_gem_home"
548 echo "Gem search path is GEM_PATH=$GEM_PATH"
549 bundle="$tmpdir_gem_home/bin/bundle"
552 bundlers="$(gem list --details bundler)"
553 versions=(1.11.0 1.17.3 2.0.2)
554 for v in ${versions[@]}; do
555 if ! echo "$bundlers" | fgrep -q "($v)"; then
556 gem install --user $(for v in ${versions[@]}; do echo bundler:${v}; done)
560 "$bundle" version | tee /dev/stderr | grep -q 'version 2'
561 ) || fatal 'install bundler'
566 if [[ "$using_rvm" == true ]]; then
569 GEM_HOME="$tmpdir_gem_home" GEM_PATH="$tmpdir_gem_home" "$@"
573 gem_uninstall_if_exists() {
574 if gem list "$1\$" | egrep '^\w'; then
575 gem uninstall --force --all --executables "$1"
580 local venvdest="$1"; shift
581 if ! [[ -e "$venvdest/bin/activate" ]] || ! [[ -e "$venvdest/bin/pip3" ]]; then
582 python3 -m venv "$@" "$venvdest" || fatal "virtualenv $venvdest failed"
583 elif [[ -n "$short" ]]; then
586 "$venvdest/bin/pip3" install --no-cache-dir 'setuptools>=18.5' 'pip>=7'
590 # If dependencies like ruby, go, etc. are installed in
591 # /var/lib/arvados -- presumably by "arvados-server install" --
592 # then we want to use those versions, instead of whatever happens
593 # to be installed in /usr.
594 PATH="/var/lib/arvados/bin:${PATH}"
597 echo "WORKSPACE=$WORKSPACE"
599 # Clean up .pyc files that may exist in the workspace
601 find -name '*.pyc' -delete
603 if [[ -z "$temp" ]]; then
607 # Set up temporary install dirs (unless existing dirs were supplied)
608 for tmpdir in VENV3DIR GOPATH GEMHOME PERLINSTALLBASE R_LIBS
610 if [[ -z "${!tmpdir}" ]]; then
611 eval "$tmpdir"="$temp/$tmpdir"
613 if ! [[ -d "${!tmpdir}" ]]; then
614 mkdir "${!tmpdir}" || fatal "can't create ${!tmpdir} (does $temp exist?)"
618 rm -vf "${WORKSPACE}/tmp/*.log"
620 export PERLINSTALLBASE
621 export PERL5LIB="$PERLINSTALLBASE/lib/perl5${PERL5LIB:+:$PERL5LIB}"
626 # Make sure our compiled binaries under test override anything
627 # else that might be in the environment.
628 export PATH=$GOPATH/bin:$PATH
630 # Jenkins config requires that glob tmp/*.log match something. Ensure
631 # that happens even if we don't end up running services that set up
633 mkdir -p "${WORKSPACE}/tmp/" || fatal "could not mkdir ${WORKSPACE}/tmp"
634 touch "${WORKSPACE}/tmp/controller.log" || fatal "could not touch ${WORKSPACE}/tmp/controller.log"
636 unset http_proxy https_proxy no_proxy
638 # Note: this must be the last time we change PATH, otherwise rvm will
640 setup_ruby_environment
646 go mod download || fatal "Go deps failed"
647 which goimports >/dev/null || go get golang.org/x/tools/cmd/goimports || fatal "Go setup failed"
649 setup_virtualenv "$VENV3DIR"
650 . "$VENV3DIR/bin/activate"
652 # Needed for run_test_server.py which is used by certain (non-Python) tests.
655 "${VENV3DIR}/bin/pip3" install wheel
656 "${VENV3DIR}/bin/pip3" install PyYAML
657 "${VENV3DIR}/bin/pip3" install httplib2
658 "${VENV3DIR}/bin/pip3" install future
659 "${VENV3DIR}/bin/pip3" install google-api-python-client
660 "${VENV3DIR}/bin/pip3" install ciso8601
661 "${VENV3DIR}/bin/pip3" install pycurl
662 "${VENV3DIR}/bin/pip3" install ws4py
663 cd "$WORKSPACE/sdk/python"
664 python3 setup.py install
665 ) || fatal "installing PyYAML and sdk/python failed"
673 if [[ "$remain" -gt 1 ]]; then
674 remain=$((${remain}-1))
675 title "(repeating ${remain} more times)"
679 elif [[ "$retry" == 1 ]]; then
680 read -p 'Try again? [Y/n] ' x
681 if [[ "$x" != "y" ]] && [[ "$x" != "" ]]
693 apps/workbench_units | apps/workbench_functionals | apps/workbench_integration)
700 if [[ -n "${skip[$suite]}" || \
701 -n "${skip[$1]}" || \
702 (${#only[@]} -ne 0 && ${only[$suite]} -eq 0 && ${only[$1]} -eq 0) ]]; then
708 check_arvados_config "$1"
710 gofmt | doc | lib/cli | lib/cloud/azure | lib/cloud/ec2 | lib/cloud/cloudtest | lib/cmd | lib/dispatchcloud/ssh_executor | lib/dispatchcloud/worker)
711 check_arvados_config "$1"
712 # don't care whether services are running
715 check_arvados_config "$1"
716 if ! start_services; then
717 checkexit 1 "$1 tests"
718 title "test $1 -- failed to start services"
723 retry do_test_once ${@}
727 version=${ARVADOS_VERSION:-$(git log -n1 --format=%H)-dev}
728 echo "-X git.arvados.org/arvados.git/lib/cmd.version=${version} -X main.version=${version}"
738 if which deactivate >/dev/null; then deactivate; fi
739 if ! . "$VENV3DIR/bin/activate"
742 elif [[ "$2" == "go" ]]
744 covername="coverage-$(echo "$1" | sed -e 's/\//_/g')"
745 coverflags=("-covermode=count" "-coverprofile=$WORKSPACE/tmp/.$covername.tmp")
746 # We do "go install" here to catch compilation errors
747 # before trying "go test". Otherwise, coverage-reporting
748 # mode makes Go show the wrong line numbers when reporting
749 # compilation errors.
750 go install -ldflags "$(go_ldflags)" "$WORKSPACE/$1" && \
751 cd "$WORKSPACE/$1" && \
752 if [[ -n "${testargs[$1]}" ]]
754 # "go test -check.vv giturl" doesn't work, but this
756 go test ${short:+-short} ${testargs[$1]}
758 # The above form gets verbose even when testargs is
759 # empty, so use this form in such cases:
760 go test ${short:+-short} ${coverflags[@]} "git.arvados.org/arvados.git/$1"
763 if [[ -f "$WORKSPACE/tmp/.$covername.tmp" ]]
765 go tool cover -html="$WORKSPACE/tmp/.$covername.tmp" -o "$WORKSPACE/tmp/$covername.html"
766 rm "$WORKSPACE/tmp/.$covername.tmp"
768 [[ $result = 0 ]] && gofmt -e -d *.go
769 elif [[ "$2" == "pip" ]]
772 cd "$WORKSPACE/$1" && while :
774 tries=$((${tries}+1))
775 # $3 can name a path directory for us to use, including trailing
776 # slash; e.g., the bin/ subdirectory of a virtualenv.
777 if [[ -e "${3}activate" ]]; then
780 python setup.py ${short:+--short-tests-only} test ${testargs[$1]}
782 if [[ ${tries} < 3 && ${result} == 137 ]]
784 printf '\n*****\n%s tests killed -- retrying\n*****\n\n' "$1"
790 elif [[ "$2" != "" ]]
797 checkexit $result "$1 tests"
798 title "test $1 -- `timer`"
802 check_arvados_config() {
803 if [[ "$1" = "env" ]] ; then
806 if [[ -z "$ARVADOS_CONFIG" ]] ; then
807 # Create config file. The run_test_server script requires PyYAML,
808 # so virtualenv needs to be active. Downstream steps like
809 # workbench install which require a valid config.yml.
810 if [[ ! -s "$VENV3DIR/bin/activate" ]] ; then
813 . "$VENV3DIR/bin/activate"
815 eval $(python3 sdk/python/tests/run_test_server.py setup_config)
821 if [[ -n "${skip[install]}" || ( -n "${only_install}" && "${only_install}" != "${1}" && "${only_install}" != "${2}" ) ]]; then
824 check_arvados_config "$1"
825 retry do_install_once ${@}
833 if which deactivate >/dev/null; then deactivate; fi
834 if [[ "$1" != "env" ]] && ! . "$VENV3DIR/bin/activate"; then
836 elif [[ "$2" == "go" ]]
838 go install -ldflags "$(go_ldflags)" "$WORKSPACE/$1"
839 elif [[ "$2" == "pip" ]]
841 # $3 can name a path directory for us to use, including trailing
842 # slash; e.g., the bin/ subdirectory of a virtualenv.
844 # Need to change to a different directory after creating
845 # the source dist package to avoid a pip bug.
846 # see https://arvados.org/issues/5766 for details.
848 # Also need to install twice, because if it believes the package is
849 # already installed, pip it won't install it. So the first "pip
850 # install" ensures that the dependencies are met, the second "pip
851 # install" ensures that we've actually installed the local package
854 && "${3}python3" setup.py sdist rotate --keep=1 --match .tar.gz \
856 && "${3}pip3" install --no-cache-dir "$WORKSPACE/$1/dist"/*.tar.gz \
857 && "${3}pip3" install --no-cache-dir --no-deps --ignore-installed "$WORKSPACE/$1/dist"/*.tar.gz
858 elif [[ "$2" != "" ]]
865 checkexit $result "$1 install"
866 title "install $1 -- `timer`"
870 bundle_install_trylocal() {
873 echo "(Running bundle install --local. 'could not find package' messages are OK.)"
874 if ! "$bundle" install --local --no-deployment; then
875 echo "(Running bundle install again, without --local.)"
876 "$bundle" install --no-deployment
883 cd "$WORKSPACE/doc" \
884 && bundle_install_trylocal \
891 with_test_gemset gem_uninstall_if_exists "$gemname" \
892 && cd "$WORKSPACE/$srcpath" \
893 && bundle_install_trylocal \
894 && gem build "$gemname.gemspec" \
895 && with_test_gemset gem install --no-document $(ls -t "$gemname"-*.gem|head -n1)
899 install_gem arvados sdk/ruby
903 if [[ "$NEED_SDK_R" = true ]]; then
904 cd "$WORKSPACE/sdk/R" \
905 && Rscript --vanilla install_deps.R
910 cd "$WORKSPACE/sdk/perl" \
911 && perl Makefile.PL INSTALL_BASE="$PERLINSTALLBASE" \
912 && make install INSTALLDIRS=perl
916 install_gem arvados-cli sdk/cli
919 install_services/login-sync() {
920 install_gem arvados-login-sync services/login-sync
923 install_services/api() {
925 check_arvados_config "services/api"
926 cd "$WORKSPACE/services/api" \
927 && RAILS_ENV=test bundle_install_trylocal \
930 rm -f config/environments/test.rb
931 cp config/environments/test.rb.example config/environments/test.rb
933 # Clear out any lingering postgresql connections to the test
934 # database, so that we can drop it. This assumes the current user
935 # is a postgresql superuser.
936 cd "$WORKSPACE/services/api" \
937 && test_database=$("${VENV3DIR}/bin/python3" -c "import yaml; print(yaml.safe_load(open('$ARVADOS_CONFIG','r'))['Clusters']['zzzzz']['PostgreSQL']['Connection']['dbname'])") \
938 && psql "$test_database" -c "SELECT pg_terminate_backend (pg_stat_activity.pid::int) FROM pg_stat_activity WHERE pg_stat_activity.datname = '$test_database';" 2>/dev/null
940 mkdir -p "$WORKSPACE/services/api/tmp/pids"
942 cert="$WORKSPACE/services/api/tmp/self-signed"
943 if [[ ! -e "$cert.pem" || "$(date -r "$cert.pem" +%s)" -lt 1512659226 ]]; then
945 dir="$WORKSPACE/services/api/tmp"
947 openssl req -newkey rsa:2048 -nodes -subj '/C=US/ST=State/L=City/CN=localhost' -out "$cert.csr" -keyout "$cert.key" </dev/null
948 openssl x509 -req -in "$cert.csr" -signkey "$cert.key" -out "$cert.pem" -days 3650 -extfile <(printf 'subjectAltName=DNS:localhost,DNS:::1,DNS:0.0.0.0,DNS:127.0.0.1,IP:::1,IP:0.0.0.0,IP:127.0.0.1')
952 cd "$WORKSPACE/services/api" \
954 && mkdir -p tmp/git \
956 && tar xf ../../test/test.git.tar \
957 && mkdir -p internal.git \
958 && git --git-dir internal.git init \
963 cd "$WORKSPACE/services/api"
964 export RAILS_ENV=test
965 if "$bundle" exec rails db:environment:set ; then
966 "$bundle" exec rake db:drop
968 "$bundle" exec rake db:setup
969 "$bundle" exec rake db:fixtures:load
973 declare -a pythonstuff
977 services/dockercleaner:py3
979 tools/crunchstat-summary:py3
983 gostuff=($(cd "$WORKSPACE" && git grep -lw func | grep \\.go | sed -e 's/\/[^\/]*$//' | sort -u))
985 install_apps/workbench() {
986 cd "$WORKSPACE/apps/workbench" \
987 && mkdir -p tmp/cache \
988 && RAILS_ENV=test bundle_install_trylocal \
989 && RAILS_ENV=test RAILS_GROUPS=assets "$bundle" exec rake npm:install
996 ARVADOS_API_HOST=pirca.arvadosapi.com
997 # Make sure python-epydoc is installed or the next line won't
999 PYTHONPATH=$WORKSPACE/sdk/python/ "$bundle" exec rake linkchecker baseurl=file://$WORKSPACE/doc/.site/ arvados_workbench_host=https://workbench.$ARVADOS_API_HOST arvados_api_host=$ARVADOS_API_HOST
1004 cd "$WORKSPACE" || return 1
1005 dirs=$(ls -d */ | egrep -v 'vendor|tmp')
1006 [[ -z "$(gofmt -e -d $dirs | tee -a /dev/stderr)" ]]
1009 test_services/api() {
1010 rm -f "$WORKSPACE/services/api/git-commit.version"
1011 cd "$WORKSPACE/services/api" \
1012 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake test TESTOPTS=\'-v -d\' ${testargs[services/api]}
1016 cd "$WORKSPACE/sdk/ruby" \
1017 && "$bundle" exec rake test TESTOPTS=-v ${testargs[sdk/ruby]}
1021 if [[ "$NEED_SDK_R" = true ]]; then
1022 cd "$WORKSPACE/sdk/R" \
1023 && Rscript --vanilla run_test.R
1028 cd "$WORKSPACE/sdk/cli" \
1029 && mkdir -p /tmp/keep \
1030 && KEEP_LOCAL_STORE=/tmp/keep "$bundle" exec rake test TESTOPTS=-v ${testargs[sdk/cli]}
1033 test_sdk/java-v2() {
1034 cd "$WORKSPACE/sdk/java-v2" && gradle test ${testargs[sdk/java-v2]}
1037 test_services/login-sync() {
1038 cd "$WORKSPACE/services/login-sync" \
1039 && "$bundle" exec rake test TESTOPTS=-v ${testargs[services/login-sync]}
1042 test_apps/workbench_units() {
1043 local TASK="test:units"
1044 cd "$WORKSPACE/apps/workbench" \
1045 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_units]}
1048 test_apps/workbench_functionals() {
1049 local TASK="test:functionals"
1050 cd "$WORKSPACE/apps/workbench" \
1051 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_functionals]}
1054 test_apps/workbench_integration() {
1055 local TASK="test:integration"
1056 cd "$WORKSPACE/apps/workbench" \
1057 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_integration]}
1060 test_apps/workbench_benchmark() {
1061 local TASK="test:benchmark"
1062 cd "$WORKSPACE/apps/workbench" \
1063 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} ${testargs[apps/workbench_benchmark]}
1066 test_apps/workbench_profile() {
1067 local TASK="test:profile"
1068 cd "$WORKSPACE/apps/workbench" \
1069 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} ${testargs[apps/workbench_profile]}
1073 # Install parts needed by test suites
1075 do_install cmd/arvados-server go
1078 do_install sdk/python pip "${VENV3DIR}/bin/"
1080 do_install services/api
1081 do_install services/arv-git-httpd go
1082 do_install services/keepproxy go
1083 do_install services/keepstore go
1084 do_install services/keep-web go
1085 do_install services/ws go
1095 do_install services/login-sync
1096 for p in "${pythonstuff[@]}"
1099 if [[ -z ${skip[python3]} ]]; then
1100 do_install ${dir} pip "$VENV3DIR/bin/"
1103 for g in "${gostuff[@]}"
1107 do_install services/api
1108 do_install apps/workbench
1113 do_test services/api
1115 # Shortcut for when we're only running apiserver tests. This saves a bit of time,
1116 # because we don't need to start up the api server for subsequent tests.
1117 if [ ! -z "$only" ] && [ "$only" == "services/api" ]; then
1118 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
1127 do_test services/login-sync
1129 for p in "${pythonstuff[@]}"
1132 if [[ -z ${skip[python3]} ]]; then
1133 do_test ${dir} pip "$VENV3DIR/bin/"
1137 for g in "${gostuff[@]}"
1141 do_test apps/workbench_units
1142 do_test apps/workbench_functionals
1143 do_test apps/workbench_integration
1144 do_test apps/workbench_benchmark
1145 do_test apps/workbench_profile
1148 help_interactive() {
1149 echo "== Interactive commands:"
1150 echo "TARGET (short for 'test DIR')"
1152 echo "10 test TARGET (run test 10 times)"
1153 echo "test TARGET:py3 (test with python3)"
1154 echo "test TARGET -check.vv (pass arguments to test)"
1155 echo "install TARGET"
1156 echo "install env (go/python libs)"
1157 echo "install deps (go/python libs + arvados components needed for integration tests)"
1158 echo "reset (...services used by integration tests)"
1160 echo "== Test targets:"
1161 echo "${!testfuncargs[@]}" | tr ' ' '\n' | sort | column
1166 declare -A testfuncargs=()
1167 for g in "${gostuff[@]}"; do
1168 testfuncargs[$g]="$g go"
1170 for p in "${pythonstuff[@]}"; do
1172 testfuncargs[$dir:py3]="$dir pip $VENV3DIR/bin/"
1175 testfuncargs["sdk/cli"]="sdk/cli"
1176 testfuncargs["sdk/R"]="sdk/R"
1177 testfuncargs["sdk/java-v2"]="sdk/java-v2"
1178 testfuncargs["apps/workbench_units"]="apps/workbench_units"
1179 testfuncargs["apps/workbench_functionals"]="apps/workbench_functionals"
1180 testfuncargs["apps/workbench_integration"]="apps/workbench_integration"
1181 testfuncargs["apps/workbench_benchmark"]="apps/workbench_benchmark"
1182 testfuncargs["apps/workbench_profile"]="apps/workbench_profile"
1184 if [[ -z ${interactive} ]]; then
1191 if [[ -e "$VENV3DIR/bin/activate" ]]; then stop_services; fi
1193 if [[ "$TERM" = dumb ]]; then
1194 # assume emacs, or something, is offering a history buffer
1195 # and pre-populating the command will only cause trouble
1197 elif [[ ! -e "$VENV3DIR/bin/activate" ]]; then
1198 nextcmd="install deps"
1205 nextcmd="install deps"
1207 HISTFILE="$WORKSPACE/tmp/.history"
1209 while read -p 'What next? ' -e -i "$nextcmd" nextcmd; do
1210 history -s "$nextcmd"
1213 if [[ "${nextcmd}" =~ ^[0-9] ]]; then
1214 read count nextcmd <<<"${nextcmd}"
1216 read verb target opts <<<"${nextcmd}"
1217 target="${target%/}"
1218 target="${target/\/:/:}"
1235 argstarget=${target%:py3}
1236 testargs["$argstarget"]="${opts}"
1237 tt="${testfuncargs[${target}]}"
1239 while [ $count -gt 0 ]; do
1250 if [[ ${#successes[@]} -gt 0 || ${#failures[@]} -gt 0 ]]; then