apps/workbench/app/controllers/pipeline_instances_controller.rb

   1 class PipelineInstancesController < ApplicationController
   2   skip_before_filter :find_object_by_uuid, only: :compare
   3   before_filter :find_objects_by_uuid, only: :compare
   4   include PipelineInstancesHelper
   5   include PipelineComponentsHelper
   6
   7   def copy
   8     template = PipelineTemplate.find?(@object.pipeline_template_uuid)
   9
  10     source = @object
  11     @object = PipelineInstance.new
  12     @object.pipeline_template_uuid = source.pipeline_template_uuid
  13
  14     if params['components'] == 'use_latest' and template
  15       @object.components = template.components.deep_dup
  16       @object.components.each do |cname, component|
  17         # Go through the script parameters of each component
  18         # that are marked as user input and copy them over.
  19         # Skip any components that are not present in the
  20         # source instance (there's nothing to copy)
  21         if source.components.include? cname
  22           component[:script_parameters].each do |pname, val|
  23             if val.is_a? Hash and val[:dataclass]
  24               # this is user-inputtable, so check the value from the source pipeline
  25               srcvalue = source.components[cname][:script_parameters][pname]
  26               if not srcvalue.nil?
  27                 component[:script_parameters][pname] = srcvalue
  28               end
  29             end
  30           end
  31         end
  32       end
  33     else
  34       @object.components = source.components.deep_dup
  35     end
  36
  37     if params['script'] == 'use_same'
  38       # Go through each component and copy the script_version from each job.
  39       @object.components.each do |cname, component|
  40         if source.components.include? cname and source.components[cname][:job]
  41           component[:script_version] = source.components[cname][:job][:script_version]
  42         end
  43       end
  44     end
  45
  46     @object.components.each do |cname, component|
  47       component.delete :job
  48     end
  49     @object.state = 'New'
  50
  51     # set owner_uuid to that of source, provided it is a project and wriable by current user
  52     current_project = Group.find(source.owner_uuid) rescue nil
  53     if (current_project && current_project.writable_by.andand.include?(current_user.uuid))
  54       @object.owner_uuid = source.owner_uuid
  55     end
  56
  57     super
  58   end
  59
  60   def update
  61     @updates ||= params[@object.class.to_s.underscore.singularize.to_sym]
  62     if (components = @updates[:components])
  63       components.each do |cname, component|
  64         if component[:script_parameters]
  65           component[:script_parameters].each do |param, value_info|
  66             if value_info.is_a? Hash
  67               if resource_class_for_uuid(value_info[:value]) == Link
  68                 # Use the link target, not the link itself, as script
  69                 # parameter; but keep the link info around as well.
  70                 link = Link.find value_info[:value]
  71                 value_info[:value] = link.head_uuid
  72                 value_info[:link_uuid] = link.uuid
  73                 value_info[:link_name] = link.name
  74               else
  75                 # Delete stale link_uuid and link_name data.
  76                 value_info[:link_uuid] = nil
  77                 value_info[:link_name] = nil
  78               end
  79             end
  80           end
  81         end
  82       end
  83     end
  84     super
  85   end
  86
  87   def graph(pipelines)
  88     return nil, nil if params['tab_pane'] != "Graph"
  89
  90     count = {}
  91     provenance = {}
  92     pips = {}
  93     n = 1
  94
  95     pipelines.each do |p|
  96       collections = []
  97
  98       p.components.each do |k, v|
  99         j = v[:job] || next
 100
 101         uuid = j[:uuid].intern
 102         provenance[uuid] = j
 103         pips[uuid] = 0 unless pips[uuid] != nil
 104         pips[uuid] |= n
 105
 106         collections << j[:output]
 107         ProvenanceHelper::find_collections(j[:script_parameters]).each do |k|
 108           collections << k
 109         end
 110
 111         uuid = j[:script_version].intern
 112         provenance[uuid] = {:uuid => uuid}
 113         pips[uuid] = 0 unless pips[uuid] != nil
 114         pips[uuid] |= n
 115       end
 116
 117       Collection.where(uuid: collections.compact).each do |c|
 118         uuid = c.uuid.intern
 119         provenance[uuid] = c
 120         pips[uuid] = 0 unless pips[uuid] != nil
 121         pips[uuid] |= n
 122       end
 123
 124       n = n << 1
 125     end
 126
 127     return provenance, pips
 128   end
 129
 130   def show
 131     @pipelines = [@object]
 132
 133     if params[:compare]
 134       PipelineInstance.where(uuid: params[:compare]).each do |p|
 135         @pipelines << p
 136       end
 137     end
 138
 139     provenance, pips = graph(@pipelines)
 140     if provenance
 141       @prov_svg = ProvenanceHelper::create_provenance_graph provenance, "provenance_svg", {
 142         :request => request,
 143         :all_script_parameters => true,
 144         :combine_jobs => :script_and_version,
 145         :script_version_nodes => true,
 146         :pips => pips }
 147     end
 148
 149     super
 150   end
 151
 152   def compare
 153     @breadcrumb_page_name = 'compare'
 154
 155     @rows = []          # each is {name: S, components: [...]}
 156
 157     if params['tab_pane'] == "Compare" or params['tab_pane'].nil?
 158       # Build a table: x=pipeline y=component
 159       @objects.each_with_index do |pi, pi_index|
 160         pipeline_jobs(pi).each do |component|
 161           # Find a cell with the same name as this component but no
 162           # entry for this pipeline
 163           target_row = nil
 164           @rows.each_with_index do |row, row_index|
 165             if row[:name] == component[:name] and !row[:components][pi_index]
 166               target_row = row
 167             end
 168           end
 169           if !target_row
 170             target_row = {name: component[:name], components: []}
 171             @rows << target_row
 172           end
 173           target_row[:components][pi_index] = component
 174         end
 175       end
 176
 177       @rows.each do |row|
 178         # Build a "normal" pseudo-component for this row by picking the
 179         # most common value for each attribute. If all values are
 180         # equally common, there is no "normal".
 181         normal = {}              # attr => most common value
 182         highscore = {}           # attr => how common "normal" is
 183         score = {}               # attr => { value => how common }
 184         row[:components].each do |pj|
 185           next if pj.nil?
 186           pj.each do |k,v|
 187             vstr = for_comparison v
 188             score[k] ||= {}
 189             score[k][vstr] = (score[k][vstr] || 0) + 1
 190             highscore[k] ||= 0
 191             if score[k][vstr] == highscore[k]
 192               # tie for first place = no "normal"
 193               normal.delete k
 194             elsif score[k][vstr] == highscore[k] + 1
 195               # more pipelines have v than anything else
 196               highscore[k] = score[k][vstr]
 197               normal[k] = vstr
 198             end
 199           end
 200         end
 201
 202         # Add a hash in component[:is_normal]: { attr => is_the_value_normal? }
 203         row[:components].each do |pj|
 204           next if pj.nil?
 205           pj[:is_normal] = {}
 206           pj.each do |k,v|
 207             pj[:is_normal][k] = (normal.has_key?(k) && normal[k] == for_comparison(v))
 208           end
 209         end
 210       end
 211     end
 212
 213     if params['tab_pane'] == "Graph"
 214       provenance, pips = graph(@objects)
 215
 216       @pipelines = @objects
 217
 218       if provenance
 219         @prov_svg = ProvenanceHelper::create_provenance_graph provenance, "provenance_svg", {
 220           :request => request,
 221           :all_script_parameters => true,
 222           :combine_jobs => :script_and_version,
 223           :script_version_nodes => true,
 224           :pips => pips }
 225       end
 226     end
 227
 228     @object = @objects.first
 229
 230     show
 231   end
 232
 233   def show_pane_list
 234     panes = %w(Components Log Graph Advanced)
 235     if @object and @object.state.in? ['New', 'Ready']
 236       panes = %w(Inputs) + panes - %w(Log)
 237     end
 238     if not @object.components.values.any? { |x| x[:job] rescue false }
 239       panes -= ['Graph']
 240     end
 241     panes
 242   end
 243
 244   def compare_pane_list
 245     %w(Compare Graph)
 246   end
 247
 248   def index
 249     @limit = 20
 250     super
 251   end
 252
 253   protected
 254   def for_comparison v
 255     if v.is_a? Hash or v.is_a? Array
 256       v.to_json
 257     else
 258       v.to_s
 259     end
 260   end
 261
 262   def find_objects_by_uuid
 263     @objects = model_class.where(uuid: params[:uuids])
 264   end
 265
 266 end