sdk/cwl/test_with_arvbox.sh

   1 #!/bin/sh
   2
   3 set -x
   4
   5 if ! which arvbox >/dev/null ; then
   6     export PATH=$PATH:$(readlink -f $(dirname $0)/../../tools/arvbox/bin)
   7 fi
   8
   9 reset_container=1
  10 leave_running=0
  11 config=dev
  12 tag=""
  13
  14 while test -n "$1" ; do
  15     arg="$1"
  16     case "$arg" in
  17         --no-reset-container)
  18             reset_container=0
  19             shift
  20             ;;
  21         --leave-running)
  22             leave_running=1
  23             shift
  24             ;;
  25         --config)
  26             config=$2
  27             shift ; shift
  28             ;;
  29         --tag)
  30             tag=$2
  31             shift ; shift
  32             ;;
  33         -h|--help)
  34             echo "$0 [--no-reset-container] [--leave-running] [--config dev|localdemo] [--tag docker_tag]"
  35             exit
  36             ;;
  37         *)
  38             break
  39             ;;
  40     esac
  41 done
  42
  43 if test -z "$ARVBOX_CONTAINER" ; then
  44    export ARVBOX_CONTAINER=cwltest
  45 fi
  46
  47 if test $reset_container = 1 ; then
  48     arvbox reset -f
  49 fi
  50
  51 arvbox start $config $tag
  52
  53 arvbox pipe <<EOF
  54 set -eu -o pipefail
  55
  56 . /usr/local/lib/arvbox/common.sh
  57
  58 if test $config = dev ; then
  59   cd /usr/src/arvados/sdk/cwl
  60   python setup.py sdist
  61   pip_install \$(ls -r dist/arvados-cwl-runner-*.tar.gz | head -n1)
  62 fi
  63
  64 pip install cwltest
  65
  66 mkdir -p /tmp/cwltest
  67 cd /tmp/cwltest
  68 if ! test -d common-workflow-language ; then
  69   git clone https://github.com/common-workflow-language/common-workflow-language.git
  70 fi
  71 cd common-workflow-language
  72 git pull
  73 export ARVADOS_API_HOST=localhost:8000
  74 export ARVADOS_API_HOST_INSECURE=1
  75 export ARVADOS_API_TOKEN=\$(cat /var/lib/arvados/superuser_token)
  76
  77 arv-keepdocker --pull arvados/jobs latest
  78
  79 cat >/tmp/cwltest/arv-cwl-jobs <<EOF2
  80 #!/bin/sh
  81 exec arvados-cwl-runner --api=jobs --compute-checksum \\\$@
  82 EOF2
  83 chmod +x /tmp/cwltest/arv-cwl-jobs
  84
  85 cat >/tmp/cwltest/arv-cwl-containers <<EOF2
  86 #!/bin/sh
  87 exec arvados-cwl-runner --api=containers --compute-checksum \\\$@
  88 EOF2
  89 chmod +x /tmp/cwltest/arv-cwl-containers
  90
  91 env
  92 exec ./run_test.sh $@
  93 EOF
  94
  95 CODE=$?
  96
  97 if test $leave_running = 0 ; then
  98     arvbox stop
  99 fi
 100
 101 exit $CODE