services/api/app/controllers/arvados/v1/collections_controller.rb

   1 require "arvados/keep"
   2
   3 class Arvados::V1::CollectionsController < ApplicationController
   4   include DbCurrentTime
   5
   6   def create
   7     if resource_attrs[:uuid] and (loc = Keep::Locator.parse(resource_attrs[:uuid]))
   8       resource_attrs[:portable_data_hash] = loc.to_s
   9       resource_attrs.delete :uuid
  10     end
  11     super
  12   end
  13
  14   def find_objects_for_index
  15     if params[:include_trash] || ['destroy', 'trash', 'untrash'].include?(action_name)
  16       @objects = Collection.readable_by(*@read_users).unscoped
  17     end
  18     super
  19   end
  20
  21   def find_object_by_uuid
  22     if loc = Keep::Locator.parse(params[:id])
  23       loc.strip_hints!
  24       if c = Collection.readable_by(*@read_users).where({ portable_data_hash: loc.to_s }).limit(1).first
  25         @object = {
  26           uuid: c.portable_data_hash,
  27           portable_data_hash: c.portable_data_hash,
  28           manifest_text: c.signed_manifest_text,
  29         }
  30       end
  31       true
  32     else
  33       super
  34     end
  35   end
  36
  37   def show
  38     if @object.is_a? Collection
  39       # Omit unsigned_manifest_text
  40       @select ||= model_class.selectable_attributes - ["unsigned_manifest_text"]
  41       super
  42     else
  43       send_json @object
  44     end
  45   end
  46
  47   def destroy
  48     if !@object.is_trashed
  49       @object.update_attributes!(trash_at: db_current_time)
  50     end
  51     earliest_delete = (@object.trash_at +
  52                        Rails.configuration.blob_signature_ttl.seconds)
  53     if @object.delete_at > earliest_delete
  54       @object.update_attributes!(delete_at: earliest_delete)
  55     end
  56     show
  57   end
  58
  59   def trash
  60     if !@object.is_trashed
  61       @object.update_attributes!(trash_at: db_current_time)
  62     end
  63     show
  64   end
  65
  66   def untrash
  67     if @object.is_trashed
  68       @object.update_attributes!(trash_at: nil)
  69     else
  70       raise InvalidStateTransitionError
  71     end
  72     show
  73   end
  74
  75   def find_collections(visited, sp, &b)
  76     case sp
  77     when ArvadosModel
  78       sp.class.columns.each do |c|
  79         find_collections(visited, sp[c.name.to_sym], &b) if c.name != "log"
  80       end
  81     when Hash
  82       sp.each do |k, v|
  83         find_collections(visited, v, &b)
  84       end
  85     when Array
  86       sp.each do |v|
  87         find_collections(visited, v, &b)
  88       end
  89     when String
  90       if m = /[a-f0-9]{32}\+\d+/.match(sp)
  91         yield m[0], nil
  92       elsif m = Collection.uuid_regex.match(sp)
  93         yield nil, m[0]
  94       end
  95     end
  96   end
  97
  98   def search_edges(visited, uuid, direction)
  99     if uuid.nil? or uuid.empty? or visited[uuid]
 100       return
 101     end
 102
 103     if loc = Keep::Locator.parse(uuid)
 104       loc.strip_hints!
 105       return if visited[loc.to_s]
 106     end
 107
 108     logger.debug "visiting #{uuid}"
 109
 110     if loc
 111       # uuid is a portable_data_hash
 112       collections = Collection.readable_by(*@read_users).where(portable_data_hash: loc.to_s)
 113       c = collections.limit(2).all
 114       if c.size == 1
 115         visited[loc.to_s] = c[0]
 116       elsif c.size > 1
 117         name = collections.limit(1).where("name <> ''").first
 118         if name
 119           visited[loc.to_s] = {
 120             portable_data_hash: c[0].portable_data_hash,
 121             name: "#{name.name} + #{collections.count-1} more"
 122           }
 123         else
 124           visited[loc.to_s] = {
 125             portable_data_hash: c[0].portable_data_hash,
 126             name: loc.to_s
 127           }
 128         end
 129       end
 130
 131       if direction == :search_up
 132         # Search upstream for jobs where this locator is the output of some job
 133         Job.readable_by(*@read_users).where(output: loc.to_s).each do |job|
 134           search_edges(visited, job.uuid, :search_up)
 135         end
 136
 137         Job.readable_by(*@read_users).where(log: loc.to_s).each do |job|
 138           search_edges(visited, job.uuid, :search_up)
 139         end
 140       elsif direction == :search_down
 141         if loc.to_s == "d41d8cd98f00b204e9800998ecf8427e+0"
 142           # Special case, don't follow the empty collection.
 143           return
 144         end
 145
 146         # Search downstream for jobs where this locator is in script_parameters
 147         Job.readable_by(*@read_users).where(["jobs.script_parameters like ?", "%#{loc.to_s}%"]).each do |job|
 148           search_edges(visited, job.uuid, :search_down)
 149         end
 150
 151         Job.readable_by(*@read_users).where(["jobs.docker_image_locator = ?", "#{loc.to_s}"]).each do |job|
 152           search_edges(visited, job.uuid, :search_down)
 153         end
 154       end
 155     else
 156       # uuid is a regular Arvados UUID
 157       rsc = ArvadosModel::resource_class_for_uuid uuid
 158       if rsc == Job
 159         Job.readable_by(*@read_users).where(uuid: uuid).each do |job|
 160           visited[uuid] = job.as_api_response
 161           if direction == :search_up
 162             # Follow upstream collections referenced in the script parameters
 163             find_collections(visited, job) do |hash, col_uuid|
 164               search_edges(visited, hash, :search_up) if hash
 165               search_edges(visited, col_uuid, :search_up) if col_uuid
 166             end
 167           elsif direction == :search_down
 168             # Follow downstream job output
 169             search_edges(visited, job.output, direction)
 170           end
 171         end
 172       elsif rsc == Collection
 173         if c = Collection.readable_by(*@read_users).where(uuid: uuid).limit(1).first
 174           search_edges(visited, c.portable_data_hash, direction)
 175           visited[c.portable_data_hash] = c.as_api_response
 176         end
 177       elsif rsc != nil
 178         rsc.where(uuid: uuid).each do |r|
 179           visited[uuid] = r.as_api_response
 180         end
 181       end
 182     end
 183
 184     if direction == :search_up
 185       # Search for provenance links pointing to the current uuid
 186       Link.readable_by(*@read_users).
 187         where(head_uuid: uuid, link_class: "provenance").
 188         each do |link|
 189         visited[link.uuid] = link.as_api_response
 190         search_edges(visited, link.tail_uuid, direction)
 191       end
 192     elsif direction == :search_down
 193       # Search for provenance links emanating from the current uuid
 194       Link.readable_by(current_user).
 195         where(tail_uuid: uuid, link_class: "provenance").
 196         each do |link|
 197         visited[link.uuid] = link.as_api_response
 198         search_edges(visited, link.head_uuid, direction)
 199       end
 200     end
 201   end
 202
 203   def provenance
 204     visited = {}
 205     search_edges(visited, @object[:portable_data_hash], :search_up)
 206     search_edges(visited, @object[:uuid], :search_up)
 207     send_json visited
 208   end
 209
 210   def used_by
 211     visited = {}
 212     search_edges(visited, @object[:uuid], :search_down)
 213     search_edges(visited, @object[:portable_data_hash], :search_down)
 214     send_json visited
 215   end
 216
 217   protected
 218
 219   def load_limit_offset_order_params *args
 220     super
 221     if action_name == 'index'
 222       # Omit manifest_text and unsigned_manifest_text from index results unless expressly selected.
 223       @select ||= model_class.selectable_attributes - ["manifest_text", "unsigned_manifest_text"]
 224     end
 225   end
 226 end