Merge branch 'crunch-job_finds_newer_docker_hashes' of https://github.com/tmooney...
[arvados.git] / doc / _config.yml
1 # baseurl is the location of the generated site from the browser's
2 # perspective (e.g., http://doc.arvados.org or
3 # file:///tmp/arvados/doc/.site). To make docs show up inside
4 # workbench, use /doc here and add a symlink at
5 # apps/workbench/public/doc pointing to ../../../doc/.site
6 # You can also set these on the command line:
7 # $ rake generate baseurl=/example arvados_api_host=example.com
8
9 baseurl:
10 arvados_api_host: localhost
11 arvados_workbench_host: http://localhost
12
13 exclude: ["Rakefile", "tmp", "vendor"]
14
15 navbar:
16   #start:
17     #- Getting Started:
18       #- start/index.html.textile.liquid
19     #- Quickstart:
20       #- start/getting_started/publicproject.html.textile.liquid
21       #- start/getting_started/firstpipeline.html.textile.liquid
22     #- Common Use Cases:
23       #- start/getting_started/sharedata.html.textile.liquid
24     #- Next Steps:
25       #- start/getting_started/nextsteps.html.textile.liquid
26
27   userguide:
28     - Welcome:
29       - user/index.html.textile.liquid
30       - user/getting_started/community.html.textile.liquid
31     - Run a pipeline using Workbench:
32       - user/getting_started/workbench.html.textile.liquid
33       - user/tutorials/tutorial-pipeline-workbench.html.textile.liquid
34     - Access an Arvados virtual machine:
35       - user/getting_started/vm-login-with-webshell.html.textile.liquid
36       - user/getting_started/ssh-access-unix.html.textile.liquid
37       - user/getting_started/ssh-access-windows.html.textile.liquid
38       - user/getting_started/check-environment.html.textile.liquid
39       - user/reference/api-tokens.html.textile.liquid
40     - Working with data sets:
41       - user/tutorials/tutorial-keep.html.textile.liquid
42       - user/tutorials/tutorial-keep-get.html.textile.liquid
43       - user/tutorials/tutorial-keep-mount.html.textile.liquid
44       - user/topics/keep.html.textile.liquid
45       - user/topics/arv-copy.html.textile.liquid
46     - Using Common Workflow Language:
47       - user/cwl/cwl-runner.html.textile.liquid
48       - user/cwl/cwl-style.html.textile.liquid
49     - Working on the command line:
50       - user/topics/running-pipeline-command-line.html.textile.liquid
51       - user/topics/arv-run.html.textile.liquid
52     - Working with git repositories:
53       - user/tutorials/add-new-repository.html.textile.liquid
54       - user/tutorials/git-arvados-guide.html.textile.liquid
55     - Develop an Arvados pipeline:
56       - user/tutorials/intro-crunch.html.textile.liquid
57       - user/tutorials/running-external-program.html.textile.liquid
58       - user/topics/crunch-tools-overview.html.textile.liquid
59       - user/tutorials/tutorial-firstscript.html.textile.liquid
60       - user/tutorials/tutorial-submit-job.html.textile.liquid
61       - user/topics/tutorial-parallel.html.textile.liquid
62       - user/topics/arv-docker.html.textile.liquid
63     - Develop a web service:
64       - user/topics/arv-web.html.textile.liquid
65     - Reference:
66       - user/topics/run-command.html.textile.liquid
67       - user/reference/job-pipeline-ref.html.textile.liquid
68       - user/examples/crunch-examples.html.textile.liquid
69     - Query the metadata database:
70       - user/topics/tutorial-trait-search.html.textile.liquid
71     - Arvados License:
72       - user/copying/copying.html.textile.liquid
73       - user/copying/agpl-3.0.html
74       - user/copying/LICENSE-2.0.html
75       - user/copying/by-sa-3.0.html
76   sdk:
77     - Overview:
78       - sdk/index.html.textile.liquid
79     - Python:
80       - sdk/python/sdk-python.html.textile.liquid
81       - sdk/python/python.html.textile.liquid
82       - sdk/python/crunch-utility-libraries.html.textile.liquid
83       - sdk/python/events.html.textile.liquid
84     - Perl:
85       - sdk/perl/index.html.textile.liquid
86     - Ruby:
87       - sdk/ruby/index.html.textile.liquid
88     - Java:
89       - sdk/java/index.html.textile.liquid
90     - Go:
91       - sdk/go/index.html.textile.liquid
92     - CLI:
93       - sdk/cli/index.html.textile.liquid
94       - sdk/cli/install.html.textile.liquid
95       - sdk/cli/reference.html.textile.liquid
96       - sdk/cli/subcommands.html.textile.liquid
97   api:
98     - Concepts:
99       - api/index.html.textile.liquid
100       - api/authentication.html.textile.liquid
101       - api/methods.html.textile.liquid
102       - api/resources.html.textile.liquid
103       - api/crunch-scripts.html.textile.liquid
104       - api/permission-model.html.textile.liquid
105     - API Methods:
106       - api/methods/api_client_authorizations.html.textile.liquid
107       - api/methods/api_clients.html.textile.liquid
108       - api/methods/authorized_keys.html.textile.liquid
109       - api/methods/collections.html.textile.liquid
110       - api/methods/container_requests.html.textile.liquid
111       - api/methods/containers.html.textile.liquid
112       - api/methods/groups.html.textile.liquid
113       - api/methods/humans.html.textile.liquid
114       - api/methods/jobs.html.textile.liquid
115       - api/methods/job_tasks.html.textile.liquid
116       - api/methods/keep_disks.html.textile.liquid
117       - api/methods/keep_services.html.textile.liquid
118       - api/methods/links.html.textile.liquid
119       - api/methods/logs.html.textile.liquid
120       - api/methods/nodes.html.textile.liquid
121       - api/methods/pipeline_instances.html.textile.liquid
122       - api/methods/pipeline_templates.html.textile.liquid
123       - api/methods/repositories.html.textile.liquid
124       - api/methods/specimens.html.textile.liquid
125       - api/methods/traits.html.textile.liquid
126       - api/methods/users.html.textile.liquid
127       - api/methods/virtual_machines.html.textile.liquid
128       - api/methods/workflows.html.textile.liquid
129     - Schema:
130       - api/schema/ApiClientAuthorization.html.textile.liquid
131       - api/schema/ApiClient.html.textile.liquid
132       - api/schema/AuthorizedKey.html.textile.liquid
133       - api/schema/Collection.html.textile.liquid
134       - api/schema/Container.html.textile.liquid
135       - api/schema/ContainerRequest.html.textile.liquid
136       - api/schema/Group.html.textile.liquid
137       - api/schema/Human.html.textile.liquid
138       - api/schema/Job.html.textile.liquid
139       - api/schema/JobTask.html.textile.liquid
140       - api/schema/KeepDisk.html.textile.liquid
141       - api/schema/KeepService.html.textile.liquid
142       - api/schema/Link.html.textile.liquid
143       - api/schema/Log.html.textile.liquid
144       - api/schema/Node.html.textile.liquid
145       - api/schema/PipelineInstance.html.textile.liquid
146       - api/schema/PipelineTemplate.html.textile.liquid
147       - api/schema/Repository.html.textile.liquid
148       - api/schema/Specimen.html.textile.liquid
149       - api/schema/Trait.html.textile.liquid
150       - api/schema/User.html.textile.liquid
151       - api/schema/VirtualMachine.html.textile.liquid
152       - api/schema/Workflow.html.textile.liquid
153   installguide:
154     - Overview:
155       - install/index.html.textile.liquid
156     - Docker quick start:
157       - install/arvbox.html.textile.liquid
158     - Manual installation:
159       - install/install-manual-prerequisites.html.textile.liquid
160       - install/install-postgresql.html.textile.liquid
161       - install/install-sso.html.textile.liquid
162       - install/install-api-server.html.textile.liquid
163       - install/install-arv-git-httpd.html.textile.liquid
164       - install/install-workbench-app.html.textile.liquid
165       - install/install-shell-server.html.textile.liquid
166       - install/create-standard-objects.html.textile.liquid
167       - install/install-keepstore.html.textile.liquid
168       - install/configure-azure-blob-storage.html.textile.liquid
169       - install/install-keepproxy.html.textile.liquid
170       - install/install-keep-web.html.textile.liquid
171     - Install Crunch v2 on SLURM:
172       - install/crunch2-slurm/install-prerequisites.html.textile.liquid
173       - install/crunch2-slurm/install-compute-node.html.textile.liquid
174       - install/crunch2-slurm/install-dispatch.html.textile.liquid
175       - install/crunch2-slurm/install-test.html.textile.liquid
176     - Install Crunch v1:
177       - install/install-crunch-dispatch.html.textile.liquid
178       - install/install-compute-node.html.textile.liquid
179     - Helpful hints:
180       - install/copy_pipeline_from_curoverse.html.textile.liquid
181       - install/cheat_sheet.html.textile.liquid