2 # Copyright (C) The Arvados Authors. All rights reserved.
4 # SPDX-License-Identifier: AGPL-3.0
6 . `dirname "$(readlink -f "$0")"`/libcloud-pin.sh
9 . `dirname "$(readlink -f "$0")"`/run-library.sh
11 read -rd "\000" helpmessage <<EOF
12 $(basename $0): Install and test Arvados components.
14 Exit non-zero if any tests fail.
17 $(basename $0) WORKSPACE=/path/to/arvados [options]
21 --skip FOO Do not test the FOO component.
22 --skip sanity Skip initial dev environment sanity checks.
23 --skip install Do not run any install steps. Just run tests.
24 You should provide GOPATH, GEMHOME, and VENVDIR options
25 from a previous invocation if you use this option.
26 --only FOO Do not test anything except the FOO component.
27 --temp DIR Install components and dependencies under DIR instead of
28 making a new temporary directory. Implies --leave-temp.
29 --leave-temp Do not remove GOPATH, virtualenv, and other temp dirs at exit.
30 Instead, show the path to give as --temp to reuse them in
31 subsequent invocations.
32 --repeat N Repeat each install/test step until it succeeds N times.
33 --retry Prompt to retry if an install or test suite fails.
34 --only-install Run specific install step
35 --short Skip (or scale down) some slow tests.
36 --interactive Set up, then prompt for test/install steps to perform.
37 WORKSPACE=path Arvados source tree to test.
38 CONFIGSRC=path Dir with config.yml file containing PostgreSQL section for use by tests. (required)
39 services/api_test="TEST=test/functional/arvados/v1/collections_controller_test.rb"
40 Restrict apiserver tests to the given file
41 sdk/python_test="--test-suite tests.test_keep_locator"
42 Restrict Python SDK tests to the given class
43 apps/workbench_test="TEST=test/integration/pipeline_instances_test.rb"
44 Restrict Workbench tests to the given file
45 services/arv-git-httpd_test="-check.vv"
46 Show all log messages, even when tests pass (also works
47 with services/keepstore_test etc.)
49 Print more debug messages
50 envvar=value Set \$envvar to value. Primarily useful for WORKSPACE,
51 *_test, and other examples shown above.
53 Assuming "--skip install" is not given, all components are installed
54 into \$GOPATH, \$VENDIR, and \$GEMHOME before running any tests. Many
55 test suites depend on other components being installed, and installing
56 everything tends to be quicker than debugging dependencies.
58 As a special concession to the current CI server config, CONFIGSRC
59 defaults to $HOME/arvados-api-server if that directory exists.
61 More information and background:
63 https://arvados.org/projects/arvados/wiki/Running_tests
68 apps/workbench_units (*)
69 apps/workbench_functionals (*)
70 apps/workbench_integration (*)
71 apps/workbench_benchmark
72 apps/workbench_profile
79 lib/controller/federation
80 lib/controller/railsproxy
88 lib/dispatchcloud/container
89 lib/dispatchcloud/scheduler
90 lib/dispatchcloud/ssh_executor
91 lib/dispatchcloud/worker
94 services/arv-git-httpd
96 services/dockercleaner
103 services/keep-balance
106 services/nodemanager_integration
108 services/crunch-dispatch-local
109 services/crunch-dispatch-slurm
133 tools/crunchstat-summary
134 tools/crunchstat-summary:py3
137 tools/keep-block-check
139 (*) apps/workbench is shorthand for apps/workbench_units +
140 apps/workbench_functionals + apps/workbench_integration
144 # First make sure to remove any ARVADOS_ variables from the calling
145 # environment that could interfere with the tests.
146 unset $(env | cut -d= -f1 | grep \^ARVADOS_)
148 # Reset other variables that could affect our [tests'] behavior by
158 export LANG=en_US.UTF-8
166 if [[ -z "$temp" ]]; then
167 # we didn't even get as far as making a temp dir
169 elif [[ -z "$temp_preserve" ]]; then
172 echo "Leaving behind temp dirs in $temp"
178 echo >&2 "Fatal: $* (encountered in ${FUNCNAME[1]} at ${BASH_SOURCE[1]} line ${BASH_LINENO[0]})"
184 if which create-plot-data-from-log.sh >/dev/null; then
185 create-plot-data-from-log.sh $BUILD_NUMBER "$WORKSPACE/apps/workbench/log/test.log" "$WORKSPACE/apps/workbench/log/"
187 rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
189 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
196 [[ -n "${skip[sanity]}" ]] && return 0
197 ( [[ -n "$WORKSPACE" ]] && [[ -d "$WORKSPACE/services" ]] ) \
198 || fatal "WORKSPACE environment variable not set to a source directory (see: $0 --help)"
199 [[ -n "$CONFIGSRC" ]] \
200 || fatal "CONFIGSRC environment not set (see: $0 --help)"
201 [[ -s "$CONFIGSRC/config.yml" ]] \
202 || fatal "'$CONFIGSRC/config.yml' is empty or not found (see: $0 --help)"
203 echo Checking dependencies:
204 echo "locale: ${LANG}"
205 [[ "$(locale charmap)" = "UTF-8" ]] \
206 || fatal "Locale '${LANG}' is broken/missing. Try: echo ${LANG} | sudo tee -a /etc/locale.gen && sudo locale-gen"
207 echo -n 'virtualenv: '
208 virtualenv --version \
209 || fatal "No virtualenv. Try: apt-get install virtualenv (on ubuntu: python-virtualenv)"
212 || fatal "No ruby. Install >=2.1.9 (using rbenv, rvm, or source)"
215 || fatal "No go binary. See http://golang.org/doc/install"
216 [[ $(go version) =~ go1.([0-9]+) ]] && [[ ${BASH_REMATCH[1]} -ge 12 ]] \
217 || fatal "Go >= 1.12 required. See http://golang.org/doc/install"
219 gcc --version | egrep ^gcc \
220 || fatal "No gcc. Try: apt-get install build-essential"
222 find /usr/include -path '*fuse/fuse.h' | egrep --max-count=1 . \
223 || fatal "No fuse/fuse.h. Try: apt-get install libfuse-dev"
225 find /usr/include -path '*gnutls/gnutls.h' | egrep --max-count=1 . \
226 || fatal "No gnutls/gnutls.h. Try: apt-get install libgnutls28-dev"
227 echo -n 'Python2 pyconfig.h: '
228 find /usr/include -path '*/python2*/pyconfig.h' | egrep --max-count=1 . \
229 || fatal "No Python2 pyconfig.h. Try: apt-get install python2.7-dev"
230 echo -n 'Python3 pyconfig.h: '
231 find /usr/include -path '*/python3*/pyconfig.h' | egrep --max-count=1 . \
232 || fatal "No Python3 pyconfig.h. Try: apt-get install python3-dev"
234 || fatal "No netstat. Try: apt-get install net-tools"
236 PATH="$PATH:/sbin:/usr/sbin:/usr/local/sbin" nginx -v \
237 || fatal "No nginx. Try: apt-get install nginx"
239 perl -v | grep version \
240 || fatal "No perl. Try: apt-get install perl"
241 for mod in ExtUtils::MakeMaker JSON LWP Net::SSL; do
242 echo -n "perl $mod: "
243 perl -e "use $mod; print \"\$$mod::VERSION\\n\"" \
244 || fatal "No $mod. Try: apt-get install perl-modules libcrypt-ssleay-perl libjson-perl libwww-perl"
248 || fatal "No gitolite. Try: apt-get install gitolite3"
251 || fatal "No npm. Try: wget -O- https://nodejs.org/dist/v6.11.2/node-v6.11.2-linux-x64.tar.xz | sudo tar -C /usr/local -xJf - && sudo ln -s ../node-v6.11.2-linux-x64/bin/{node,npm} /usr/local/bin/"
253 cadaver --version | grep -w cadaver \
254 || fatal "No cadaver. Try: apt-get install cadaver"
255 echo -n 'libattr1 xattr.h: '
256 find /usr/include -path '*/attr/xattr.h' | egrep --max-count=1 . \
257 || fatal "No libattr1 xattr.h. Try: apt-get install libattr1-dev"
258 echo -n 'libcurl curl.h: '
259 find /usr/include -path '*/curl/curl.h' | egrep --max-count=1 . \
260 || fatal "No libcurl curl.h. Try: apt-get install libcurl4-gnutls-dev"
261 echo -n 'libpq libpq-fe.h: '
262 find /usr/include -path '*/postgresql/libpq-fe.h' | egrep --max-count=1 . \
263 || fatal "No libpq libpq-fe.h. Try: apt-get install libpq-dev"
264 echo -n 'postgresql: '
265 psql --version || fatal "No postgresql. Try: apt-get install postgresql postgresql-client-common"
266 echo -n 'phantomjs: '
267 phantomjs --version || fatal "No phantomjs. Try: apt-get install phantomjs"
269 which Xvfb || fatal "No xvfb. Try: apt-get install xvfb"
271 dot -V || fatal "No graphviz. Try: apt-get install graphviz"
272 echo -n 'geckodriver: '
273 geckodriver --version | grep ^geckodriver || echo "No geckodriver. Try: wget -O- https://github.com/mozilla/geckodriver/releases/download/v0.23.0/geckodriver-v0.23.0-linux64.tar.gz | sudo tar -C /usr/local/bin -xzf - geckodriver"
275 if [[ "$NEED_SDK_R" = true ]]; then
278 which Rscript || fatal "No Rscript. Try: apt-get install r-base"
280 Rscript -e "library('testthat')" || fatal "No testthat. Try: apt-get install r-cran-testthat"
281 # needed for roxygen2, needed for devtools, needed for R sdk
282 pkg-config --exists libxml-2.0 || fatal "No libxml2. Try: apt-get install libxml2-dev"
283 # needed for pkgdown, builds R SDK doc pages
284 which pandoc || fatal "No pandoc. Try: apt-get install pandoc"
286 echo 'procs with /dev/fuse open:'
287 find /proc/*/fd -lname /dev/fuse 2>/dev/null | cut -d/ -f3 | xargs --no-run-if-empty ps -lywww
288 echo 'grep fuse /proc/self/mountinfo:'
289 grep fuse /proc/self/mountinfo
293 # i.e. rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
294 # $BUILD_NUMBER is set by Jenkins if this script is being called as part of a Jenkins run
295 if [[ -f "$1/$2" ]]; then
296 THEDATE=`date +%Y%m%d%H%M%S`
297 mv "$1/$2" "$1/$THEDATE-$BUILD_NUMBER-$2"
298 gzip "$1/$THEDATE-$BUILD_NUMBER-$2"
306 skip[apps/workbench_profile]=1
307 # nodemanager_integration tests are not reliable, see #12061.
308 skip[services/nodemanager_integration]=1
315 echo >&2 "$helpmessage"
323 only[$1]=1; skip[$1]=""; shift
335 only_install="$1"; shift
345 repeat=$((${1}+0)); shift
351 suite="${arg%%_test=*}"
353 testargs["$suite"]="$args"
356 eval export $(echo $arg | cut -d= -f1)=\"$(echo $arg | cut -d= -f2-)\"
359 echo >&2 "$0: Unrecognized option: '$arg'. Try: $0 --help"
365 # R SDK installation is very slow (~360s in a clean environment) and only
366 # required when testing it. Skip that step if it is not needed.
369 if [[ ${#only[@]} -ne 0 ]] &&
370 [[ -z "${only['sdk/R']}" && -z "${only['doc']}" ]]; then
374 if [[ ${skip["sdk/R"]} == 1 && ${skip["doc"]} == 1 ]]; then
378 if [[ $NEED_SDK_R == false ]]; then
379 echo "R SDK not needed, it will not be installed."
384 pid="$(cat "$WORKSPACE/tmp/${svc}.pid")"
385 if [[ -z "$pid" ]] || ! kill -0 "$pid"; then
386 tail $WORKSPACE/tmp/${1}*.log
387 echo "${svc} pid ${pid} not running"
390 echo "${svc} pid ${pid} ok"
395 base=$(python -c "import yaml; print list(yaml.safe_load(file('$ARVADOS_CONFIG'))['Clusters']['zzzzz']['Services']['$1']['InternalURLs'].keys())[0]")
396 url="$base/_health/ping"
397 if ! curl -Ss -H "Authorization: Bearer e687950a23c3a9bceec28c6223a06c79" "${url}" | tee -a /dev/stderr | grep '"OK"'; then
403 checkdiscoverydoc() {
404 dd="https://${1}/discovery/v1/apis/arvados/v1/rest"
405 if ! (set -o pipefail; curl -fsk "$dd" | grep -q ^{ ); then
406 echo >&2 "ERROR: could not retrieve discovery doc from RailsAPI at $dd"
407 tail -v $WORKSPACE/services/api/log/test.log
414 if [[ -n "$ARVADOS_TEST_API_HOST" ]]; then
417 . "$VENVDIR/bin/activate"
418 echo 'Starting API, controller, keepproxy, keep-web, arv-git-httpd, ws, and nginx ssl proxy...'
419 if [[ ! -d "$WORKSPACE/services/api/log" ]]; then
420 mkdir -p "$WORKSPACE/services/api/log"
422 # Remove empty api.pid file if it exists
423 if [[ -f "$WORKSPACE/tmp/api.pid" && ! -s "$WORKSPACE/tmp/api.pid" ]]; then
424 rm -f "$WORKSPACE/tmp/api.pid"
426 all_services_stopped=
430 && eval $(python sdk/python/tests/run_test_server.py start --auth admin) \
431 && export ARVADOS_TEST_API_HOST="$ARVADOS_API_HOST" \
432 && export ARVADOS_TEST_API_INSTALLED="$$" \
433 && checkpidfile api \
434 && checkdiscoverydoc $ARVADOS_API_HOST \
435 && eval $(python sdk/python/tests/run_test_server.py start_nginx) \
436 && checkpidfile nginx \
437 && python sdk/python/tests/run_test_server.py start_controller \
438 && checkpidfile controller \
439 && checkhealth Controller \
440 && checkdiscoverydoc $ARVADOS_API_HOST \
441 && python sdk/python/tests/run_test_server.py start_keep_proxy \
442 && checkpidfile keepproxy \
443 && python sdk/python/tests/run_test_server.py start_keep-web \
444 && checkpidfile keep-web \
445 && checkhealth WebDAV \
446 && python sdk/python/tests/run_test_server.py start_arv-git-httpd \
447 && checkpidfile arv-git-httpd \
448 && checkhealth GitHTTP \
449 && python sdk/python/tests/run_test_server.py start_ws \
451 && export ARVADOS_TEST_PROXY_SERVICES=1 \
452 && (env | egrep ^ARVADOS) \
455 if [[ $fail != 0 ]]; then
456 unset ARVADOS_TEST_API_HOST
462 if [[ -n "$all_services_stopped" ]]; then
465 unset ARVADOS_TEST_API_HOST ARVADOS_TEST_PROXY_SERVICES
466 . "$VENVDIR/bin/activate" || return
468 && python sdk/python/tests/run_test_server.py stop_nginx \
469 && python sdk/python/tests/run_test_server.py stop_arv-git-httpd \
470 && python sdk/python/tests/run_test_server.py stop_ws \
471 && python sdk/python/tests/run_test_server.py stop_keep-web \
472 && python sdk/python/tests/run_test_server.py stop_keep_proxy \
473 && python sdk/python/tests/run_test_server.py stop_controller \
474 && python sdk/python/tests/run_test_server.py stop \
475 && all_services_stopped=1
481 failures+=("($(basename $0) interrupted)")
486 setup_ruby_environment() {
487 if [[ -s "$HOME/.rvm/scripts/rvm" ]] ; then
488 source "$HOME/.rvm/scripts/rvm"
490 elif [[ -s "/usr/local/rvm/scripts/rvm" ]] ; then
491 source "/usr/local/rvm/scripts/rvm"
497 if [[ "$using_rvm" == true ]]; then
498 # If rvm is in use, we can't just put separate "dependencies"
499 # and "gems-under-test" paths to GEM_PATH: passenger resets
500 # the environment to the "current gemset", which would lose
501 # our GEM_PATH and prevent our test suites from running ruby
502 # programs (for example, the Workbench test suite could not
503 # boot an API server or run arv). Instead, we have to make an
504 # rvm gemset and use it for everything.
506 [[ `type rvm | head -n1` == "rvm is a function" ]] \
509 # Put rvm's favorite path back in first place (overriding
510 # virtualenv, which just put itself there). Ignore rvm's
511 # complaint about not being in first place already.
512 rvm use @default 2>/dev/null
514 # Create (if needed) and switch to an @arvados-tests-* gemset,
515 # salting the gemset name so it doesn't interfere with
516 # concurrent builds in other workspaces. Leave the choice of
517 # ruby to the caller.
518 gemset="arvados-tests-$(echo -n "${WORKSPACE}" | md5sum | head -c16)"
519 rvm use "@${gemset}" --create \
520 || fatal 'rvm gemset setup'
524 # When our "bundle install"s need to install new gems to
525 # satisfy dependencies, we want them to go where "gem install
526 # --user-install" would put them. (However, if the caller has
527 # already set GEM_HOME, we assume that's where dependencies
528 # should be installed, and we should leave it alone.)
530 if [ -z "$GEM_HOME" ]; then
531 user_gempath="$(gem env gempath)"
532 export GEM_HOME="${user_gempath%%:*}"
534 PATH="$(gem env gemdir)/bin:$PATH"
536 # When we build and install our own gems, we install them in our
537 # $GEMHOME tmpdir, and we want them to be at the front of GEM_PATH and
538 # PATH so integration tests prefer them over other versions that
539 # happen to be installed in $user_gempath, system dirs, etc.
541 tmpdir_gem_home="$(env - PATH="$PATH" HOME="$GEMHOME" gem env gempath | cut -f1 -d:)"
542 PATH="$tmpdir_gem_home/bin:$PATH"
543 export GEM_PATH="$tmpdir_gem_home"
545 echo "Will install dependencies to $(gem env gemdir)"
546 echo "Will install arvados gems to $tmpdir_gem_home"
547 echo "Gem search path is GEM_PATH=$GEM_PATH"
549 bundle config || gem install bundler \
550 || fatal 'install bundler'
554 if [[ "$using_rvm" == true ]]; then
557 GEM_HOME="$tmpdir_gem_home" GEM_PATH="$tmpdir_gem_home" "$@"
561 gem_uninstall_if_exists() {
562 if gem list "$1\$" | egrep '^\w'; then
563 gem uninstall --force --all --executables "$1"
568 local venvdest="$1"; shift
569 if ! [[ -e "$venvdest/bin/activate" ]] || ! [[ -e "$venvdest/bin/pip" ]]; then
570 virtualenv --setuptools "$@" "$venvdest" || fatal "virtualenv $venvdest failed"
571 elif [[ -n "$short" ]]; then
574 if [[ $("$venvdest/bin/python" --version 2>&1) =~ \ 3\.[012]\. ]]; then
575 # pip 8.0.0 dropped support for python 3.2, e.g., debian wheezy
576 "$venvdest/bin/pip" install --no-cache-dir 'setuptools>=18.5' 'pip>=7,<8'
578 "$venvdest/bin/pip" install --no-cache-dir 'setuptools>=18.5' 'pip>=7'
585 echo "WORKSPACE=$WORKSPACE"
587 # Clean up .pyc files that may exist in the workspace
589 find -name '*.pyc' -delete
591 if [[ -z "$temp" ]]; then
595 # Set up temporary install dirs (unless existing dirs were supplied)
596 for tmpdir in VENVDIR VENV3DIR GOPATH GEMHOME PERLINSTALLBASE R_LIBS
598 if [[ -z "${!tmpdir}" ]]; then
599 eval "$tmpdir"="$temp/$tmpdir"
601 if ! [[ -d "${!tmpdir}" ]]; then
602 mkdir "${!tmpdir}" || fatal "can't create ${!tmpdir} (does $temp exist?)"
606 rm -vf "${WORKSPACE}/tmp/*.log"
608 export PERLINSTALLBASE
609 export PERL5LIB="$PERLINSTALLBASE/lib/perl5${PERL5LIB:+:$PERL5LIB}"
614 # Make sure our compiled binaries under test override anything
615 # else that might be in the environment.
616 export PATH=$GOPATH/bin:$PATH
618 # Jenkins config requires that glob tmp/*.log match something. Ensure
619 # that happens even if we don't end up running services that set up
621 mkdir -p "${WORKSPACE}/tmp/" || fatal "could not mkdir ${WORKSPACE}/tmp"
622 touch "${WORKSPACE}/tmp/controller.log" || fatal "could not touch ${WORKSPACE}/tmp/controller.log"
624 unset http_proxy https_proxy no_proxy
626 # Note: this must be the last time we change PATH, otherwise rvm will
628 setup_ruby_environment
634 go mod download || fatal "Go deps failed"
635 which goimports >/dev/null || go get golang.org/x/tools/cmd/goimports || fatal "Go setup failed"
637 setup_virtualenv "$VENVDIR" --python python2.7
638 . "$VENVDIR/bin/activate"
640 # Needed for run_test_server.py which is used by certain (non-Python) tests.
641 pip install --no-cache-dir PyYAML future \
642 || fatal "pip install PyYAML failed"
644 # Preinstall libcloud if using a fork; otherwise nodemanager "pip
645 # install" won't pick it up by default.
646 if [[ -n "$LIBCLOUD_PIN_SRC" ]]; then
647 pip freeze 2>/dev/null | egrep ^apache-libcloud==$LIBCLOUD_PIN \
648 || pip install --pre --ignore-installed --no-cache-dir "$LIBCLOUD_PIN_SRC" >/dev/null \
649 || fatal "pip install apache-libcloud failed"
652 # Deactivate Python 2 virtualenv
655 # If Python 3 is available, set up its virtualenv in $VENV3DIR.
656 # Otherwise, skip dependent tests.
657 PYTHON3=$(which python3)
658 if [[ ${?} = 0 ]]; then
659 setup_virtualenv "$VENV3DIR" --python python3
664 Warning: python3 could not be found. Python 3 tests will be skipped.
669 if ! which bundler >/dev/null
671 gem install --user-install bundler || fatal 'Could not install bundler'
680 if [[ "$remain" -gt 1 ]]; then
681 remain=$((${remain}-1))
682 title "(repeating ${remain} more times)"
686 elif [[ "$retry" == 1 ]]; then
687 read -p 'Try again? [Y/n] ' x
688 if [[ "$x" != "y" ]] && [[ "$x" != "" ]]
700 apps/workbench_units | apps/workbench_functionals | apps/workbench_integration)
703 services/nodemanager | services/nodemanager_integration)
704 suite=services/nodemanager_suite
710 if [[ -n "${skip[$suite]}" || \
711 -n "${skip[$1]}" || \
712 (${#only[@]} -ne 0 && ${only[$suite]} -eq 0 && ${only[$1]} -eq 0) ]]; then
718 check_arvados_config "$1"
720 gofmt | doc | lib/cli | lib/cloud/azure | lib/cloud/ec2 | lib/cloud/cloudtest | lib/cmd | lib/dispatchcloud/ssh_executor | lib/dispatchcloud/worker)
721 check_arvados_config "$1"
722 # don't care whether services are running
725 check_arvados_config "$1"
726 if ! start_services; then
727 checkexit 1 "$1 tests"
728 title "test $1 -- failed to start services"
733 retry do_test_once ${@}
737 version=${ARVADOS_VERSION:-$(git log -n1 --format=%H)-dev}
738 echo "-X git.curoverse.com/arvados.git/lib/cmd.version=${version} -X main.version=${version}"
748 if which deactivate >/dev/null; then deactivate; fi
749 if ! . "$VENVDIR/bin/activate"
752 elif [[ "$2" == "go" ]]
754 covername="coverage-$(echo "$1" | sed -e 's/\//_/g')"
755 coverflags=("-covermode=count" "-coverprofile=$WORKSPACE/tmp/.$covername.tmp")
756 # We do "go install" here to catch compilation errors
757 # before trying "go test". Otherwise, coverage-reporting
758 # mode makes Go show the wrong line numbers when reporting
759 # compilation errors.
760 go install -ldflags "$(go_ldflags)" "$WORKSPACE/$1" && \
761 cd "$WORKSPACE/$1" && \
762 if [[ -n "${testargs[$1]}" ]]
764 # "go test -check.vv giturl" doesn't work, but this
766 go test ${short:+-short} ${testargs[$1]}
768 # The above form gets verbose even when testargs is
769 # empty, so use this form in such cases:
770 go test ${short:+-short} ${coverflags[@]} "git.curoverse.com/arvados.git/$1"
773 if [[ -f "$WORKSPACE/tmp/.$covername.tmp" ]]
775 go tool cover -html="$WORKSPACE/tmp/.$covername.tmp" -o "$WORKSPACE/tmp/$covername.html"
776 rm "$WORKSPACE/tmp/.$covername.tmp"
778 [[ $result = 0 ]] && gofmt -e -d *.go
779 elif [[ "$2" == "pip" ]]
782 cd "$WORKSPACE/$1" && while :
784 tries=$((${tries}+1))
785 # $3 can name a path directory for us to use, including trailing
786 # slash; e.g., the bin/ subdirectory of a virtualenv.
787 if [[ -e "${3}activate" ]]; then
790 python setup.py ${short:+--short-tests-only} test ${testargs[$1]}
792 if [[ ${tries} < 3 && ${result} == 137 ]]
794 printf '\n*****\n%s tests killed -- retrying\n*****\n\n' "$1"
800 elif [[ "$2" != "" ]]
807 checkexit $result "$1 tests"
808 title "test $1 -- `timer`"
812 check_arvados_config() {
813 if [[ "$1" = "env" ]] ; then
816 if [[ -z "$ARVADOS_CONFIG" ]] ; then
817 # Create config file. The run_test_server script requires PyYAML,
818 # so virtualenv needs to be active. Downstream steps like
819 # workbench install which require a valid config.yml.
820 if [[ ! -s "$VENVDIR/bin/activate" ]] ; then
823 . "$VENVDIR/bin/activate"
825 eval $(python sdk/python/tests/run_test_server.py setup_config)
831 if [[ -n "${skip[install]}" || ( -n "${only_install}" && "${only_install}" != "${1}" && "${only_install}" != "${2}" ) ]]; then
834 check_arvados_config "$1"
835 retry do_install_once ${@}
843 if which deactivate >/dev/null; then deactivate; fi
844 if [[ "$1" != "env" ]] && ! . "$VENVDIR/bin/activate"; then
846 elif [[ "$2" == "go" ]]
848 go install -ldflags "$(go_ldflags)" "$WORKSPACE/$1"
849 elif [[ "$2" == "pip" ]]
851 # $3 can name a path directory for us to use, including trailing
852 # slash; e.g., the bin/ subdirectory of a virtualenv.
854 # Need to change to a different directory after creating
855 # the source dist package to avoid a pip bug.
856 # see https://arvados.org/issues/5766 for details.
858 # Also need to install twice, because if it believes the package is
859 # already installed, pip it won't install it. So the first "pip
860 # install" ensures that the dependencies are met, the second "pip
861 # install" ensures that we've actually installed the local package
864 && "${3}python" setup.py sdist rotate --keep=1 --match .tar.gz \
866 && "${3}pip" install --no-cache-dir --quiet "$WORKSPACE/$1/dist"/*.tar.gz \
867 && "${3}pip" install --no-cache-dir --quiet --no-deps --ignore-installed "$WORKSPACE/$1/dist"/*.tar.gz
868 elif [[ "$2" != "" ]]
875 checkexit $result "$1 install"
876 title "install $1 -- `timer`"
880 bundle_install_trylocal() {
883 echo "(Running bundle install --local. 'could not find package' messages are OK.)"
884 if ! bundle install --local --no-deployment; then
885 echo "(Running bundle install again, without --local.)"
886 bundle install --no-deployment
893 cd "$WORKSPACE/doc" \
894 && bundle_install_trylocal \
901 with_test_gemset gem_uninstall_if_exists "$gemname" \
902 && cd "$WORKSPACE/$srcpath" \
903 && bundle_install_trylocal \
904 && gem build "$gemname.gemspec" \
905 && with_test_gemset gem install --no-document $(ls -t "$gemname"-*.gem|head -n1)
909 install_gem arvados sdk/ruby
913 if [[ "$NEED_SDK_R" = true ]]; then
914 cd "$WORKSPACE/sdk/R" \
915 && Rscript --vanilla install_deps.R
920 cd "$WORKSPACE/sdk/perl" \
921 && perl Makefile.PL INSTALL_BASE="$PERLINSTALLBASE" \
922 && make install INSTALLDIRS=perl
926 install_gem arvados-cli sdk/cli
929 install_services/login-sync() {
930 install_gem arvados-login-sync services/login-sync
933 install_services/api() {
935 cd "$WORKSPACE/services/api" \
936 && RAILS_ENV=test bundle_install_trylocal
938 rm -f config/environments/test.rb
939 cp config/environments/test.rb.example config/environments/test.rb
941 # Clear out any lingering postgresql connections to the test
942 # database, so that we can drop it. This assumes the current user
943 # is a postgresql superuser.
944 cd "$WORKSPACE/services/api" \
945 && test_database=$(python -c "import yaml; print yaml.safe_load(file('$ARVADOS_CONFIG'))['Clusters']['zzzzz']['PostgreSQL']['Connection']['dbname']") \
946 && psql "$test_database" -c "SELECT pg_terminate_backend (pg_stat_activity.pid::int) FROM pg_stat_activity WHERE pg_stat_activity.datname = '$test_database';" 2>/dev/null
948 mkdir -p "$WORKSPACE/services/api/tmp/pids"
950 cert="$WORKSPACE/services/api/tmp/self-signed"
951 if [[ ! -e "$cert.pem" || "$(date -r "$cert.pem" +%s)" -lt 1512659226 ]]; then
953 dir="$WORKSPACE/services/api/tmp"
955 openssl req -newkey rsa:2048 -nodes -subj '/C=US/ST=State/L=City/CN=localhost' -out "$cert.csr" -keyout "$cert.key" </dev/null
956 openssl x509 -req -in "$cert.csr" -signkey "$cert.key" -out "$cert.pem" -days 3650 -extfile <(printf 'subjectAltName=DNS:localhost,DNS:::1,DNS:0.0.0.0,DNS:127.0.0.1,IP:::1,IP:0.0.0.0,IP:127.0.0.1')
960 cd "$WORKSPACE/services/api" \
962 && mkdir -p tmp/git \
964 && tar xf ../../test/test.git.tar \
965 && mkdir -p internal.git \
966 && git --git-dir internal.git init \
970 (cd "$WORKSPACE/services/api"
971 export RAILS_ENV=test
972 if bundle exec rails db:environment:set ; then
973 bundle exec rake db:drop
975 bundle exec rake db:setup \
976 && bundle exec rake db:fixtures:load
980 declare -a pythonstuff
987 services/dockercleaner:py3
991 tools/crunchstat-summary
992 tools/crunchstat-summary:py3
996 gostuff=($(cd "$WORKSPACE" && git grep -lw func | grep \\.go | sed -e 's/\/[^\/]*$//' | sort -u))
998 install_apps/workbench() {
999 cd "$WORKSPACE/apps/workbench" \
1000 && mkdir -p tmp/cache \
1001 && RAILS_ENV=test bundle_install_trylocal \
1002 && RAILS_ENV=test RAILS_GROUPS=assets bundle exec rake npm:install
1009 ARVADOS_API_HOST=qr1hi.arvadosapi.com
1010 # Make sure python-epydoc is installed or the next line won't
1012 PYTHONPATH=$WORKSPACE/sdk/python/ bundle exec rake linkchecker baseurl=file://$WORKSPACE/doc/.site/ arvados_workbench_host=https://workbench.$ARVADOS_API_HOST arvados_api_host=$ARVADOS_API_HOST
1017 cd "$WORKSPACE" || return 1
1018 dirs=$(ls -d */ | egrep -v 'vendor|tmp')
1019 [[ -z "$(gofmt -e -d $dirs | tee -a /dev/stderr)" ]]
1022 test_services/api() {
1023 rm -f "$WORKSPACE/services/api/git-commit.version"
1024 cd "$WORKSPACE/services/api" \
1025 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test TESTOPTS=\'-v -d\' ${testargs[services/api]}
1029 cd "$WORKSPACE/sdk/ruby" \
1030 && bundle exec rake test TESTOPTS=-v ${testargs[sdk/ruby]}
1034 if [[ "$NEED_SDK_R" = true ]]; then
1035 cd "$WORKSPACE/sdk/R" \
1036 && Rscript --vanilla run_test.R
1041 cd "$WORKSPACE/sdk/cli" \
1042 && mkdir -p /tmp/keep \
1043 && KEEP_LOCAL_STORE=/tmp/keep bundle exec rake test TESTOPTS=-v ${testargs[sdk/cli]}
1046 test_sdk/java-v2() {
1047 cd "$WORKSPACE/sdk/java-v2" && gradle test
1050 test_services/login-sync() {
1051 cd "$WORKSPACE/services/login-sync" \
1052 && bundle exec rake test TESTOPTS=-v ${testargs[services/login-sync]}
1055 test_services/nodemanager_integration() {
1056 cd "$WORKSPACE/services/nodemanager" \
1057 && tests/integration_test.py ${testargs[services/nodemanager_integration]}
1060 test_apps/workbench_units() {
1061 local TASK="test:units"
1062 cd "$WORKSPACE/apps/workbench" \
1063 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_units]}
1066 test_apps/workbench_functionals() {
1067 local TASK="test:functionals"
1068 cd "$WORKSPACE/apps/workbench" \
1069 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_functionals]}
1072 test_apps/workbench_integration() {
1073 local TASK="test:integration"
1074 cd "$WORKSPACE/apps/workbench" \
1075 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_integration]}
1078 test_apps/workbench_benchmark() {
1079 local TASK="test:benchmark"
1080 cd "$WORKSPACE/apps/workbench" \
1081 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake ${TASK} ${testargs[apps/workbench_benchmark]}
1084 test_apps/workbench_profile() {
1085 local TASK="test:profile"
1086 cd "$WORKSPACE/apps/workbench" \
1087 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake ${TASK} ${testargs[apps/workbench_profile]}
1091 # Install parts needed by test suites
1093 do_install cmd/arvados-server go
1096 do_install sdk/python pip
1098 do_install services/api
1099 do_install services/arv-git-httpd go
1100 do_install services/keepproxy go
1101 do_install services/keepstore go
1102 do_install services/keep-web go
1103 do_install services/ws go
1113 do_install services/login-sync
1114 for p in "${pythonstuff[@]}"
1117 if [[ ${dir} = ${p} ]]; then
1118 if [[ -z ${skip[python2]} ]]; then
1119 do_install ${dir} pip
1121 elif [[ -n ${PYTHON3} ]]; then
1122 if [[ -z ${skip[python3]} ]]; then
1123 do_install ${dir} pip "$VENV3DIR/bin/"
1127 for g in "${gostuff[@]}"
1131 do_install services/api
1132 do_install apps/workbench
1137 do_test services/api
1139 # Shortcut for when we're only running apiserver tests. This saves a bit of time,
1140 # because we don't need to start up the api server for subsequent tests.
1141 if [ ! -z "$only" ] && [ "$only" == "services/api" ]; then
1142 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
1151 do_test services/login-sync
1153 do_test services/nodemanager_integration
1154 for p in "${pythonstuff[@]}"
1157 if [[ ${dir} = ${p} ]]; then
1158 if [[ -z ${skip[python2]} ]]; then
1161 elif [[ -n ${PYTHON3} ]]; then
1162 if [[ -z ${skip[python3]} ]]; then
1163 do_test ${dir} pip "$VENV3DIR/bin/"
1168 for g in "${gostuff[@]}"
1172 do_test apps/workbench_units
1173 do_test apps/workbench_functionals
1174 do_test apps/workbench_integration
1175 do_test apps/workbench_benchmark
1176 do_test apps/workbench_profile
1179 help_interactive() {
1180 echo "== Interactive commands:"
1181 echo "TARGET (short for 'test DIR')"
1183 echo "test TARGET:py3 (test with python3)"
1184 echo "test TARGET -check.vv (pass arguments to test)"
1185 echo "install TARGET"
1186 echo "install env (go/python libs)"
1187 echo "install deps (go/python libs + arvados components needed for integration tests)"
1188 echo "reset (...services used by integration tests)"
1190 echo "== Test targets:"
1191 echo "${!testfuncargs[@]}" | tr ' ' '\n' | sort | column
1196 declare -A testfuncargs=()
1197 for g in "${gostuff[@]}"; do
1198 testfuncargs[$g]="$g go"
1200 for p in "${pythonstuff[@]}"; do
1202 testfuncargs[$dir]="$dir pip $VENVDIR/bin/"
1203 testfuncargs[$dir:py3]="$dir pip $VENV3DIR/bin/"
1206 testfuncargs["sdk/cli"]="sdk/cli"
1207 testfuncargs["sdk/R"]="sdk/R"
1208 testfuncargs["sdk/java-v2"]="sdk/java-v2"
1209 testfuncargs["apps/workbench_units"]="apps/workbench_units"
1210 testfuncargs["apps/workbench_functionals"]="apps/workbench_functionals"
1211 testfuncargs["apps/workbench_integration"]="apps/workbench_integration"
1212 testfuncargs["apps/workbench_benchmark"]="apps/workbench_benchmark"
1213 testfuncargs["apps/workbench_profile"]="apps/workbench_profile"
1215 if [[ -z ${interactive} ]]; then
1222 if [[ -e "$VENVDIR/bin/activate" ]]; then stop_services; fi
1224 if [[ "$TERM" = dumb ]]; then
1225 # assume emacs, or something, is offering a history buffer
1226 # and pre-populating the command will only cause trouble
1228 elif [[ ! -e "$VENVDIR/bin/activate" ]]; then
1229 nextcmd="install deps"
1236 nextcmd="install deps"
1238 HISTFILE="$WORKSPACE/tmp/.history"
1240 while read -p 'What next? ' -e -i "$nextcmd" nextcmd; do
1241 history -s "$nextcmd"
1243 read verb target opts <<<"${nextcmd}"
1244 target="${target%/}"
1245 target="${target/\/:/:}"
1262 testargs["$target"]="${opts}"
1263 tt="${testfuncargs[${target}]}"
1273 if [[ ${#successes[@]} -gt 0 || ${#failures[@]} -gt 0 ]]; then