src/index.tsx

   1 // Copyright (C) The Arvados Authors. All rights reserved.
   2 //
   3 // SPDX-License-Identifier: AGPL-3.0
   4
   5 import * as React from 'react';
   6 import * as ReactDOM from 'react-dom';
   7 import { Provider } from "react-redux";
   8 import { MainPanel } from './views/main-panel/main-panel';
   9 import './index.css';
  10 import { Route } from 'react-router';
  11 import createBrowserHistory from "history/createBrowserHistory";
  12 import { History } from "history";
  13 import { configureStore, RootStore } from './store/store';
  14 import { ConnectedRouter } from "react-router-redux";
  15 import { ApiToken } from "./views-components/api-token/api-token";
  16 import { initAuth } from "./store/auth/auth-action";
  17 import { createServices } from "./services/services";
  18 import { MuiThemeProvider } from '@material-ui/core/styles';
  19 import { CustomTheme } from './common/custom-theme';
  20 import { fetchConfig } from './common/config';
  21 import { addMenuActionSet, ContextMenuKind } from './views-components/context-menu/context-menu';
  22 import { rootProjectActionSet } from "./views-components/context-menu/action-sets/root-project-action-set";
  23 import { projectActionSet } from "./views-components/context-menu/action-sets/project-action-set";
  24 import { resourceActionSet } from './views-components/context-menu/action-sets/resource-action-set';
  25 import { favoriteActionSet } from "./views-components/context-menu/action-sets/favorite-action-set";
  26 import { collectionFilesActionSet } from './views-components/context-menu/action-sets/collection-files-action-set';
  27 import { collectionFilesItemActionSet } from './views-components/context-menu/action-sets/collection-files-item-action-set';
  28 import { collectionActionSet } from './views-components/context-menu/action-sets/collection-action-set';
  29 import { collectionResourceActionSet } from './views-components/context-menu/action-sets/collection-resource-action-set';
  30 import { processActionSet } from './views-components/context-menu/action-sets/process-action-set';
  31 import { loadWorkbench } from './store/workbench/workbench-actions';
  32 import { Routes } from '~/routes/routes';
  33 import { trashActionSet } from "~/views-components/context-menu/action-sets/trash-action-set";
  34 import { ServiceRepository } from '~/services/services';
  35 import { initWebSocket } from '~/websocket/websocket';
  36 import { Config } from '~/common/config';
  37 import { addRouteChangeHandlers } from './routes/route-change-handlers';
  38 import { setCurrentTokenDialogApiHost } from '~/store/current-token-dialog/current-token-dialog-actions';
  39 import { processResourceActionSet } from '~/views-components/context-menu/action-sets/process-resource-action-set';
  40 import { progressIndicatorActions } from '~/store/progress-indicator/progress-indicator-actions';
  41 import { setUuidPrefix } from '~/store/workflow-panel/workflow-panel-actions';
  42 import { trashedCollectionActionSet } from '~/views-components/context-menu/action-sets/trashed-collection-action-set';
  43 import { ContainerRequestState } from '~/models/container-request';
  44 import { MountKind } from './models/mount-types';
  45 import { setBuildInfo } from '~/store/app-info/app-info-actions';
  46 import { getBuildInfo } from '~/common/app-info';
  47
  48 console.log(`Starting arvados [${getBuildInfo()}]`);
  49
  50 addMenuActionSet(ContextMenuKind.ROOT_PROJECT, rootProjectActionSet);
  51 addMenuActionSet(ContextMenuKind.PROJECT, projectActionSet);
  52 addMenuActionSet(ContextMenuKind.RESOURCE, resourceActionSet);
  53 addMenuActionSet(ContextMenuKind.FAVORITE, favoriteActionSet);
  54 addMenuActionSet(ContextMenuKind.COLLECTION_FILES, collectionFilesActionSet);
  55 addMenuActionSet(ContextMenuKind.COLLECTION_FILES_ITEM, collectionFilesItemActionSet);
  56 addMenuActionSet(ContextMenuKind.COLLECTION, collectionActionSet);
  57 addMenuActionSet(ContextMenuKind.COLLECTION_RESOURCE, collectionResourceActionSet);
  58 addMenuActionSet(ContextMenuKind.TRASHED_COLLECTION, trashedCollectionActionSet);
  59 addMenuActionSet(ContextMenuKind.PROCESS, processActionSet);
  60 addMenuActionSet(ContextMenuKind.PROCESS_RESOURCE, processResourceActionSet);
  61 addMenuActionSet(ContextMenuKind.TRASH, trashActionSet);
  62
  63 fetchConfig()
  64     .then(({ config, apiHost }) => {
  65         const history = createBrowserHistory();
  66         const services = createServices(config, {
  67             progressFn: (id, working) => {
  68                 store.dispatch(progressIndicatorActions.TOGGLE_WORKING({ id, working }));
  69             },
  70             errorFn: (id, error) => {
  71                 // console.error("Backend error:", error);
  72                 // store.dispatch(snackbarActions.OPEN_SNACKBAR({ message: "Backend error", kind: SnackbarKind.ERROR }));
  73             }
  74         });
  75         const store = configureStore(history, services);
  76
  77         store.subscribe(initListener(history, store, services, config));
  78         store.dispatch(initAuth());
  79         store.dispatch(setBuildInfo());
  80         store.dispatch(setCurrentTokenDialogApiHost(apiHost));
  81         store.dispatch(setUuidPrefix(config.uuidPrefix));
  82
  83         const TokenComponent = (props: any) => <ApiToken authService={services.authService} {...props} />;
  84         const MainPanelComponent = (props: any) => <MainPanel {...props} />;
  85
  86         const App = () =>
  87             <MuiThemeProvider theme={CustomTheme}>
  88                 <Provider store={store}>
  89                     <ConnectedRouter history={history}>
  90                         <div>
  91                             <Route path={Routes.TOKEN} component={TokenComponent} />
  92                             <Route path={Routes.ROOT} component={MainPanelComponent} />
  93                         </div>
  94                     </ConnectedRouter>
  95                 </Provider>
  96             </MuiThemeProvider>;
  97
  98         ReactDOM.render(
  99             <App />,
 100             document.getElementById('root') as HTMLElement
 101         );
 102     });
 103
 104 const initListener = (history: History, store: RootStore, services: ServiceRepository, config: Config) => {
 105     let initialized = false;
 106     return async () => {
 107         const { router, auth } = store.getState();
 108         if (router.location && auth.user && !initialized) {
 109             initialized = true;
 110             initWebSocket(config, services.authService, store);
 111             await store.dispatch(loadWorkbench());
 112             addRouteChangeHandlers(history, store);
 113             // createEnumCollectorWorkflow(services);
 114         }
 115     };
 116 };
 117
 118 const createPrimitivesCollectorWorkflow = ({workflowService}:ServiceRepository) => {
 119     workflowService.create({
 120             name: 'Primitive values collector',
 121             description: 'Workflow for collecting primitive values',
 122             definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n  requirements:\n  - listing:\n    - entryname: input_collector.log\n      entry: |\n        \"flag\":\n          $(inputs.example_flag)\n        \"string\":\n          $(inputs.example_string)\n        \"int\":\n          $(inputs.example_int)\n        \"long\":\n          $(inputs.example_long)\n        \"float\":\n          $(inputs.example_float)\n        \"double\":\n          $(inputs.example_double)\n    class: InitialWorkDirRequirement\n  inputs:\n  - type: double\n    id: '#input_collector.cwl/example_double'\n  - type: boolean\n    id: '#input_collector.cwl/example_flag'\n  - type: float\n    id: '#input_collector.cwl/example_float'\n  - type: int\n    id: '#input_collector.cwl/example_int'\n  - type: long\n    id: '#input_collector.cwl/example_long'\n  - type: string\n    id: '#input_collector.cwl/example_string'\n  outputs:\n  - type: File\n    outputBinding:\n      glob: '*'\n    id: '#input_collector.cwl/output'\n  baseCommand: [echo]\n  id: '#input_collector.cwl'\n- class: Workflow\n  doc: Workflw for collecting primitive values\n  inputs:\n  - type: double\n    label: Double value\n    doc: This should allow for entering a decimal number (64-bit).\n    id: '#main/example_double'\n    default: 0.3333333333333333\n  - type: boolean\n    label: Boolean Flag\n    doc: This should render as in checkbox.\n    id: '#main/example_flag'\n    default: true\n  - type: float\n    label: Float value\n    doc: This should allow for entering a decimal number (32-bit).\n    id: '#main/example_float'\n    default: 0.15625\n  - type: int\n    label: Integer Number\n    doc: This should allow for entering a number (32-bit signed).\n    id: '#main/example_int'\n    default: 2147483647\n  - type: long\n    label: Long Number\n    doc: This should allow for entering a number (64-bit signed).\n    id: '#main/example_long'\n    default: 9223372036854775807\n  - type: string\n    label: Freetext\n    doc: This should allow for entering an arbitrary char sequence.\n    id: '#main/example_string'\n    default: This is a string\n  outputs:\n  - type: File\n    outputSource: '#main/input_collector/output'\n    id: '#main/log_file'\n  steps:\n  - run: '#input_collector.cwl'\n    in:\n    - source: '#main/example_double'\n      id: '#main/input_collector/example_double'\n    - source: '#main/example_flag'\n      id: '#main/input_collector/example_flag'\n    - source: '#main/example_float'\n      id: '#main/input_collector/example_float'\n    - source: '#main/example_int'\n      id: '#main/input_collector/example_int'\n    - source: '#main/example_long'\n      id: '#main/input_collector/example_long'\n    - source: '#main/example_string'\n      id: '#main/input_collector/example_string'\n    out: ['#main/input_collector/output']\n    id: '#main/input_collector'\n  id: '#main'\n",
 123         });
 124 };
 125
 126 const createEnumCollectorWorkflow = ({workflowService}:ServiceRepository) => {
 127     workflowService.create({
 128             name: 'Enum values collector',
 129             description: 'Workflow for collecting enum values',
 130             definition: "cwlVersion: v1.0\n$graph:\n- class: CommandLineTool\n  requirements:\n  - listing:\n    - entryname: input_collector.log\n      entry: |\n        \"enum_type\":\n          $(inputs.enum_type)\n\n    class: InitialWorkDirRequirement\n  inputs:\n  - type:\n      type: enum\n      symbols: ['#input_collector.cwl/enum_type/OTU table', '#input_collector.cwl/enum_type/Pathway\n          table', '#input_collector.cwl/enum_type/Function table', '#input_collector.cwl/enum_type/Ortholog\n          table']\n    id: '#input_collector.cwl/enum_type'\n  outputs:\n  - type: File\n    outputBinding:\n      glob: '*'\n    id: '#input_collector.cwl/output'\n  baseCommand: [echo]\n  id: '#input_collector.cwl'\n- class: Workflow\n  doc: This is the description of the workflow\n  inputs:\n  - type:\n      type: enum\n      symbols: ['#main/enum_type/OTU table', '#main/enum_type/Pathway table', '#main/enum_type/Function\n          table', '#main/enum_type/Ortholog table']\n      name: '#enum_typef4179c7f-45f9-482d-a5db-1abb86698384'\n    label: Enumeration Type\n    doc: This should render as a drop-down menu.\n    id: '#main/enum_type'\n    default: OTU table\n  outputs:\n  - type: File\n    outputSource: '#main/input_collector/output'\n    id: '#main/log_file'\n  steps:\n  - run: '#input_collector.cwl'\n    in:\n    - source: '#main/enum_type'\n      id: '#main/input_collector/enum_type'\n    out: ['#main/input_collector/output']\n    id: '#main/input_collector'\n  id: '#main'\n",
 131         });
 132 };
 133
 134 const createSampleProcess = ({ containerRequestService }: ServiceRepository) => {
 135     containerRequestService.create({
 136         ownerUuid: 'c97qk-j7d0g-s3ngc1z0748hsmf',
 137         name: 'Simple process 7',
 138         state: ContainerRequestState.COMMITTED,
 139         mounts: {
 140             '/var/spool/cwl': {
 141                 kind: MountKind.COLLECTION,
 142                 writable: true,
 143             },
 144             'stdout': {
 145                 kind: MountKind.MOUNTED_FILE,
 146                 path: '/var/spool/cwl/cwl.output.json'
 147             },
 148             '/var/lib/cwl/workflow.json': {
 149                 kind: MountKind.JSON,
 150                 content: {
 151                     "cwlVersion": "v1.0",
 152                     "$graph": [
 153                         {
 154                             "class": "CommandLineTool",
 155                             "requirements": [
 156                                 {
 157                                   "listing": [
 158                                     {
 159                                       "entryname": "input_collector.log",
 160                                       "entry": "$(inputs.single_file.basename)\n"
 161                                     }
 162                                   ],
 163                                   "class": "InitialWorkDirRequirement"
 164                                 }
 165                               ],
 166                             "inputs": [
 167                                 {
 168                                     "type": "File",
 169                                     "id": "#input_collector.cwl/single_file"
 170                                 }
 171                             ],
 172                             "outputs": [
 173                                 {
 174                                     "type": "File",
 175                                     "outputBinding": {
 176                                         "glob": "*"
 177                                     },
 178                                     "id": "#input_collector.cwl/output"
 179                                 }
 180                             ],
 181                             "baseCommand": [
 182                                 "echo"
 183                             ],
 184                             "id": "#input_collector.cwl"
 185                         },
 186                         {
 187                             "class": "Workflow",
 188                             "doc": "This is the description of the workflow",
 189                             "inputs": [
 190                                 {
 191                                     "type": "File",
 192                                     "label": "Single File",
 193                                     "doc": "This should allow for single File selection only.",
 194                                     "id": "#main/single_file"
 195                                 }
 196                             ],
 197                             "outputs": [
 198                                 {
 199                                     "type": "File",
 200                                     "outputSource": "#main/input_collector/output",
 201                                     "id": "#main/log_file"
 202                                 }
 203                             ],
 204                             "steps": [
 205                                 {
 206                                     "run": "#input_collector.cwl",
 207                                     "in": [
 208                                         {
 209                                             "source": "#main/single_file",
 210                                             "id": "#main/input_collector/single_file"
 211                                         }
 212                                     ],
 213                                     "out": [
 214                                         "#main/input_collector/output"
 215                                     ],
 216                                     "id": "#main/input_collector"
 217                                 }
 218                             ],
 219                             "id": "#main"
 220                         }
 221                     ]
 222                 },
 223             },
 224             '/var/lib/cwl/cwl.input.json': {
 225                 kind: MountKind.JSON,
 226                 content: {
 227                     "single_file": {
 228                         "class": "File",
 229                         "location": "keep:233454526794c0a2d56a305baeff3d30+145/1.txt",
 230                         "basename": "fileA"
 231                       }
 232                 },
 233             }
 234         },
 235         runtimeConstraints: {
 236             API: true,
 237             vcpus: 1,
 238             ram: 1073741824,
 239         },
 240         containerImage: 'arvados/jobs:1.1.4.20180618144723',
 241         cwd: '/var/spool/cwl',
 242         command: [
 243             'arvados-cwl-runner',
 244             '--local',
 245             '--api=containers',
 246             "--project-uuid=c97qk-j7d0g-s3ngc1z0748hsmf",
 247             '/var/lib/cwl/workflow.json#main',
 248             '/var/lib/cwl/cwl.input.json'
 249         ],
 250         outputPath: '/var/spool/cwl',
 251         priority: 1,
 252     });
 253 };
 254