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14 <div class="col-sm-8"> <h4 class="modal-title">Getting Started with Arvados </h4> </div>
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21 <h2> Welcome!</h2> <strong>How does this work?</strong>
23 What you're looking at right now is Workbench, the graphical interface to the Arvados system.
24 <br>For example, here's what a pipeline running in Arvados looks like:<br>
25 <%= image_tag "pipeline-running.gif", :class => "style_image" %>
27 Click the <span class="btn btn-sm btn-primary">Next ></span> button below for a speed tour of Arvados.
29 <em><strong>Note:</strong> You can always come back to this Getting Started guide by clicking the <span class="fa fa-lg fa-question-circle"></span> in the upper-right corner.</em>
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35 <strong>Don't like reading manuals?</strong> Get started by running your first pipeline in 3 quick steps:<br><br>
36 <em>Tip: log-in or register with any google account if you haven't already</em>
37 <ol><li> Go to the <span class="btn btn-sm btn-default"><i class="fa fa-lg fa-fw fa-dashboard"></i> Dashboard</span> > <span class="btn btn-sm btn-primary"><i class="fa fa-fw fa-gear"></i> Run a pipeline...</span> <br><br>
38 <%= image_tag "mouse-move.gif", :class => "style_image" %><br>
40 <li> <span class="btn btn-sm btn-default"><i class="fa fa-fw fa-gear"></i>Mason Lab -- Ancestry Mapper (public)</span> > <span class="btn btn-sm btn-primary">Next: choose inputs <i class="fa fa-fw fa-arrow-circle-right"></i></span></li><br>
41 <li> <span class="btn btn-sm btn-primary">Run <i class="fa fa-fw fa-play"></i></span></li>
44 <i class="fa fa-flag fa-flip-horizontal" style="color: green"></i> <i class="fa fa-child"></i>
45 <strong>Voila!</strong> <i class="fa fa-child"></i> <i class="fa fa-flag" style="color: green"></i>
46 Your pipeline is now spooling up and getting ready to run!
48 Go ahead, try it for yourself right now. <span class="glyphicon glyphicon-thumbs-up"></span>
50 Or click <span class="btn btn-sm btn-primary">Next ></span> below to keep reading!
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54 <h2>Three Useful Terms</h2>
55 * <strong>Pipeline</strong> -- A re-usable series of analysis steps.<br><br>
56 ** Sometimes known as a “workflow” in other systems<br><br>
57 ** A list of well-documented public pipelines can be found in the upper right corner by clicking the "?" > "Public Pipelines and Datasets"<br><br>
58 ** Pro-tip: Pipeline > Jobs > Tasks. A pipeline contains jobs which contain tasks.<br><br>
59 ** Pipelines can only be shared within a project<br><br>
61 * Collection -- Like a folder, but better<br><br>
62 ** Upload data right in your browser<br><br>
63 ** Better than a folder? <br><br>
64 *** Collections contain the content-address of the data instead of the data itself<br><br>
65 *** Sets of data can be flexibly defined and re-defined without duplicating data<br><br>
66 ** Collections can be shared using the "Sharing and Permissions" > "Share" button<br><br>
68 * Projects -- Contain pipelines templates, pipeline instances (individual runs of a pipeline), and collections<br><br>
69 ** The most useful one is your default "Home" project, under Projects > Home<br><br>
70 ** Projects can be shared using the "sharing" tab<br><br>
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74 1. Reproducible Analyses: Enough said.<br><br>
75 2. Data provenance: Every file in Arvados knows can tell you where it came from.<br><br>
76 3. Serious scaling: Need 500 GB of space? 200 compute hours? Arvados scales and parallelizes your work for you intelligently.<br><br>
77 4. Share pipelines or data: Easily publish your work the world, just like the Pathomap team did: http://www.pathomap.org/2015/04/08/run-the-pathomap-human-ancestry-pipeline-on-arvados/<br><br>
78 5. Use existing pipelines: Use best-practices pipelines on your own data with the click of a button<br><br>
79 6. Open-source: Arvados is completely open-source. Check us out at http://arvados.org/<br><br>
81 This guide and even all of Workbench is just a glimpse into the power of Arvados. Want to use the command-line instead? Or hungry to learn more? Check out our detailed documentation: http://doc.arvados.org/ (our real-time contact info is there too!)
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