2 # Copyright (C) The Arvados Authors. All rights reserved.
4 # SPDX-License-Identifier: AGPL-3.0
6 . `dirname "$(readlink -f "$0")"`/libcloud-pin.sh
9 . `dirname "$(readlink -f "$0")"`/run-library.sh
11 read -rd "\000" helpmessage <<EOF
12 $(basename $0): Install and test Arvados components.
14 Exit non-zero if any tests fail.
17 $(basename $0) WORKSPACE=/path/to/arvados [options]
21 --skip FOO Do not test the FOO component.
22 --only FOO Do not test anything except the FOO component.
23 --temp DIR Install components and dependencies under DIR instead of
24 making a new temporary directory. Implies --leave-temp.
25 --leave-temp Do not remove GOPATH, virtualenv, and other temp dirs at exit.
26 Instead, show the path to give as --temp to reuse them in
27 subsequent invocations.
28 --repeat N Repeat each install/test step until it succeeds N times.
29 --retry Prompt to retry if an install or test suite fails.
30 --skip-install Do not run any install steps. Just run tests.
31 You should provide GOPATH, GEMHOME, and VENVDIR options
32 from a previous invocation if you use this option.
33 --only-install Run specific install step
34 --short Skip (or scale down) some slow tests.
35 WORKSPACE=path Arvados source tree to test.
36 CONFIGSRC=path Dir with api server config files to copy into source tree.
37 (If none given, leave config files alone in source tree.)
38 services/api_test="TEST=test/functional/arvados/v1/collections_controller_test.rb"
39 Restrict apiserver tests to the given file
40 sdk/python_test="--test-suite test.test_keep_locator"
41 Restrict Python SDK tests to the given class
42 apps/workbench_test="TEST=test/integration/pipeline_instances_test.rb"
43 Restrict Workbench tests to the given file
44 services/arv-git-httpd_test="-check.vv"
45 Show all log messages, even when tests pass (also works
46 with services/keepstore_test etc.)
48 Print more debug messages
49 envvar=value Set \$envvar to value. Primarily useful for WORKSPACE,
50 *_test, and other examples shown above.
52 Assuming --skip-install is not given, all components are installed
53 into \$GOPATH, \$VENDIR, and \$GEMHOME before running any tests. Many
54 test suites depend on other components being installed, and installing
55 everything tends to be quicker than debugging dependencies.
57 As a special concession to the current CI server config, CONFIGSRC
58 defaults to $HOME/arvados-api-server if that directory exists.
60 More information and background:
62 https://arvados.org/projects/arvados/wiki/Running_tests
67 apps/workbench_units (*)
68 apps/workbench_functionals (*)
69 apps/workbench_integration (*)
70 apps/workbench_benchmark
71 apps/workbench_profile
80 lib/dispatchcloud/container
81 lib/dispatchcloud/scheduler
82 lib/dispatchcloud/ssh_executor
83 lib/dispatchcloud/worker
85 services/arv-git-httpd
87 services/dockercleaner
96 services/nodemanager_integration
98 services/crunch-dispatch-local
99 services/crunch-dispatch-slurm
121 tools/crunchstat-summary
124 tools/keep-block-check
126 (*) apps/workbench is shorthand for apps/workbench_units +
127 apps/workbench_functionals + apps/workbench_integration
131 # First make sure to remove any ARVADOS_ variables from the calling
132 # environment that could interfere with the tests.
133 unset $(env | cut -d= -f1 | grep \^ARVADOS_)
135 # Reset other variables that could affect our [tests'] behavior by
152 if [[ -z "$temp" ]]; then
153 # we didn't even get as far as making a temp dir
155 elif [[ -z "$temp_preserve" ]]; then
158 echo "Leaving behind temp dirs in $temp"
164 echo >&2 "Fatal: $* (encountered in ${FUNCNAME[1]} at ${BASH_SOURCE[1]} line ${BASH_LINENO[0]})"
170 create-plot-data-from-log.sh $BUILD_NUMBER "$WORKSPACE/apps/workbench/log/test.log" "$WORKSPACE/apps/workbench/log/"
171 rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
173 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
180 ( [[ -n "$WORKSPACE" ]] && [[ -d "$WORKSPACE/services" ]] ) \
181 || fatal "WORKSPACE environment variable not set to a source directory (see: $0 --help)"
182 echo Checking dependencies:
183 echo -n 'virtualenv: '
184 virtualenv --version \
185 || fatal "No virtualenv. Try: apt-get install virtualenv (on ubuntu: python-virtualenv)"
188 || fatal "No ruby. Install >=2.1.9 (using rbenv, rvm, or source)"
191 || fatal "No go binary. See http://golang.org/doc/install"
192 [[ $(go version) =~ go1.([0-9]+) ]] && [[ ${BASH_REMATCH[1]} -ge 10 ]] \
193 || fatal "Go >= 1.10 required. See http://golang.org/doc/install"
195 gcc --version | egrep ^gcc \
196 || fatal "No gcc. Try: apt-get install build-essential"
198 find /usr/include -path '*fuse/fuse.h' | egrep --max-count=1 . \
199 || fatal "No fuse/fuse.h. Try: apt-get install libfuse-dev"
201 find /usr/include -path '*gnutls/gnutls.h' | egrep --max-count=1 . \
202 || fatal "No gnutls/gnutls.h. Try: apt-get install libgnutls28-dev"
203 echo -n 'Python2 pyconfig.h: '
204 find /usr/include -path '*/python2*/pyconfig.h' | egrep --max-count=1 . \
205 || fatal "No Python2 pyconfig.h. Try: apt-get install python2.7-dev"
206 echo -n 'Python3 pyconfig.h: '
207 find /usr/include -path '*/python3*/pyconfig.h' | egrep --max-count=1 . \
208 || fatal "No Python3 pyconfig.h. Try: apt-get install python3-dev"
210 PATH="$PATH:/sbin:/usr/sbin:/usr/local/sbin" nginx -v \
211 || fatal "No nginx. Try: apt-get install nginx"
213 perl -v | grep version \
214 || fatal "No perl. Try: apt-get install perl"
215 for mod in ExtUtils::MakeMaker JSON LWP Net::SSL; do
216 echo -n "perl $mod: "
217 perl -e "use $mod; print \"\$$mod::VERSION\\n\"" \
218 || fatal "No $mod. Try: apt-get install perl-modules libcrypt-ssleay-perl libjson-perl libwww-perl"
222 || fatal "No gitolite. Try: apt-get install gitolite3"
225 || fatal "No npm. Try: wget -O- https://nodejs.org/dist/v6.11.2/node-v6.11.2-linux-x64.tar.xz | sudo tar -C /usr/local -xJf - && sudo ln -s ../node-v6.11.2-linux-x64/bin/{node,npm} /usr/local/bin/"
227 cadaver --version | grep -w cadaver \
228 || fatal "No cadaver. Try: apt-get install cadaver"
229 echo -n 'libattr1 xattr.h: '
230 find /usr/include -path '*/attr/xattr.h' | egrep --max-count=1 . \
231 || fatal "No libattr1 xattr.h. Try: apt-get install libattr1-dev"
232 echo -n 'libcurl curl.h: '
233 find /usr/include -path '*/curl/curl.h' | egrep --max-count=1 . \
234 || fatal "No libcurl curl.h. Try: apt-get install libcurl4-gnutls-dev"
235 echo -n 'libpq libpq-fe.h: '
236 find /usr/include -path '*/postgresql/libpq-fe.h' | egrep --max-count=1 . \
237 || fatal "No libpq libpq-fe.h. Try: apt-get install libpq-dev"
238 echo -n 'services/api/config/database.yml: '
239 if [[ ! -f "$WORKSPACE/services/api/config/database.yml" ]]; then
240 fatal "Please provide a database.yml file for the test suite"
244 echo -n 'postgresql: '
245 psql --version || fatal "No postgresql. Try: apt-get install postgresql postgresql-client-common"
246 echo -n 'phantomjs: '
247 phantomjs --version || fatal "No phantomjs. Try: apt-get install phantomjs"
249 which Xvfb || fatal "No xvfb. Try: apt-get install xvfb"
251 dot -V || fatal "No graphviz. Try: apt-get install graphviz"
252 echo -n 'geckodriver: '
253 geckodriver --version | grep ^geckodriver || echo "No geckodriver. Try: wget -O- https://github.com/mozilla/geckodriver/releases/download/v0.23.0/geckodriver-v0.23.0-linux64.tar.gz | sudo tar -C /usr/local/bin -xzf - geckodriver"
255 if [[ "$NEED_SDK_R" = true ]]; then
258 which Rscript || fatal "No Rscript. Try: apt-get install r-base"
260 Rscript -e "library('testthat')" || fatal "No testthat. Try: apt-get install r-cran-testthat"
261 # needed for roxygen2, needed for devtools, needed for R sdk
262 pkg-config --exists libxml-2.0 || fatal "No libxml2. Try: apt-get install libxml2-dev"
263 # needed for pkgdown, builds R SDK doc pages
264 which pandoc || fatal "No pandoc. Try: apt-get install pandoc"
269 # i.e. rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
270 # $BUILD_NUMBER is set by Jenkins if this script is being called as part of a Jenkins run
271 if [[ -f "$1/$2" ]]; then
272 THEDATE=`date +%Y%m%d%H%M%S`
273 mv "$1/$2" "$1/$THEDATE-$BUILD_NUMBER-$2"
274 gzip "$1/$THEDATE-$BUILD_NUMBER-$2"
282 skip[apps/workbench_profile]=1
283 # nodemanager_integration tests are not reliable, see #12061.
284 skip[services/nodemanager_integration]=1
291 echo >&2 "$helpmessage"
299 only[$1]=1; skip[$1]=""; shift
308 only_install="$1"; shift
318 repeat=$((${1}+0)); shift
324 suite="${arg%%_test=*}"
326 testargs["$suite"]="$args"
329 eval export $(echo $arg | cut -d= -f1)=\"$(echo $arg | cut -d= -f2-)\"
332 echo >&2 "$0: Unrecognized option: '$arg'. Try: $0 --help"
338 # R SDK installation is very slow (~360s in a clean environment) and only
339 # required when testing it. Skip that step if it is not needed.
342 if [[ ${#only[@]} -ne 0 ]] &&
343 [[ -z "${only['sdk/R']}" && -z "${only['doc']}" ]]; then
347 if [[ ${skip["sdk/R"]} == 1 && ${skip["doc"]} == 1 ]]; then
351 if [[ $NEED_SDK_R == false ]]; then
352 echo "R SDK not needed, it will not be installed."
356 echo 'Starting API, keepproxy, keep-web, ws, arv-git-httpd, and nginx ssl proxy...'
357 if [[ ! -d "$WORKSPACE/services/api/log" ]]; then
358 mkdir -p "$WORKSPACE/services/api/log"
360 # Remove empty api.pid file if it exists
361 if [[ -f "$WORKSPACE/tmp/api.pid" && ! -s "$WORKSPACE/tmp/api.pid" ]]; then
362 rm -f "$WORKSPACE/tmp/api.pid"
365 && eval $(python sdk/python/tests/run_test_server.py start --auth admin || echo fail=1) \
366 && export ARVADOS_TEST_API_HOST="$ARVADOS_API_HOST" \
367 && export ARVADOS_TEST_API_INSTALLED="$$" \
368 && python sdk/python/tests/run_test_server.py start_controller \
369 && python sdk/python/tests/run_test_server.py start_keep_proxy \
370 && python sdk/python/tests/run_test_server.py start_keep-web \
371 && python sdk/python/tests/run_test_server.py start_arv-git-httpd \
372 && python sdk/python/tests/run_test_server.py start_ws \
373 && eval $(python sdk/python/tests/run_test_server.py start_nginx || echo fail=1) \
374 && (env | egrep ^ARVADOS)
375 if [[ -n "$fail" ]]; then
381 if [[ -z "$ARVADOS_TEST_API_HOST" ]]; then
384 unset ARVADOS_TEST_API_HOST
386 && python sdk/python/tests/run_test_server.py stop_nginx \
387 && python sdk/python/tests/run_test_server.py stop_arv-git-httpd \
388 && python sdk/python/tests/run_test_server.py stop_ws \
389 && python sdk/python/tests/run_test_server.py stop_keep-web \
390 && python sdk/python/tests/run_test_server.py stop_keep_proxy \
391 && python sdk/python/tests/run_test_server.py stop_controller \
392 && python sdk/python/tests/run_test_server.py stop
396 failures+=("($(basename $0) interrupted)")
403 echo "WORKSPACE=$WORKSPACE"
405 if [[ -z "$CONFIGSRC" ]] && [[ -d "$HOME/arvados-api-server" ]]; then
406 # Jenkins expects us to use this by default.
407 CONFIGSRC="$HOME/arvados-api-server"
410 # Clean up .pyc files that may exist in the workspace
412 find -name '*.pyc' -delete
414 if [[ -z "$temp" ]]; then
418 # Set up temporary install dirs (unless existing dirs were supplied)
419 for tmpdir in VENVDIR VENV3DIR GOPATH GEMHOME PERLINSTALLBASE R_LIBS
421 if [[ -z "${!tmpdir}" ]]; then
422 eval "$tmpdir"="$temp/$tmpdir"
424 if ! [[ -d "${!tmpdir}" ]]; then
425 mkdir "${!tmpdir}" || fatal "can't create ${!tmpdir} (does $temp exist?)"
429 rm -vf "${WORKSPACE}/tmp/*.log"
431 setup_ruby_environment() {
432 if [[ -s "$HOME/.rvm/scripts/rvm" ]] ; then
433 source "$HOME/.rvm/scripts/rvm"
435 elif [[ -s "/usr/local/rvm/scripts/rvm" ]] ; then
436 source "/usr/local/rvm/scripts/rvm"
442 if [[ "$using_rvm" == true ]]; then
443 # If rvm is in use, we can't just put separate "dependencies"
444 # and "gems-under-test" paths to GEM_PATH: passenger resets
445 # the environment to the "current gemset", which would lose
446 # our GEM_PATH and prevent our test suites from running ruby
447 # programs (for example, the Workbench test suite could not
448 # boot an API server or run arv). Instead, we have to make an
449 # rvm gemset and use it for everything.
451 [[ `type rvm | head -n1` == "rvm is a function" ]] \
454 # Put rvm's favorite path back in first place (overriding
455 # virtualenv, which just put itself there). Ignore rvm's
456 # complaint about not being in first place already.
457 rvm use @default 2>/dev/null
459 # Create (if needed) and switch to an @arvados-tests-* gemset,
460 # salting the gemset name so it doesn't interfere with
461 # concurrent builds in other workspaces. Leave the choice of
462 # ruby to the caller.
463 gemset="arvados-tests-$(echo -n "${WORKSPACE}" | md5sum | head -c16)"
464 rvm use "@${gemset}" --create \
465 || fatal 'rvm gemset setup'
469 # When our "bundle install"s need to install new gems to
470 # satisfy dependencies, we want them to go where "gem install
471 # --user-install" would put them. (However, if the caller has
472 # already set GEM_HOME, we assume that's where dependencies
473 # should be installed, and we should leave it alone.)
475 if [ -z "$GEM_HOME" ]; then
476 user_gempath="$(gem env gempath)"
477 export GEM_HOME="${user_gempath%%:*}"
479 PATH="$(gem env gemdir)/bin:$PATH"
481 # When we build and install our own gems, we install them in our
482 # $GEMHOME tmpdir, and we want them to be at the front of GEM_PATH and
483 # PATH so integration tests prefer them over other versions that
484 # happen to be installed in $user_gempath, system dirs, etc.
486 tmpdir_gem_home="$(env - PATH="$PATH" HOME="$GEMHOME" gem env gempath | cut -f1 -d:)"
487 PATH="$tmpdir_gem_home/bin:$PATH"
488 export GEM_PATH="$tmpdir_gem_home"
490 echo "Will install dependencies to $(gem env gemdir)"
491 echo "Will install arvados gems to $tmpdir_gem_home"
492 echo "Gem search path is GEM_PATH=$GEM_PATH"
494 bundle config || gem install bundler \
495 || fatal 'install bundler'
499 if [[ "$using_rvm" == true ]]; then
502 GEM_HOME="$tmpdir_gem_home" GEM_PATH="$tmpdir_gem_home" "$@"
506 gem_uninstall_if_exists() {
507 if gem list "$1\$" | egrep '^\w'; then
508 gem uninstall --force --all --executables "$1"
513 local venvdest="$1"; shift
514 if ! [[ -e "$venvdest/bin/activate" ]] || ! [[ -e "$venvdest/bin/pip" ]]; then
515 virtualenv --setuptools "$@" "$venvdest" || fatal "virtualenv $venvdest failed"
516 elif [[ -n "$short" ]]; then
519 if [[ $("$venvdest/bin/python" --version 2>&1) =~ \ 3\.[012]\. ]]; then
520 # pip 8.0.0 dropped support for python 3.2, e.g., debian wheezy
521 "$venvdest/bin/pip" install --no-cache-dir 'setuptools>=18.5' 'pip>=7,<8'
523 "$venvdest/bin/pip" install --no-cache-dir 'setuptools>=18.5' 'pip>=7'
525 # ubuntu1404 can't seem to install mock via tests_require, but it can do this.
526 "$venvdest/bin/pip" install --no-cache-dir 'mock>=1.0' 'pbr<1.7.0'
529 export PERLINSTALLBASE
530 export PERLLIB="$PERLINSTALLBASE/lib/perl5:${PERLLIB:+$PERLLIB}"
537 mkdir -p "$GOPATH/src/git.curoverse.com"
538 rmdir -v --parents --ignore-fail-on-non-empty "${temp}/GOPATH"
539 if [[ ! -h "$GOPATH/src/git.curoverse.com/arvados.git" ]]; then
541 "$GOPATH/src/git.curoverse.com/arvados.git/tmp/GOPATH" \
542 "$GOPATH/src/git.curoverse.com/arvados.git/tmp" \
543 "$GOPATH/src/git.curoverse.com/arvados.git"; do
544 [[ -d "$d" ]] && rmdir "$d"
548 "$GOPATH/src/git.curoverse.com/arvados.git/arvados" \
549 "$GOPATH/src/git.curoverse.com/arvados.git"; do
550 [[ -h "$d" ]] && rm "$d"
552 ln -vsfT "$WORKSPACE" "$GOPATH/src/git.curoverse.com/arvados.git"
553 go get -v github.com/kardianos/govendor
554 cd "$GOPATH/src/git.curoverse.com/arvados.git"
555 if [[ -n "$short" ]]; then
557 "$GOPATH/bin/govendor" sync
559 # Remove cached source dirs in workdir. Otherwise, they will
560 # not qualify as +missing or +external below, and we won't be
561 # able to detect that they're missing from vendor/vendor.json.
564 "$GOPATH/bin/govendor" sync
565 [[ -z $("$GOPATH/bin/govendor" list +unused +missing +external | tee /dev/stderr) ]] \
566 || fatal "vendor/vendor.json has unused or missing dependencies -- try:
568 (export GOPATH=\"${GOPATH}\"; cd \$GOPATH/src/git.curoverse.com/arvados.git && \$GOPATH/bin/govendor add +missing +external && \$GOPATH/bin/govendor remove +unused)
572 ) || fatal "Go setup failed"
574 setup_virtualenv "$VENVDIR" --python python2.7
575 . "$VENVDIR/bin/activate"
577 # Needed for run_test_server.py which is used by certain (non-Python) tests.
578 pip install --no-cache-dir PyYAML \
579 || fatal "pip install PyYAML failed"
581 # Preinstall libcloud if using a fork; otherwise nodemanager "pip
582 # install" won't pick it up by default.
583 if [[ -n "$LIBCLOUD_PIN_SRC" ]]; then
584 pip freeze 2>/dev/null | egrep ^apache-libcloud==$LIBCLOUD_PIN \
585 || pip install --pre --ignore-installed --no-cache-dir "$LIBCLOUD_PIN_SRC" >/dev/null \
586 || fatal "pip install apache-libcloud failed"
589 # Deactivate Python 2 virtualenv
592 declare -a pythonstuff
599 services/dockercleaner:py3
602 tools/crunchstat-summary
605 # If Python 3 is available, set up its virtualenv in $VENV3DIR.
606 # Otherwise, skip dependent tests.
607 PYTHON3=$(which python3)
608 if [[ ${?} = 0 ]]; then
609 setup_virtualenv "$VENV3DIR" --python python3
614 Warning: python3 could not be found. Python 3 tests will be skipped.
619 # Reactivate Python 2 virtualenv
620 . "$VENVDIR/bin/activate"
622 # Note: this must be the last time we change PATH, otherwise rvm will
624 setup_ruby_environment
628 if ! which bundler >/dev/null
630 gem install --user-install bundler || fatal 'Could not install bundler'
633 # Jenkins config requires that glob tmp/*.log match something. Ensure
634 # that happens even if we don't end up running services that set up
636 mkdir -p "${WORKSPACE}/tmp/" || fatal "could not mkdir ${WORKSPACE}/tmp"
637 touch "${WORKSPACE}/tmp/controller.log" || fatal "could not touch ${WORKSPACE}/tmp/controller.log"
644 if [[ "$remain" -gt 1 ]]; then
645 remain=$((${remain}-1))
646 title "Repeating ${remain} more times"
650 elif [[ "$retry" == 1 ]]; then
651 read -p 'Try again? [Y/n] ' x
652 if [[ "$x" != "y" ]] && [[ "$x" != "" ]]
664 apps/workbench_units | apps/workbench_functionals | apps/workbench_integration)
667 services/nodemanager | services/nodemanager_integration)
668 suite=services/nodemanager_suite
674 if [[ -z "${skip[$suite]}" && -z "${skip[$1]}" && \
675 (${#only[@]} -eq 0 || ${only[$suite]} -eq 1 || \
676 ${only[$1]} -eq 1) ||
677 ${only[$2]} -eq 1 ]]; then
678 retry do_test_once ${@}
680 title "Skipping ${1} tests"
687 title "Running $1 tests"
689 if [[ "$2" == "go" ]]
691 covername="coverage-$(echo "$1" | sed -e 's/\//_/g')"
692 coverflags=("-covermode=count" "-coverprofile=$WORKSPACE/tmp/.$covername.tmp")
693 # We do "go get -t" here to catch compilation errors
694 # before trying "go test". Otherwise, coverage-reporting
695 # mode makes Go show the wrong line numbers when reporting
696 # compilation errors.
697 go get -ldflags "-X main.version=${ARVADOS_VERSION:-$(git log -n1 --format=%H)-dev}" -t "git.curoverse.com/arvados.git/$1" && \
698 cd "$GOPATH/src/git.curoverse.com/arvados.git/$1" && \
699 [[ -z "$(gofmt -e -d . | tee /dev/stderr)" ]] && \
700 if [[ -n "${testargs[$1]}" ]]
702 # "go test -check.vv giturl" doesn't work, but this
704 go test ${short:+-short} ${testargs[$1]}
706 # The above form gets verbose even when testargs is
707 # empty, so use this form in such cases:
708 go test ${short:+-short} ${coverflags[@]} "git.curoverse.com/arvados.git/$1"
711 if [[ -f "$WORKSPACE/tmp/.$covername.tmp" ]]
713 go tool cover -html="$WORKSPACE/tmp/.$covername.tmp" -o "$WORKSPACE/tmp/$covername.html"
714 rm "$WORKSPACE/tmp/.$covername.tmp"
716 elif [[ "$2" == "pip" ]]
719 cd "$WORKSPACE/$1" && while :
721 tries=$((${tries}+1))
722 # $3 can name a path directory for us to use, including trailing
723 # slash; e.g., the bin/ subdirectory of a virtualenv.
724 "${3}python" setup.py ${short:+--short-tests-only} test ${testargs[$1]}
726 if [[ ${tries} < 3 && ${result} == 137 ]]
728 printf '\n*****\n%s tests killed -- retrying\n*****\n\n' "$1"
734 elif [[ "$2" != "" ]]
741 checkexit $result "$1 tests"
742 title "End of $1 tests (`timer`)"
749 if [[ -z "${only_install}" || "${only_install}" == "${1}" || "${only_install}" == "${2}" ]]; then
750 retry do_install_once ${@}
755 if [[ "$skipit" = true ]]; then
756 title "Skipping $1 install"
761 title "Running $1 install"
763 if [[ "$2" == "go" ]]
765 go get -ldflags "-X main.version=${ARVADOS_VERSION:-$(git log -n1 --format=%H)-dev}" -t "git.curoverse.com/arvados.git/$1"
766 elif [[ "$2" == "pip" ]]
768 # $3 can name a path directory for us to use, including trailing
769 # slash; e.g., the bin/ subdirectory of a virtualenv.
771 # Need to change to a different directory after creating
772 # the source dist package to avoid a pip bug.
773 # see https://arvados.org/issues/5766 for details.
775 # Also need to install twice, because if it believes the package is
776 # already installed, pip it won't install it. So the first "pip
777 # install" ensures that the dependencies are met, the second "pip
778 # install" ensures that we've actually installed the local package
781 && "${3}python" setup.py sdist rotate --keep=1 --match .tar.gz \
783 && "${3}pip" install --no-cache-dir --quiet "$WORKSPACE/$1/dist"/*.tar.gz \
784 && "${3}pip" install --no-cache-dir --quiet --no-deps --ignore-installed "$WORKSPACE/$1/dist"/*.tar.gz
785 elif [[ "$2" != "" ]]
792 checkexit $result "$1 install"
793 title "End of $1 install (`timer`)"
797 bundle_install_trylocal() {
800 echo "(Running bundle install --local. 'could not find package' messages are OK.)"
801 if ! bundle install --local --no-deployment; then
802 echo "(Running bundle install again, without --local.)"
803 bundle install --no-deployment
810 cd "$WORKSPACE/doc" \
811 && bundle_install_trylocal \
819 with_test_gemset gem_uninstall_if_exists "$gemname" \
820 && cd "$WORKSPACE/$srcpath" \
821 && bundle_install_trylocal \
822 && gem build "$gemname.gemspec" \
823 && with_test_gemset gem install --no-ri --no-rdoc $(ls -t "$gemname"-*.gem|head -n1)
827 install_gem arvados sdk/ruby
829 do_install sdk/ruby ruby_sdk
832 if [[ "$NEED_SDK_R" = true ]]; then
833 cd "$WORKSPACE/sdk/R" \
834 && Rscript --vanilla install_deps.R
837 do_install sdk/R R_sdk
840 cd "$WORKSPACE/sdk/perl" \
841 && perl Makefile.PL INSTALL_BASE="$PERLINSTALLBASE" \
842 && make install INSTALLDIRS=perl
844 do_install sdk/perl perl_sdk
847 install_gem arvados-cli sdk/cli
849 do_install sdk/cli cli
851 install_login-sync() {
852 install_gem arvados-login-sync services/login-sync
854 do_install services/login-sync login-sync
856 # Install the Python SDK early. Various other test suites (like
857 # keepproxy) bring up run_test_server.py, which imports the arvados
858 # module. We can't actually *test* the Python SDK yet though, because
859 # its own test suite brings up some of those other programs (like
861 for p in "${pythonstuff[@]}"
864 if [[ ${dir} = ${p} ]]; then
865 if [[ -z ${skip[python2]} ]]; then
866 do_install ${dir} pip
868 elif [[ -n ${PYTHON3} ]]; then
869 if [[ -z ${skip[python3]} ]]; then
870 do_install ${dir} pip "$VENV3DIR/bin/"
875 install_apiserver() {
876 cd "$WORKSPACE/services/api" \
877 && RAILS_ENV=test bundle_install_trylocal
879 rm -f config/environments/test.rb
880 cp config/environments/test.rb.example config/environments/test.rb
882 if [ -n "$CONFIGSRC" ]
884 for f in database.yml
886 cp "$CONFIGSRC/$f" config/ || fatal "$f"
890 # Clear out any lingering postgresql connections to the test
891 # database, so that we can drop it. This assumes the current user
892 # is a postgresql superuser.
893 cd "$WORKSPACE/services/api" \
894 && test_database=$(python -c "import yaml; print yaml.load(file('config/database.yml'))['test']['database']") \
895 && psql "$test_database" -c "SELECT pg_terminate_backend (pg_stat_activity.pid::int) FROM pg_stat_activity WHERE pg_stat_activity.datname = '$test_database';" 2>/dev/null
897 mkdir -p "$WORKSPACE/services/api/tmp/pids"
899 cert="$WORKSPACE/services/api/tmp/self-signed"
900 if [[ ! -e "$cert.pem" || "$(date -r "$cert.pem" +%s)" -lt 1512659226 ]]; then
902 dir="$WORKSPACE/services/api/tmp"
904 openssl req -newkey rsa:2048 -nodes -subj '/C=US/ST=State/L=City/CN=localhost' -out "$cert.csr" -keyout "$cert.key" </dev/null
905 openssl x509 -req -in "$cert.csr" -signkey "$cert.key" -out "$cert.pem" -days 3650 -extfile <(printf 'subjectAltName=DNS:localhost,DNS:::1,DNS:0.0.0.0,DNS:127.0.0.1,IP:::1,IP:0.0.0.0,IP:127.0.0.1')
909 cd "$WORKSPACE/services/api" \
911 && mkdir -p tmp/git \
913 && tar xf ../../test/test.git.tar \
914 && mkdir -p internal.git \
915 && git --git-dir internal.git init \
918 cd "$WORKSPACE/services/api" \
919 && RAILS_ENV=test bundle exec rake db:drop \
920 && RAILS_ENV=test bundle exec rake db:setup \
921 && RAILS_ENV=test bundle exec rake db:fixtures:load
923 do_install services/api apiserver
934 lib/dispatchcloud/container
935 lib/dispatchcloud/scheduler
936 lib/dispatchcloud/ssh_executor
937 lib/dispatchcloud/worker
949 services/arv-git-httpd
955 services/keep-balance
957 services/crunch-dispatch-local
958 services/crunch-dispatch-slurm
961 tools/keep-block-check
966 for g in "${gostuff[@]}"
971 install_workbench() {
972 cd "$WORKSPACE/apps/workbench" \
973 && mkdir -p tmp/cache \
974 && RAILS_ENV=test bundle_install_trylocal \
975 && RAILS_ENV=test RAILS_GROUPS=assets bundle exec rake npm:install
977 do_install apps/workbench workbench
979 unset http_proxy https_proxy no_proxy
981 test_doclinkchecker() {
985 ARVADOS_API_HOST=qr1hi.arvadosapi.com
986 # Make sure python-epydoc is installed or the next line won't
988 PYTHONPATH=$WORKSPACE/sdk/python/ bundle exec rake linkchecker baseurl=file://$WORKSPACE/doc/.site/ arvados_workbench_host=https://workbench.$ARVADOS_API_HOST arvados_api_host=$ARVADOS_API_HOST
991 do_test doc doclinkchecker
996 rm -f "$WORKSPACE/services/api/git-commit.version"
997 cd "$WORKSPACE/services/api" \
998 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test TESTOPTS=-v ${testargs[services/api]}
1000 do_test services/api apiserver
1002 # Shortcut for when we're only running apiserver tests. This saves a bit of time,
1003 # because we don't need to start up the api server for subsequent tests.
1004 if [ ! -z "$only" ] && [ "$only" == "services/api" ]; then
1005 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
1009 start_services || { stop_services; fatal "start_services"; }
1012 cd "$WORKSPACE/sdk/ruby" \
1013 && bundle exec rake test TESTOPTS=-v ${testargs[sdk/ruby]}
1015 do_test sdk/ruby ruby_sdk
1018 if [[ "$NEED_SDK_R" = true ]]; then
1019 cd "$WORKSPACE/sdk/R" \
1020 && Rscript --vanilla run_test.R
1027 cd "$WORKSPACE/sdk/cli" \
1028 && mkdir -p /tmp/keep \
1029 && KEEP_LOCAL_STORE=/tmp/keep bundle exec rake test TESTOPTS=-v ${testargs[sdk/cli]}
1034 cd "$WORKSPACE/services/login-sync" \
1035 && bundle exec rake test TESTOPTS=-v ${testargs[services/login-sync]}
1037 do_test services/login-sync login-sync
1039 test_nodemanager_integration() {
1040 cd "$WORKSPACE/services/nodemanager" \
1041 && tests/integration_test.py ${testargs[services/nodemanager_integration]}
1043 do_test services/nodemanager_integration nodemanager_integration
1045 for p in "${pythonstuff[@]}"
1048 if [[ ${dir} = ${p} ]]; then
1049 if [[ -z ${skip[python2]} ]]; then
1052 elif [[ -n ${PYTHON3} ]]; then
1053 if [[ -z ${skip[python3]} ]]; then
1054 do_test ${dir} pip "$VENV3DIR/bin/"
1059 for g in "${gostuff[@]}"
1064 test_workbench_units() {
1065 cd "$WORKSPACE/apps/workbench" \
1066 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:units TESTOPTS=-v ${testargs[apps/workbench]}
1068 do_test apps/workbench_units workbench_units
1070 test_workbench_functionals() {
1071 cd "$WORKSPACE/apps/workbench" \
1072 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:functionals TESTOPTS=-v ${testargs[apps/workbench]}
1074 do_test apps/workbench_functionals workbench_functionals
1076 test_workbench_integration() {
1077 cd "$WORKSPACE/apps/workbench" \
1078 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:integration TESTOPTS=-v ${testargs[apps/workbench]}
1080 do_test apps/workbench_integration workbench_integration
1083 test_workbench_benchmark() {
1084 cd "$WORKSPACE/apps/workbench" \
1085 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:benchmark ${testargs[apps/workbench_benchmark]}
1087 do_test apps/workbench_benchmark workbench_benchmark
1089 test_workbench_profile() {
1090 cd "$WORKSPACE/apps/workbench" \
1091 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test:profile ${testargs[apps/workbench_profile]}
1093 do_test apps/workbench_profile workbench_profile