apps/workbench/app/views/work_units/_component_detail.html.erb

   1 <%
   2   collections = [current_obj.outputs, current_obj.docker_image].flatten.compact.uniq
   3   collections_pdhs = collections.select {|x| !CollectionsHelper.match(x).nil?}.uniq.compact
   4   collections_uuids = collections - collections_pdhs
   5   preload_collections_for_objects collections_uuids if collections_uuids.any?
   6   preload_for_pdhs collections_pdhs if collections_pdhs.any?
   7
   8   preload_objects_for_dataclass(Repository, [current_obj.repository], :name) if current_obj.repository
   9 %>
  10
  11       <div class="container">
  12         <div class="row">
  13           <div class="col-md-5">
  14             <% if current_obj.uuid.nil? %>
  15               No <%= current_obj.title %> has been submitted yet.
  16             <% else %>
  17             <table>
  18               <% keys = [:uuid, :modified_by_user_uuid, :created_at, :started_at, :finished_at, :container_uuid] %>
  19               <% keys << :log_collection if @object.uuid != current_obj.uuid %>
  20               <% keys << :outputs %>
  21               <% keys.each do |k| %>
  22                 <%
  23                   val = current_obj.send(k) if current_obj.respond_to?(k)
  24                   if k == :outputs
  25                     has_val = val.andand.any?
  26                   elsif k == :log_collection and current_obj.state_label == "Running"
  27                     has_val = true
  28                   else
  29                     has_val = val
  30                   end
  31                 %>
  32                 <% if has_val %>
  33                 <tr>
  34                   <td style="padding-right: 1em">
  35                     <%= k.to_s %>:
  36                   </td>
  37                   <td>
  38                     <% if k == :uuid %>
  39                       <%= link_to_arvados_object_if_readable(val, val, link_text: val) %>
  40                     <% elsif k.to_s.end_with? 'uuid' %>
  41                       <%= link_to_arvados_object_if_readable(val, val, friendly_name: true) %>
  42                     <% elsif k.to_s.end_with? '_at' %>
  43                       <%= render_localized_date(val) %>
  44                     <% elsif k == :outputs and val.any? %>
  45                       <% if val.size == 1 %>
  46                         <%= link_to_arvados_object_if_readable(val[0], 'Output data not available', friendly_name: true) %>
  47                       <% else %>
  48                         <%= render partial: 'work_units/show_outputs', locals: {id: current_obj.uuid, outputs: val, align:""} %>
  49                       <% end %>
  50                     <% elsif k == :log_collection %>
  51                       <%= render partial: 'work_units/show_log_link', locals: {wu: current_obj} %>
  52                     <% else %>
  53                       <%= val %>
  54                     <% end %>
  55                   </td>
  56                 </tr>
  57                 <% end %>
  58               <% end %>
  59             </table>
  60             <% end %>
  61           </div>
  62           <div class="col-md-6">
  63             <table>
  64               <% # link to repo tree/file only if the repo is readable and the commit is a sha1
  65                  repo = (/^[0-9a-f]{40}$/ =~ current_obj.script_version and
  66                          current_obj.repository and
  67                          object_for_dataclass(Repository, current_obj.repository, :name))
  68                  repo = nil unless repo.andand.http_fetch_url
  69                  %>
  70               <% [:priority, :script, :repository, :script_version, :supplied_script_version, :nondeterministic,
  71                   :runtime_constraints].each do |k| %>
  72                 <% val = current_obj.send(k) if current_obj.respond_to?(k) %>
  73                 <% if val %>
  74                 <tr>
  75                   <td style="padding-right: 1em">
  76                     <%= k.to_s %>:
  77                   </td>
  78                   <td>
  79                     <% if repo and k == :repository %>
  80                       <%= link_to val, show_repository_tree_path(id: repo.uuid, commit: current_obj.script_version, path: '/') %>
  81                     <% elsif repo and k == :script %>
  82                       <%= link_to val, show_repository_blob_path(id: repo.uuid, commit: current_obj.script_version, path: 'crunch_scripts/'+current_obj.script) %>
  83                     <% elsif repo and k == :script_version %>
  84                       <%= link_to val, show_repository_commit_path(id: repo.uuid, commit: current_obj.script_version) %>
  85                     <% elsif k == :runtime_constraints and val.any? %>
  86                       <%= render partial: 'work_units/show_table_data', locals: {id: current_obj.uuid, name: k, data_map: val} %>
  87                     <% else %>
  88                       <%= val %>
  89                     <% end %>
  90                   </td>
  91                 </tr>
  92                 <% end %>
  93               <% end %>
  94
  95               <%
  96                 mounts = current_obj.send(:mounts) if current_obj.respond_to?(:mounts)
  97                 mount_wf = mounts.andand[:"/var/lib/cwl/workflow.json"]
  98                 mount_wf_cls = resource_class_for_uuid(mount_wf) if mount_wf
  99               %>
 100               <tr>
 101                 <% if mount_wf_cls == Collection %>
 102                   <td style="padding-right: 1em">
 103                     mount workflow:
 104                   </td>
 105                   <td>
 106                     <%= link_to_if_arvados_object mount_wf, friendly_name: true %>
 107                   </td>
 108                 <% end %>
 109               </tr>
 110
 111               <% if current_obj.runtime_constraints.andand[:docker_image] and current_obj.docker_image %>
 112                 <tr>
 113                   <td style="padding-right: 1em">
 114                     docker_image:
 115                   </td>
 116                   <td>
 117                     <%= current_obj.runtime_constraints[:docker_image] %>
 118                   </td>
 119                 </tr>
 120                 <tr>
 121                   <td style="padding-right: 1em">
 122                     docker_image_locator:
 123                   </td>
 124                   <td>
 125                     <%= link_to_arvados_object_if_readable(current_obj.docker_image,
 126                       current_obj.docker_image, friendly_name: true) %>
 127                   </td>
 128                 </tr>
 129               <% elsif current_obj.docker_image %>
 130                 <tr>
 131                   <td style="padding-right: 1em">
 132                     docker_image_locator:
 133                   </td>
 134                   <td>
 135                     <%= link_to_arvados_object_if_readable(current_obj.docker_image,
 136                       current_obj.docker_image, friendly_name: true) %>
 137                   </td>
 138                 </tr>
 139               <% end %>
 140             </table>
 141           </div>
 142
 143           <div class="col-md-11">
 144             <table>
 145               <% [:command].each do |k| %>
 146                 <% val = current_obj.send(k) if current_obj.respond_to?(k) %>
 147                 <% if val %>
 148                 <tr>
 149                   <td style="padding-right: 1em">
 150                     <%= k.to_s %>:
 151                   </td>
 152                   <td>
 153                     <% if k == :command %>
 154                       <div style="max-height:200px; border:1px solid; overflow-y:auto; padding-left: 1em; padding-right: 1em">
 155                         <%=val%>
 156                       </div>
 157                     <% else %>
 158                       <%= val %>
 159                     <% end %>
 160                   </td>
 161                 </tr>
 162                 <% end %>
 163               <% end %>
 164
 165               <%
 166                 mounts = current_obj.send(:mounts) if current_obj.respond_to?(:mounts)
 167                 input_obj =mounts.andand[:"/var/lib/cwl/cwl.input.json"].andand[:content] || mounts || {}
 168                 mnt_inputs = []
 169                 cwl_input_collections(input_obj) do |_, path|
 170                   mnt_inputs << path
 171                 end
 172                 mnt_inputs = mnt_inputs.uniq.compact
 173               %>
 174               <tr>
 175                 <% if mnt_inputs.any? %>
 176                   <td style="padding-right: 1em">
 177                     input_mounts:
 178                   </td>
 179                   <td>
 180                     <%= render partial: 'work_units/show_inputs',
 181                                         locals: {id: current_obj.uuid, name: 'mount-inputs', inputs: mnt_inputs} %>
 182                   </td>
 183                 <% end %>
 184               </tr>
 185             </table>
 186           </div>
 187
 188         </div>
 189
 190         <% if current_obj.parameters and !current_obj.parameters.empty? %>
 191         <div class="row">
 192           <div class="col-md-6">
 193             <p>script_parameters:</p>
 194             <pre><%= JSON.pretty_generate(current_obj.parameters) rescue nil %></pre>
 195           </div>
 196         </div>
 197         <% end %>
 198       </div>