sdk/cwl/tests/federation/main.cwl

   1 #!/usr/bin/env cwl-runner
   2 # Copyright (C) The Arvados Authors. All rights reserved.
   3 #
   4 # SPDX-License-Identifier: Apache-2.0
   5
   6 cwlVersion: v1.0
   7 class: Workflow
   8 $namespaces:
   9   arv: "http://arvados.org/cwl#"
  10   cwltool: "http://commonwl.org/cwltool#"
  11 hints:
  12   cwltool:Secrets:
  13     secrets: [arvados_api_token]
  14 requirements:
  15   StepInputExpressionRequirement: {}
  16   InlineJavascriptRequirement: {}
  17   SubworkflowFeatureRequirement: {}
  18 inputs:
  19   arvados_api_token: string
  20   arvado_api_host_insecure:
  21     type: boolean
  22     default: false
  23   arvados_api_hosts: string[]
  24   arvados_cluster_ids: string[]
  25   acr: string?
  26   testcases:
  27     type: string[]
  28     default:
  29       - base-case
  30       - runner-home-step-remote
  31       - runner-remote-step-home
  32 outputs:
  33   base-case-success:
  34     type: Any
  35     outputSource: base-case/success
  36   runner-home-step-remote-success:
  37     type: Any
  38     outputSource: runner-home-step-remote/success
  39   runner-remote-step-home-success:
  40     type: Any
  41     outputSource: runner-remote-step-home/success
  42
  43 steps:
  44   base-case:
  45     in:
  46       arvados_api_token: arvados_api_token
  47       arvado_api_host_insecure: arvado_api_host_insecure
  48       arvados_api_hosts: arvados_api_hosts
  49       arvados_cluster_ids: arvados_cluster_ids
  50       acr: acr
  51       wf:
  52         default:
  53           class: File
  54           location: cases/base-case.cwl
  55           secondaryFiles:
  56             - class: File
  57               location: cases/md5sum.cwl
  58       obj:
  59         default:
  60           inp:
  61             class: File
  62             location: data/base-case-input.txt
  63         valueFrom: |-
  64           ${
  65           self["runOnCluster"] = inputs.arvados_cluster_ids[0];
  66           return self;
  67           }
  68       scrub_image: {default: "arvados/fed-test:base-case"}
  69       scrub_collections:
  70         default:
  71           - 031a4ced0aa99de90fb630568afc6e9b+67   # input collection
  72           - eb93a6718eb1a1a8ee9f66ee7d683472+51   # md5sum output collection
  73           - f654d4048612135f4a5e7707ec0fcf3e+112  # final output json
  74     out: [out, success]
  75     run: framework/testcase.cwl
  76
  77   runner-home-step-remote:
  78     in:
  79       arvados_api_token: arvados_api_token
  80       arvado_api_host_insecure: arvado_api_host_insecure
  81       arvados_api_hosts: arvados_api_hosts
  82       arvados_cluster_ids: arvados_cluster_ids
  83       acr: acr
  84       wf:
  85         default:
  86           class: File
  87           location: cases/runner-home-step-remote.cwl
  88           secondaryFiles:
  89             - class: File
  90               location: cases/md5sum.cwl
  91       obj:
  92         default:
  93           inp:
  94             class: File
  95             location: data/runner-home-step-remote-input.txt
  96         valueFrom: |-
  97           ${
  98           self["runOnCluster"] = inputs.arvados_cluster_ids[1];
  99           return self;
 100           }
 101       runner_cluster: { valueFrom: "$(inputs.arvados_cluster_ids[0])" }
 102       scrub_image: {default: "arvados/fed-test:runner-home-step-remote"}
 103       scrub_collections:
 104         default:
 105           - 3bc373e38751fe13dcbd62778d583242+81   # input collection
 106           - 428e6d91e41a3af3ae287b453949e7fd+51   # md5sum output collection
 107           - a4b0ddd866525655e8480f83a1ca83c6+112  # runner output json
 108     out: [out, success]
 109     run: framework/testcase.cwl
 110
 111   runner-remote-step-home:
 112     in:
 113       arvados_api_token: arvados_api_token
 114       arvado_api_host_insecure: arvado_api_host_insecure
 115       arvados_api_hosts: arvados_api_hosts
 116       arvados_cluster_ids: arvados_cluster_ids
 117       acr: acr
 118       wf:
 119         default:
 120           class: File
 121           location: cases/runner-remote-step-home.cwl
 122           secondaryFiles:
 123             - class: File
 124               location: cases/md5sum.cwl
 125       obj:
 126         default:
 127           inp:
 128             class: File
 129             location: data/runner-remote-step-home-input.txt
 130         valueFrom: |-
 131           ${
 132           self["runOnCluster"] = inputs.arvados_cluster_ids[0];
 133           return self;
 134           }
 135       runner_cluster: { valueFrom: "$(inputs.arvados_cluster_ids[1])" }
 136       scrub_image: {default: "arvados/fed-test:runner-remote-step-home"}
 137       scrub_collections:
 138         default:
 139           - 25fe10d8e8530329a738de69d9bc8ab5+81   # input collection
 140           - 7f052d1a04b851b6f73fba77c7802e1d+51   # md5sum output collection
 141           - ecb639201f454b6493757f5117f540df+112  # runner output json
 142     out: [out, success]
 143     run: framework/testcase.cwl