2 # Copyright (C) The Arvados Authors. All rights reserved.
4 # SPDX-License-Identifier: AGPL-3.0
7 . `dirname "$(readlink -f "$0")"`/run-library.sh
9 read -rd "\000" helpmessage <<EOF
10 $(basename $0): Install and test Arvados components.
12 Exit non-zero if any tests fail.
15 $(basename $0) WORKSPACE=/path/to/arvados [options]
19 --skip FOO Do not test the FOO component.
20 --skip sanity Skip initial dev environment sanity checks.
21 --skip install Do not run any install steps. Just run tests.
22 You should provide GOPATH, GEMHOME, and VENVDIR options
23 from a previous invocation if you use this option.
24 --only FOO Do not test anything except the FOO component.
25 --temp DIR Install components and dependencies under DIR instead of
26 making a new temporary directory. Implies --leave-temp.
27 --leave-temp Do not remove GOPATH, virtualenv, and other temp dirs at exit.
28 Instead, show the path to give as --temp to reuse them in
29 subsequent invocations.
30 --repeat N Repeat each install/test step until it succeeds N times.
31 --retry Prompt to retry if an install or test suite fails.
32 --only-install Run specific install step
33 --short Skip (or scale down) some slow tests.
34 --interactive Set up, then prompt for test/install steps to perform.
35 WORKSPACE=path Arvados source tree to test.
36 CONFIGSRC=path Dir with config.yml file containing PostgreSQL section for use by tests.
37 services/api_test="TEST=test/functional/arvados/v1/collections_controller_test.rb"
38 Restrict apiserver tests to the given file
39 sdk/python_test="--test-suite tests.test_keep_locator"
40 Restrict Python SDK tests to the given class
41 apps/workbench_test="TEST=test/integration/pipeline_instances_test.rb"
42 Restrict Workbench tests to the given file
43 services/githttpd_test="-check.vv"
44 Show all log messages, even when tests pass (also works
45 with services/keepstore_test etc.)
47 Print more debug messages
48 envvar=value Set \$envvar to value. Primarily useful for WORKSPACE,
49 *_test, and other examples shown above.
51 Assuming "--skip install" is not given, all components are installed
52 into \$GOPATH, \$VENDIR, and \$GEMHOME before running any tests. Many
53 test suites depend on other components being installed, and installing
54 everything tends to be quicker than debugging dependencies.
56 As a special concession to the current CI server config, CONFIGSRC
57 defaults to $HOME/arvados-api-server if that directory exists.
59 More information and background:
61 https://dev.arvados.org/projects/arvados/wiki/Running_tests
66 apps/workbench_units (*)
67 apps/workbench_functionals (*)
68 apps/workbench_integration (*)
69 apps/workbench_benchmark
70 apps/workbench_profile
78 lib/controller/federation
79 lib/controller/railsproxy
88 lib/dispatchcloud/container
89 lib/dispatchcloud/scheduler
90 lib/dispatchcloud/sshexecutor
91 lib/dispatchcloud/worker
98 services/dockercleaner
105 services/keep-balance
107 services/crunch-dispatch-local
108 services/crunch-dispatch-slurm
130 tools/crunchstat-summary
131 tools/crunchstat-summary:py3
134 tools/keep-block-check
136 (*) apps/workbench is shorthand for apps/workbench_units +
137 apps/workbench_functionals + apps/workbench_integration
141 # First make sure to remove any ARVADOS_ variables from the calling
142 # environment that could interfere with the tests.
143 unset $(env | cut -d= -f1 | grep \^ARVADOS_)
145 # Reset other variables that could affect our [tests'] behavior by
154 export LANG=en_US.UTF-8
164 if [[ -z "$temp" ]]; then
165 # we did not even get as far as making a temp dir
167 elif [[ -z "$temp_preserve" ]]; then
168 # Go creates readonly dirs in the module cache, which cause
169 # "rm -rf" to fail unless we chmod first.
173 echo "Leaving behind temp dirs in $temp"
179 echo >&2 "Fatal: $* (encountered in ${FUNCNAME[1]} at ${BASH_SOURCE[1]} line ${BASH_LINENO[0]})"
185 if which create-plot-data-from-log.sh >/dev/null; then
186 create-plot-data-from-log.sh $BUILD_NUMBER "$WORKSPACE/apps/workbench/log/test.log" "$WORKSPACE/apps/workbench/log/"
188 rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
190 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
197 [[ -n "${skip[sanity]}" ]] && return 0
198 ( [[ -n "$WORKSPACE" ]] && [[ -d "$WORKSPACE/services" ]] ) \
199 || fatal "WORKSPACE environment variable not set to a source directory (see: $0 --help)"
200 [[ -z "$CONFIGSRC" ]] || [[ -s "$CONFIGSRC/config.yml" ]] \
201 || fatal "CONFIGSRC is $CONFIGSRC but '$CONFIGSRC/config.yml' is empty or not found (see: $0 --help)"
202 echo Checking dependencies:
203 echo "locale: ${LANG}"
204 [[ "$(locale charmap)" = "UTF-8" ]] \
205 || fatal "Locale '${LANG}' is broken/missing. Try: echo ${LANG} | sudo tee -a /etc/locale.gen && sudo locale-gen"
208 || fatal "No ruby. Install >=2.1.9 (using rbenv, rvm, or source)"
211 || fatal "No go binary. See http://golang.org/doc/install"
212 [[ $(go version) =~ go1.([0-9]+) ]] && [[ ${BASH_REMATCH[1]} -ge 12 ]] \
213 || fatal "Go >= 1.12 required. See http://golang.org/doc/install"
215 gcc --version | egrep ^gcc \
216 || fatal "No gcc. Try: apt-get install build-essential"
218 find /usr/include -path '*fuse/fuse.h' | egrep --max-count=1 . \
219 || fatal "No fuse/fuse.h. Try: apt-get install libfuse-dev"
221 find /usr/include -path '*gnutls/gnutls.h' | egrep --max-count=1 . \
222 || fatal "No gnutls/gnutls.h. Try: apt-get install libgnutls28-dev"
223 echo -n 'virtualenv: '
224 python3 -m venv -h | egrep --max-count=1 . \
225 || fatal "No virtualenv. Try: apt-get install python3-venv"
226 echo -n 'Python3 pyconfig.h: '
227 find /usr/include -path '*/python3*/pyconfig.h' | egrep --max-count=1 . \
228 || fatal "No Python3 pyconfig.h. Try: apt-get install python3-dev"
230 || fatal "No netstat. Try: apt-get install net-tools"
232 PATH="$PATH:/sbin:/usr/sbin:/usr/local/sbin" nginx -v \
233 || fatal "No nginx. Try: apt-get install nginx"
236 || fatal "No gitolite. Try: apt-get install gitolite3"
239 || fatal "No npm. Try: wget -O- https://nodejs.org/dist/v10.23.1/node-v10.23.1-linux-x64.tar.xz | sudo tar -C /usr/local -xJf - && sudo ln -s ../node-v10.23.1-linux-x64/bin/{node,npm} /usr/local/bin/"
241 cadaver --version | grep -w cadaver \
242 || fatal "No cadaver. Try: apt-get install cadaver"
243 echo -n 'libattr1 xattr.h: '
244 find /usr/include -path '*/attr/xattr.h' | egrep --max-count=1 . \
245 || fatal "No libattr1 xattr.h. Try: apt-get install libattr1-dev"
246 echo -n 'libcurl curl.h: '
247 find /usr/include -path '*/curl/curl.h' | egrep --max-count=1 . \
248 || fatal "No libcurl curl.h. Try: apt-get install libcurl4-gnutls-dev"
249 echo -n 'libpq libpq-fe.h: '
250 find /usr/include -path '*/postgresql/libpq-fe.h' | egrep --max-count=1 . \
251 || fatal "No libpq libpq-fe.h. Try: apt-get install libpq-dev"
252 echo -n 'libpam pam_appl.h: '
253 find /usr/include -path '*/security/pam_appl.h' | egrep --max-count=1 . \
254 || fatal "No libpam pam_appl.h. Try: apt-get install libpam0g-dev"
255 echo -n 'postgresql: '
256 psql --version || fatal "No postgresql. Try: apt-get install postgresql postgresql-client-common"
257 echo -n 'phantomjs: '
258 phantomjs --version || fatal "No phantomjs. Try: apt-get install phantomjs"
260 which Xvfb || fatal "No xvfb. Try: apt-get install xvfb"
262 dot -V || fatal "No graphviz. Try: apt-get install graphviz"
263 echo -n 'geckodriver: '
264 geckodriver --version | grep ^geckodriver || echo "No geckodriver. Try: arvados-server install"
265 echo -n 'singularity: '
266 singularity --version || fatal "No singularity. Try: arvados-server install"
267 echo -n 'docker client: '
268 docker --version || echo "No docker client. Try: arvados-server install"
269 echo -n 'docker server: '
270 docker info --format='{{.ServerVersion}}' || echo "No docker server. Try: arvados-server install"
272 if [[ "$NEED_SDK_R" = true ]]; then
275 which Rscript || fatal "No Rscript. Try: apt-get install r-base"
277 Rscript -e "library('testthat')" || fatal "No testthat. Try: apt-get install r-cran-testthat"
278 # needed for roxygen2, needed for devtools, needed for R sdk
279 pkg-config --exists libxml-2.0 || fatal "No libxml2. Try: apt-get install libxml2-dev"
280 # needed for pkgdown, builds R SDK doc pages
281 which pandoc || fatal "No pandoc. Try: apt-get install pandoc"
283 echo 'procs with /dev/fuse open:'
284 find /proc/*/fd -lname /dev/fuse 2>/dev/null | cut -d/ -f3 | xargs --no-run-if-empty ps -lywww
285 echo 'grep fuse /proc/self/mountinfo:'
286 grep fuse /proc/self/mountinfo
290 # i.e. rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
291 # $BUILD_NUMBER is set by Jenkins if this script is being called as part of a Jenkins run
292 if [[ -f "$1/$2" ]]; then
293 THEDATE=`date +%Y%m%d%H%M%S`
294 mv "$1/$2" "$1/$THEDATE-$BUILD_NUMBER-$2"
295 gzip "$1/$THEDATE-$BUILD_NUMBER-$2"
303 skip[apps/workbench_profile]=1
310 echo >&2 "$helpmessage"
318 only[$1]=1; skip[$1]=""; shift
330 only_install="$1"; shift
340 repeat=$((${1}+0)); shift
346 suite="${arg%%_test=*}"
348 testargs["$suite"]="$args"
351 eval export $(echo $arg | cut -d= -f1)=\"$(echo $arg | cut -d= -f2-)\"
354 echo >&2 "$0: Unrecognized option: '$arg'. Try: $0 --help"
360 # R SDK installation is very slow (~360s in a clean environment) and only
361 # required when testing it. Skip that step if it is not needed.
364 if [[ ${#only[@]} -ne 0 ]] &&
365 [[ -z "${only['sdk/R']}" && -z "${only['doc']}" ]]; then
369 if [[ ${skip["sdk/R"]} == 1 && ${skip["doc"]} == 1 ]]; then
373 if [[ $NEED_SDK_R == false ]]; then
374 echo "R SDK not needed, it will not be installed."
379 pid="$(cat "$WORKSPACE/tmp/${svc}.pid")"
380 if [[ -z "$pid" ]] || ! kill -0 "$pid"; then
381 tail $WORKSPACE/tmp/${1}*.log
382 echo "${svc} pid ${pid} not running"
385 echo "${svc} pid ${pid} ok"
390 base=$("${VENV3DIR}/bin/python3" -c "import yaml; print(list(yaml.safe_load(open('$ARVADOS_CONFIG','r'))['Clusters']['zzzzz']['Services']['$1']['InternalURLs'].keys())[0])")
391 url="$base/_health/ping"
392 if ! curl -Ss -H "Authorization: Bearer e687950a23c3a9bceec28c6223a06c79" "${url}" | tee -a /dev/stderr | grep '"OK"'; then
398 checkdiscoverydoc() {
399 dd="https://${1}/discovery/v1/apis/arvados/v1/rest"
400 if ! (set -o pipefail; curl -fsk "$dd" | grep -q ^{ ); then
401 echo >&2 "ERROR: could not retrieve discovery doc from RailsAPI at $dd"
402 tail -v $WORKSPACE/tmp/railsapi.log
409 if [[ -n "$ARVADOS_TEST_API_HOST" ]]; then
412 . "$VENV3DIR/bin/activate"
413 echo 'Starting API, controller, keepproxy, keep-web, githttpd, ws, and nginx ssl proxy...'
414 if [[ ! -d "$WORKSPACE/services/api/log" ]]; then
415 mkdir -p "$WORKSPACE/services/api/log"
417 # Remove empty api.pid file if it exists
418 if [[ -f "$WORKSPACE/tmp/api.pid" && ! -s "$WORKSPACE/tmp/api.pid" ]]; then
419 rm -f "$WORKSPACE/tmp/api.pid"
421 all_services_stopped=
425 && eval $(python3 sdk/python/tests/run_test_server.py start --auth admin) \
426 && export ARVADOS_TEST_API_HOST="$ARVADOS_API_HOST" \
427 && export ARVADOS_TEST_API_INSTALLED="$$" \
428 && checkpidfile api \
429 && checkdiscoverydoc $ARVADOS_API_HOST \
430 && eval $(python3 sdk/python/tests/run_test_server.py start_nginx) \
431 && checkpidfile nginx \
432 && python3 sdk/python/tests/run_test_server.py start_controller \
433 && checkpidfile controller \
434 && checkhealth Controller \
435 && checkdiscoverydoc $ARVADOS_API_HOST \
436 && python3 sdk/python/tests/run_test_server.py start_keep_proxy \
437 && checkpidfile keepproxy \
438 && python3 sdk/python/tests/run_test_server.py start_keep-web \
439 && checkpidfile keep-web \
440 && checkhealth WebDAV \
441 && python3 sdk/python/tests/run_test_server.py start_githttpd \
442 && checkpidfile githttpd \
443 && checkhealth GitHTTP \
444 && python3 sdk/python/tests/run_test_server.py start_ws \
446 && export ARVADOS_TEST_PROXY_SERVICES=1 \
447 && (env | egrep ^ARVADOS) \
450 if [[ $fail != 0 ]]; then
451 unset ARVADOS_TEST_API_HOST
457 if [[ -n "$all_services_stopped" ]]; then
460 unset ARVADOS_TEST_API_HOST ARVADOS_TEST_PROXY_SERVICES
461 . "$VENV3DIR/bin/activate" || return
463 && python3 sdk/python/tests/run_test_server.py stop_nginx \
464 && python3 sdk/python/tests/run_test_server.py stop_githttpd \
465 && python3 sdk/python/tests/run_test_server.py stop_ws \
466 && python3 sdk/python/tests/run_test_server.py stop_keep-web \
467 && python3 sdk/python/tests/run_test_server.py stop_keep_proxy \
468 && python3 sdk/python/tests/run_test_server.py stop_controller \
469 && python3 sdk/python/tests/run_test_server.py stop \
470 && all_services_stopped=1
476 if [[ -n "$ignore_sigint" ]]; then
477 echo >&2 "ignored SIGINT"
480 failures+=("($(basename $0) interrupted)")
485 setup_ruby_environment() {
486 if [[ -s "$HOME/.rvm/scripts/rvm" ]] ; then
487 source "$HOME/.rvm/scripts/rvm"
489 elif [[ -s "/usr/local/rvm/scripts/rvm" ]] ; then
490 source "/usr/local/rvm/scripts/rvm"
496 if [[ "$using_rvm" == true ]]; then
497 # If rvm is in use, we can't just put separate "dependencies"
498 # and "gems-under-test" paths to GEM_PATH: passenger resets
499 # the environment to the "current gemset", which would lose
500 # our GEM_PATH and prevent our test suites from running ruby
501 # programs (for example, the Workbench test suite could not
502 # boot an API server or run arv). Instead, we have to make an
503 # rvm gemset and use it for everything.
505 [[ `type rvm | head -n1` == "rvm is a function" ]] \
508 # Put rvm's favorite path back in first place (overriding
509 # virtualenv, which just put itself there). Ignore rvm's
510 # complaint about not being in first place already.
511 rvm use @default 2>/dev/null
513 # Create (if needed) and switch to an @arvados-tests-* gemset,
514 # salting the gemset name so it doesn't interfere with
515 # concurrent builds in other workspaces. Leave the choice of
516 # ruby to the caller.
517 gemset="arvados-tests-$(echo -n "${WORKSPACE}" | md5sum | head -c16)"
518 rvm use "@${gemset}" --create \
519 || fatal 'rvm gemset setup'
522 (bundle version | grep -q 2.2.19) || gem install --no-document bundler -v 2.2.19
523 bundle="$(which bundle)"
525 "$bundle" version | grep 2.2.19 || fatal 'install bundler'
527 # When our "bundle install"s need to install new gems to
528 # satisfy dependencies, we want them to go where "gem install
529 # --user-install" would put them. (However, if the caller has
530 # already set GEM_HOME, we assume that's where dependencies
531 # should be installed, and we should leave it alone.)
533 if [ -z "$GEM_HOME" ]; then
534 user_gempath="$(gem env gempath)"
535 export GEM_HOME="${user_gempath%%:*}"
537 PATH="$(gem env gemdir)/bin:$PATH"
539 # When we build and install our own gems, we install them in our
540 # $GEMHOME tmpdir, and we want them to be at the front of GEM_PATH and
541 # PATH so integration tests prefer them over other versions that
542 # happen to be installed in $user_gempath, system dirs, etc.
544 tmpdir_gem_home="$(env - PATH="$PATH" HOME="$GEMHOME" gem env gempath | cut -f1 -d:)"
545 PATH="$tmpdir_gem_home/bin:$PATH"
546 export GEM_PATH="$tmpdir_gem_home:$(gem env gempath)"
548 echo "Will install dependencies to $(gem env gemdir)"
549 echo "Will install bundler and arvados gems to $tmpdir_gem_home"
550 echo "Gem search path is GEM_PATH=$GEM_PATH"
555 for v in ${versions[@]}; do
556 if ! gem list --installed --version "${v}" bundler >/dev/null; then
557 gem install --no-document --user $(for v in ${versions[@]}; do echo bundler:${v}; done)
561 "$bundle" version | tee /dev/stderr | grep -q 'version 2'
562 ) || fatal 'install bundler'
563 if test -d /var/lib/arvados-arvbox/ ; then
564 # Inside arvbox, use bundler-installed binstubs. The
565 # system bundler and rail's own bin/bundle refuse to work.
567 bundle=binstubs/bundle
573 if [[ "$using_rvm" == true ]]; then
576 GEM_HOME="$tmpdir_gem_home" GEM_PATH="$tmpdir_gem_home" "$@"
580 gem_uninstall_if_exists() {
581 if gem list "$1\$" | egrep '^\w'; then
582 gem uninstall --force --all --executables "$1"
587 local venvdest="$1"; shift
588 if ! [[ -e "$venvdest/bin/activate" ]] || ! [[ -e "$venvdest/bin/pip3" ]]; then
589 python3 -m venv "$@" "$venvdest" || fatal "virtualenv $venvdest failed"
590 elif [[ -n "$short" ]]; then
593 "$venvdest/bin/pip3" install --no-cache-dir 'setuptools>=18.5' 'pip>=7'
597 # If dependencies like ruby, go, etc. are installed in
598 # /var/lib/arvados -- presumably by "arvados-server install" --
599 # then we want to use those versions, instead of whatever happens
600 # to be installed in /usr.
601 PATH="/var/lib/arvados/bin:${PATH}"
604 echo "WORKSPACE=$WORKSPACE"
606 # Clean up .pyc files that may exist in the workspace
608 find -name '*.pyc' -delete
610 if [[ -z "$temp" ]]; then
614 # Set up temporary install dirs (unless existing dirs were supplied)
615 for tmpdir in VENV3DIR GOPATH GEMHOME R_LIBS
617 if [[ -z "${!tmpdir}" ]]; then
618 eval "$tmpdir"="$temp/$tmpdir"
620 if ! [[ -d "${!tmpdir}" ]]; then
621 mkdir "${!tmpdir}" || fatal "can't create ${!tmpdir} (does $temp exist?)"
625 rm -vf "${WORKSPACE}/tmp/*.log"
630 # Make sure our compiled binaries under test override anything
631 # else that might be in the environment.
632 export PATH=$GOPATH/bin:$PATH
634 # Jenkins config requires that glob tmp/*.log match something. Ensure
635 # that happens even if we don't end up running services that set up
637 mkdir -p "${WORKSPACE}/tmp/" || fatal "could not mkdir ${WORKSPACE}/tmp"
638 touch "${WORKSPACE}/tmp/controller.log" || fatal "could not touch ${WORKSPACE}/tmp/controller.log"
640 unset http_proxy https_proxy no_proxy
642 # Note: this must be the last time we change PATH, otherwise rvm will
644 setup_ruby_environment
650 go mod download || fatal "Go deps failed"
651 which goimports >/dev/null || go install golang.org/x/tools/cmd/goimports@latest || fatal "Go setup failed"
653 setup_virtualenv "$VENV3DIR"
654 . "$VENV3DIR/bin/activate"
656 # Needed for run_test_server.py which is used by certain (non-Python) tests.
657 # pdoc3 needed to generate the Python SDK documentation.
660 "${VENV3DIR}/bin/pip3" install wheel
661 "${VENV3DIR}/bin/pip3" install PyYAML
662 "${VENV3DIR}/bin/pip3" install httplib2
663 "${VENV3DIR}/bin/pip3" install future
664 "${VENV3DIR}/bin/pip3" install google-api-python-client
665 "${VENV3DIR}/bin/pip3" install ciso8601
666 "${VENV3DIR}/bin/pip3" install pycurl
667 "${VENV3DIR}/bin/pip3" install ws4py
668 "${VENV3DIR}/bin/pip3" install pdoc3
669 cd "$WORKSPACE/sdk/python"
670 python3 setup.py install
671 ) || fatal "installing PyYAML and sdk/python failed"
679 if [[ "$remain" -gt 1 ]]; then
680 remain=$((${remain}-1))
681 title "(repeating ${remain} more times)"
685 elif [[ "$retry" == 1 ]]; then
686 read -p 'Try again? [Y/n] ' x
687 if [[ "$x" != "y" ]] && [[ "$x" != "" ]]
699 apps/workbench_units | apps/workbench_functionals | apps/workbench_integration)
706 if [[ -n "${skip[$suite]}" || \
707 -n "${skip[$1]}" || \
708 (${#only[@]} -ne 0 && ${only[$suite]} -eq 0 && ${only[$1]} -eq 0) ]]; then
714 check_arvados_config "$1"
716 gofmt | doc | lib/cli | lib/cloud/azure | lib/cloud/ec2 | lib/cloud/cloudtest | lib/cmd | lib/dispatchcloud/sshexecutor | lib/dispatchcloud/worker)
717 check_arvados_config "$1"
718 # don't care whether services are running
721 check_arvados_config "$1"
722 if ! start_services; then
723 checkexit 1 "$1 tests"
724 title "test $1 -- failed to start services"
729 retry do_test_once ${@}
733 version=${ARVADOS_VERSION:-$(git log -n1 --format=%H)-dev}
734 echo "-X git.arvados.org/arvados.git/lib/cmd.version=${version} -X main.version=${version} -s -w"
744 if which deactivate >/dev/null; then deactivate; fi
745 if ! . "$VENV3DIR/bin/activate"
748 elif [[ "$2" == "go" ]]
750 covername="coverage-$(echo "$1" | sed -e 's/\//_/g')"
751 coverflags=("-covermode=count" "-coverprofile=$WORKSPACE/tmp/.$covername.tmp")
753 if [[ "$1" == "cmd/arvados-package" ]]; then
754 testflags+=("-timeout" "20m")
756 # We do "go install" here to catch compilation errors
757 # before trying "go test". Otherwise, coverage-reporting
758 # mode makes Go show the wrong line numbers when reporting
759 # compilation errors.
760 go install -ldflags "$(go_ldflags)" "$WORKSPACE/$1" && \
761 cd "$WORKSPACE/$1" && \
762 if [[ -n "${testargs[$1]}" ]]
764 # "go test -check.vv giturl" doesn't work, but this
766 go test ${short:+-short} ${testflags[@]} ${testargs[$1]}
768 # The above form gets verbose even when testargs is
769 # empty, so use this form in such cases:
770 go test ${short:+-short} ${testflags[@]} ${coverflags[@]} "git.arvados.org/arvados.git/$1"
773 if [[ -f "$WORKSPACE/tmp/.$covername.tmp" ]]
775 go tool cover -html="$WORKSPACE/tmp/.$covername.tmp" -o "$WORKSPACE/tmp/$covername.html"
776 rm "$WORKSPACE/tmp/.$covername.tmp"
778 [[ $result = 0 ]] && gofmt -e -d *.go
779 elif [[ "$2" == "pip" ]]
782 cd "$WORKSPACE/$1" && while :
784 tries=$((${tries}+1))
785 # $3 can name a path directory for us to use, including trailing
786 # slash; e.g., the bin/ subdirectory of a virtualenv.
787 if [[ -e "${3}activate" ]]; then
790 python setup.py ${short:+--short-tests-only} test ${testargs[$1]}
792 if [[ ${tries} < 3 && ${result} == 137 ]]
794 printf '\n*****\n%s tests killed -- retrying\n*****\n\n' "$1"
800 elif [[ "$2" != "" ]]
807 checkexit $result "$1 tests"
808 title "test $1 -- `timer`"
812 check_arvados_config() {
813 if [[ "$1" = "env" ]] ; then
816 if [[ -z "$ARVADOS_CONFIG" ]] ; then
817 # Create config file. The run_test_server script requires PyYAML,
818 # so virtualenv needs to be active. Downstream steps like
819 # workbench install which require a valid config.yml.
820 if [[ ! -s "$VENV3DIR/bin/activate" ]] ; then
823 . "$VENV3DIR/bin/activate"
825 eval $(python3 sdk/python/tests/run_test_server.py setup_config)
831 if [[ -n "${skip[install]}" || ( -n "${only_install}" && "${only_install}" != "${1}" && "${only_install}" != "${2}" ) ]]; then
834 check_arvados_config "$1"
835 retry do_install_once ${@}
843 if which deactivate >/dev/null; then deactivate; fi
844 if [[ "$1" != "env" ]] && ! . "$VENV3DIR/bin/activate"; then
846 elif [[ "$2" == "go" ]]
848 go install -ldflags "$(go_ldflags)" "$WORKSPACE/$1"
849 elif [[ "$2" == "pip" ]]
851 # $3 can name a path directory for us to use, including trailing
852 # slash; e.g., the bin/ subdirectory of a virtualenv.
854 # Need to change to a different directory after creating
855 # the source dist package to avoid a pip bug.
856 # see https://arvados.org/issues/5766 for details.
858 # Also need to install twice, because if it believes the package is
859 # already installed, pip it won't install it. So the first "pip
860 # install" ensures that the dependencies are met, the second "pip
861 # install" ensures that we've actually installed the local package
864 && "${3}python3" setup.py sdist rotate --keep=1 --match .tar.gz \
866 && "${3}pip3" install --no-cache-dir "$WORKSPACE/$1/dist"/*.tar.gz \
867 && "${3}pip3" install --no-cache-dir --no-deps --ignore-installed "$WORKSPACE/$1/dist"/*.tar.gz
868 elif [[ "$2" != "" ]]
875 checkexit $result "$1 install"
876 title "install $1 -- `timer`"
880 bundle_install_trylocal() {
883 echo "(Running bundle install --local. 'could not find package' messages are OK.)"
884 if ! "$bundle" install --local --no-deployment; then
885 echo "(Running bundle install again, without --local.)"
886 "$bundle" install --no-deployment
893 cd "$WORKSPACE/doc" \
894 && bundle_install_trylocal \
901 with_test_gemset gem_uninstall_if_exists "$gemname" \
902 && cd "$WORKSPACE/$srcpath" \
903 && bundle_install_trylocal \
904 && gem build "$gemname.gemspec" \
905 && with_test_gemset gem install --no-document $(ls -t "$gemname"-*.gem|head -n1)
909 install_gem arvados sdk/ruby
913 if [[ "$NEED_SDK_R" = true ]]; then
914 cd "$WORKSPACE/sdk/R" \
915 && Rscript --vanilla install_deps.R
920 install_gem arvados-cli sdk/cli
923 install_services/login-sync() {
924 install_gem arvados sdk/ruby
925 install_gem arvados-login-sync services/login-sync
928 install_services/api() {
930 check_arvados_config "services/api"
931 cd "$WORKSPACE/services/api" \
932 && RAILS_ENV=test bundle_install_trylocal \
935 rm -f config/environments/test.rb
936 cp config/environments/test.rb.example config/environments/test.rb
938 # Clear out any lingering postgresql connections to the test
939 # database, so that we can drop it. This assumes the current user
940 # is a postgresql superuser.
941 cd "$WORKSPACE/services/api" \
942 && test_database=$("${VENV3DIR}/bin/python3" -c "import yaml; print(yaml.safe_load(open('$ARVADOS_CONFIG','r'))['Clusters']['zzzzz']['PostgreSQL']['Connection']['dbname'])") \
943 && psql "$test_database" -c "SELECT pg_terminate_backend (pg_stat_activity.pid::int) FROM pg_stat_activity WHERE pg_stat_activity.datname = '$test_database';" 2>/dev/null
945 mkdir -p "$WORKSPACE/services/api/tmp/pids"
947 cert="$WORKSPACE/services/api/tmp/self-signed"
948 if [[ ! -e "$cert.pem" || "$(date -r "$cert.pem" +%s)" -lt 1512659226 ]]; then
950 dir="$WORKSPACE/services/api/tmp"
952 openssl req -newkey rsa:2048 -nodes -subj '/C=US/ST=State/L=City/CN=localhost' -out "$cert.csr" -keyout "$cert.key" </dev/null
953 openssl x509 -req -in "$cert.csr" -signkey "$cert.key" -out "$cert.pem" -days 3650 -extfile <(printf 'subjectAltName=DNS:localhost,DNS:::1,DNS:0.0.0.0,DNS:127.0.0.1,IP:::1,IP:0.0.0.0,IP:127.0.0.1')
957 cd "$WORKSPACE/services/api" \
959 && mkdir -p tmp/git \
961 && tar xf ../../test/test.git.tar \
962 && mkdir -p internal.git \
963 && git --git-dir internal.git init \
968 cd "$WORKSPACE/services/api"
969 export RAILS_ENV=test
970 if bin/rails db:environment:set ; then
974 bin/rake db:fixtures:load
978 declare -a pythonstuff
982 services/dockercleaner:py3
984 tools/crunchstat-summary:py3
988 gostuff=($(cd "$WORKSPACE" && git ls-files | grep '\.go$' | sed -e 's/\/[^\/]*$//' | sort -u))
990 install_apps/workbench() {
991 cd "$WORKSPACE/apps/workbench" \
992 && mkdir -p tmp/cache \
993 && RAILS_ENV=test bundle_install_trylocal \
994 && RAILS_ENV=test RAILS_GROUPS=assets "$bundle" exec rake npm:install
1001 ARVADOS_API_HOST=pirca.arvadosapi.com
1002 # Make sure python-epydoc is installed or the next line won't
1004 PYTHONPATH=$WORKSPACE/sdk/python/ "$bundle" exec rake linkchecker baseurl=file://$WORKSPACE/doc/.site/ arvados_workbench_host=https://workbench.$ARVADOS_API_HOST arvados_api_host=$ARVADOS_API_HOST
1009 cd "$WORKSPACE" || return 1
1010 dirs=$(ls -d */ | egrep -v 'vendor|tmp')
1011 [[ -z "$(gofmt -e -d $dirs | tee -a /dev/stderr)" ]]
1014 test_services/api() {
1015 rm -f "$WORKSPACE/services/api/git-commit.version"
1016 cd "$WORKSPACE/services/api" \
1017 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake test TESTOPTS=\'-v -d\' ${testargs[services/api]}
1021 cd "$WORKSPACE/sdk/ruby" \
1022 && "$bundle" exec rake test TESTOPTS=-v ${testargs[sdk/ruby]}
1026 if [[ "$NEED_SDK_R" = true ]]; then
1027 cd "$WORKSPACE/sdk/R" \
1028 && Rscript --vanilla run_test.R
1033 cd "$WORKSPACE/sdk/cli" \
1034 && mkdir -p /tmp/keep \
1035 && KEEP_LOCAL_STORE=/tmp/keep "$bundle" exec rake test TESTOPTS=-v ${testargs[sdk/cli]}
1038 test_sdk/java-v2() {
1039 cd "$WORKSPACE/sdk/java-v2" && gradle test ${testargs[sdk/java-v2]}
1042 test_services/login-sync() {
1043 cd "$WORKSPACE/services/login-sync" \
1044 && "$bundle" exec rake test TESTOPTS=-v ${testargs[services/login-sync]}
1047 test_apps/workbench_units() {
1048 local TASK="test:units"
1049 cd "$WORKSPACE/apps/workbench" \
1050 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_units]}
1053 test_apps/workbench_functionals() {
1054 local TASK="test:functionals"
1055 cd "$WORKSPACE/apps/workbench" \
1056 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_functionals]}
1059 test_apps/workbench_integration() {
1060 local TASK="test:integration"
1061 cd "$WORKSPACE/apps/workbench" \
1062 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_integration]}
1065 test_apps/workbench_benchmark() {
1066 local TASK="test:benchmark"
1067 cd "$WORKSPACE/apps/workbench" \
1068 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} ${testargs[apps/workbench_benchmark]}
1071 test_apps/workbench_profile() {
1072 local TASK="test:profile"
1073 cd "$WORKSPACE/apps/workbench" \
1074 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} ${testargs[apps/workbench_profile]}
1078 # Install parts needed by test suites
1080 do_install cmd/arvados-server go
1082 do_install sdk/python pip "${VENV3DIR}/bin/"
1084 do_install services/api
1085 do_install services/keepproxy go
1086 do_install services/keep-web go
1095 do_install services/login-sync
1096 for p in "${pythonstuff[@]}"
1099 if [[ -z ${skip[python3]} ]]; then
1100 do_install ${dir} pip "$VENV3DIR/bin/"
1103 for g in "${gostuff[@]}"
1107 do_install services/api
1108 do_install apps/workbench
1113 do_test services/api
1115 # Shortcut for when we're only running apiserver tests. This saves a bit of time,
1116 # because we don't need to start up the api server for subsequent tests.
1117 if [ ! -z "$only" ] && [ "$only" == "services/api" ]; then
1118 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
1127 do_test services/login-sync
1129 for p in "${pythonstuff[@]}"
1132 if [[ -z ${skip[python3]} ]]; then
1133 do_test ${dir} pip "$VENV3DIR/bin/"
1137 for g in "${gostuff[@]}"
1141 do_test apps/workbench_units
1142 do_test apps/workbench_functionals
1143 do_test apps/workbench_integration
1144 do_test apps/workbench_benchmark
1145 do_test apps/workbench_profile
1150 for g in "${gostuff[@]}"
1156 help_interactive() {
1157 echo "== Interactive commands:"
1158 echo "TARGET (short for 'test DIR')"
1160 echo "10 test TARGET (run test 10 times)"
1161 echo "test TARGET:py3 (test with python3)"
1162 echo "test TARGET -check.vv (pass arguments to test)"
1163 echo "install TARGET"
1164 echo "install env (go/python libs)"
1165 echo "install deps (go/python libs + arvados components needed for integration tests)"
1166 echo "reset (...services used by integration tests)"
1168 echo "== Test targets:"
1169 echo "${!testfuncargs[@]}" | tr ' ' '\n' | sort | column
1174 declare -A testfuncargs=()
1175 for g in "${gostuff[@]}"; do
1176 testfuncargs[$g]="$g go"
1178 for p in "${pythonstuff[@]}"; do
1180 testfuncargs[$dir:py3]="$dir pip $VENV3DIR/bin/"
1183 testfuncargs["sdk/cli"]="sdk/cli"
1184 testfuncargs["sdk/R"]="sdk/R"
1185 testfuncargs["sdk/java-v2"]="sdk/java-v2"
1186 testfuncargs["apps/workbench_units"]="apps/workbench_units"
1187 testfuncargs["apps/workbench_functionals"]="apps/workbench_functionals"
1188 testfuncargs["apps/workbench_integration"]="apps/workbench_integration"
1189 testfuncargs["apps/workbench_benchmark"]="apps/workbench_benchmark"
1190 testfuncargs["apps/workbench_profile"]="apps/workbench_profile"
1192 if [[ -z ${interactive} ]]; then
1199 if [[ -e "$VENV3DIR/bin/activate" ]]; then stop_services; fi
1201 if [[ "$TERM" = dumb ]]; then
1202 # assume emacs, or something, is offering a history buffer
1203 # and pre-populating the command will only cause trouble
1205 elif [[ ! -e "$VENV3DIR/bin/activate" ]]; then
1206 nextcmd="install deps"
1213 nextcmd="install deps"
1215 HISTFILE="$WORKSPACE/tmp/.history"
1218 while read -p 'What next? ' -e -i "$nextcmd" nextcmd; do
1219 history -s "$nextcmd"
1222 if [[ "${nextcmd}" =~ ^[0-9] ]]; then
1223 read count nextcmd <<<"${nextcmd}"
1225 read verb target opts <<<"${nextcmd}"
1226 target="${target%/}"
1227 target="${target/\/:/:}"
1244 argstarget=${target%:py3}
1245 testargs["$argstarget"]="${opts}"
1246 tt="${testfuncargs[${target}]}"
1248 while [ $count -gt 0 ]; do
1259 if [[ ${#successes[@]} -gt 0 || ${#failures[@]} -gt 0 ]]; then