sdk/cwl/test_with_arvbox.sh

   1 #!/bin/sh
   2
   3 set -x
   4
   5 if ! which arvbox >/dev/null ; then
   6     export PATH=$PATH:$(readlink -f $(dirname $0)/../../tools/arvbox/bin)
   7 fi
   8
   9 reset_container=1
  10 leave_running=0
  11 config=dev
  12 docker_pull=1
  13 tag=""
  14
  15 while test -n "$1" ; do
  16     arg="$1"
  17     case "$arg" in
  18         --no-reset-container)
  19             reset_container=0
  20             shift
  21             ;;
  22         --leave-running)
  23             leave_running=1
  24             shift
  25             ;;
  26         --config)
  27             config=$2
  28             shift ; shift
  29             ;;
  30         --no-docker-pull)
  31             docker_pull=0
  32             shift
  33             ;;
  34         --tag)
  35             tag=$2
  36             shift ; shift
  37             ;;
  38         -h|--help)
  39             echo "$0 [--no-reset-container] [--leave-running] [--no-docker-pull] [--config dev|localdemo] [--tag docker_tag]"
  40             exit
  41             ;;
  42         *)
  43             break
  44             ;;
  45     esac
  46 done
  47
  48 if test -z "$ARVBOX_CONTAINER" ; then
  49    export ARVBOX_CONTAINER=cwltest
  50 fi
  51
  52 if test $reset_container = 1 ; then
  53     arvbox reset -f
  54 fi
  55
  56 arvbox start $config $tag
  57
  58 arvbox pipe <<EOF
  59 set -eu -o pipefail
  60
  61 . /usr/local/lib/arvbox/common.sh
  62
  63 cd /usr/src/arvados/sdk/cwl
  64 python setup.py sdist
  65 pip_install \$(ls -r dist/arvados-cwl-runner-*.tar.gz | head -n1)
  66
  67 mkdir -p /tmp/cwltest
  68 cd /tmp/cwltest
  69 if ! test -d common-workflow-language ; then
  70   git clone https://github.com/common-workflow-language/common-workflow-language.git
  71 fi
  72 cd common-workflow-language
  73 git pull
  74 export ARVADOS_API_HOST=localhost:8000
  75 export ARVADOS_API_HOST_INSECURE=1
  76 export ARVADOS_API_TOKEN=\$(cat /var/lib/arvados/superuser_token)
  77
  78 if test $docker_pull = 1 ; then
  79   arv-keepdocker --pull arvados/jobs $tag
  80 fi
  81
  82 cat >/tmp/cwltest/arv-cwl-jobs <<EOF2
  83 #!/bin/sh
  84 exec arvados-cwl-runner --api=jobs --compute-checksum \\\$@
  85 EOF2
  86 chmod +x /tmp/cwltest/arv-cwl-jobs
  87
  88 cat >/tmp/cwltest/arv-cwl-containers <<EOF2
  89 #!/bin/sh
  90 exec arvados-cwl-runner --api=containers --compute-checksum \\\$@
  91 EOF2
  92 chmod +x /tmp/cwltest/arv-cwl-containers
  93
  94 env
  95 exec ./run_test.sh $@
  96 EOF
  97
  98 CODE=$?
  99
 100 if test $leave_running = 0 ; then
 101     arvbox stop
 102 fi
 103
 104 exit $CODE