doc/_config.yml

   1 # baseurl is the location of the generated site from the browser's
   2 # perspective (e.g., http://doc.arvados.org or
   3 # file:///tmp/arvados/doc/.site). To make docs show up inside
   4 # workbench, use /doc here and add a symlink at
   5 # apps/workbench/public/doc pointing to ../../../doc/.site
   6 # You can also set these on the command line:
   7 # $ rake generate baseurl=/example arvados_api_host=example.com
   8
   9 baseurl:
  10 arvados_api_host: localhost
  11 arvados_workbench_host: http://localhost
  12
  13 exclude: ["Rakefile", "tmp", "vendor"]
  14
  15 navbar:
  16   #start:
  17     #- Getting Started:
  18       #- start/index.html.textile.liquid
  19     #- Quickstart:
  20       #- start/getting_started/publicproject.html.textile.liquid
  21       #- start/getting_started/firstpipeline.html.textile.liquid
  22     #- Common Use Cases:
  23       #- start/getting_started/sharedata.html.textile.liquid
  24     #- Next Steps:
  25       #- start/getting_started/nextsteps.html.textile.liquid
  26
  27   userguide:
  28     - Welcome:
  29       - user/index.html.textile.liquid
  30       - user/getting_started/community.html.textile.liquid
  31     - Run a workflow using Workbench:
  32       - user/getting_started/workbench.html.textile.liquid
  33       - user/tutorials/tutorial-workflow-workbench.html.textile.liquid
  34     - Access an Arvados virtual machine:
  35       - user/getting_started/vm-login-with-webshell.html.textile.liquid
  36       - user/getting_started/ssh-access-unix.html.textile.liquid
  37       - user/getting_started/ssh-access-windows.html.textile.liquid
  38       - user/getting_started/check-environment.html.textile.liquid
  39       - user/reference/api-tokens.html.textile.liquid
  40     - Working with data sets:
  41       - user/tutorials/tutorial-keep.html.textile.liquid
  42       - user/tutorials/tutorial-keep-get.html.textile.liquid
  43       - user/tutorials/tutorial-keep-data-lifecycle.html.textile.liquid
  44       - user/tutorials/tutorial-keep-mount.html.textile.liquid
  45       - user/topics/keep.html.textile.liquid
  46       - user/topics/arv-copy.html.textile.liquid
  47     - Running workflows at the command line:
  48       - user/cwl/cwl-runner.html.textile.liquid
  49       - user/cwl/cwl-run-options.html.textile.liquid
  50       - user/topics/running-pipeline-command-line.html.textile.liquid
  51       - user/topics/arv-run.html.textile.liquid
  52     - Working with git repositories:
  53       - user/tutorials/add-new-repository.html.textile.liquid
  54       - user/tutorials/git-arvados-guide.html.textile.liquid
  55     - Develop an Arvados workflow:
  56       - user/tutorials/intro-crunch.html.textile.liquid
  57       - user/tutorials/writing-cwl-workflow.html.textile.liquid
  58       - user/cwl/cwl-style.html.textile.liquid
  59       - user/cwl/cwl-extensions.html.textile.liquid
  60       - user/topics/arv-docker.html.textile.liquid
  61       - user/tutorials/running-external-program.html.textile.liquid
  62       - user/topics/crunch-tools-overview.html.textile.liquid
  63       - user/tutorials/tutorial-firstscript.html.textile.liquid
  64       - user/tutorials/tutorial-submit-job.html.textile.liquid
  65       - user/topics/tutorial-parallel.html.textile.liquid
  66     - Develop a web service:
  67       - user/topics/arv-web.html.textile.liquid
  68     - Reference:
  69       - user/topics/run-command.html.textile.liquid
  70       - user/reference/job-pipeline-ref.html.textile.liquid
  71       - user/examples/crunch-examples.html.textile.liquid
  72     - Query the metadata database:
  73       - user/topics/tutorial-trait-search.html.textile.liquid
  74     - Arvados License:
  75       - user/copying/copying.html.textile.liquid
  76       - user/copying/agpl-3.0.html
  77       - user/copying/LICENSE-2.0.html
  78       - user/copying/by-sa-3.0.html
  79   sdk:
  80     - Overview:
  81       - sdk/index.html.textile.liquid
  82     - Python:
  83       - sdk/python/sdk-python.html.textile.liquid
  84       - sdk/python/example.html.textile.liquid
  85       - sdk/python/python.html.textile.liquid
  86       - sdk/python/crunch-utility-libraries.html.textile.liquid
  87       - sdk/python/events.html.textile.liquid
  88     - CLI:
  89       - sdk/cli/install.html.textile.liquid
  90       - sdk/cli/index.html.textile.liquid
  91       - sdk/cli/reference.html.textile.liquid
  92       - sdk/cli/subcommands.html.textile.liquid
  93     - Go:
  94       - sdk/go/index.html.textile.liquid
  95       - sdk/go/example.html.textile.liquid
  96     - Perl:
  97       - sdk/perl/index.html.textile.liquid
  98       - sdk/perl/example.html.textile.liquid
  99     - Ruby:
 100       - sdk/ruby/index.html.textile.liquid
 101       - sdk/ruby/example.html.textile.liquid
 102     - Java:
 103       - sdk/java/index.html.textile.liquid
 104       - sdk/java/example.html.textile.liquid
 105   api:
 106     - Concepts:
 107       - api/index.html.textile.liquid
 108       - api/tokens.html.textile.liquid
 109       - api/requests.html.textile.liquid
 110       - api/methods.html.textile.liquid
 111       - api/resources.html.textile.liquid
 112       - api/permission-model.html.textile.liquid
 113       - api/storage.html.textile.liquid
 114       - api/execution.html.textile.liquid
 115     - Permission and authentication:
 116       - api/methods/api_client_authorizations.html.textile.liquid
 117       - api/methods/api_clients.html.textile.liquid
 118       - api/methods/authorized_keys.html.textile.liquid
 119       - api/methods/groups.html.textile.liquid
 120       - api/methods/users.html.textile.liquid
 121     - System resources:
 122       - api/methods/keep_services.html.textile.liquid
 123       - api/methods/links.html.textile.liquid
 124       - api/methods/logs.html.textile.liquid
 125       - api/methods/nodes.html.textile.liquid
 126       - api/methods/virtual_machines.html.textile.liquid
 127       - api/methods/keep_disks.html.textile.liquid
 128     - Data management:
 129       - api/methods/collections.html.textile.liquid
 130       - api/methods/repositories.html.textile.liquid
 131     - Container engine:
 132       - api/methods/container_requests.html.textile.liquid
 133       - api/methods/containers.html.textile.liquid
 134       - api/methods/workflows.html.textile.liquid
 135     - Jobs engine (deprecated):
 136       - api/crunch-scripts.html.textile.liquid
 137       - api/methods/jobs.html.textile.liquid
 138       - api/methods/job_tasks.html.textile.liquid
 139       - api/methods/pipeline_instances.html.textile.liquid
 140       - api/methods/pipeline_templates.html.textile.liquid
 141     - Metadata for bioinformatics:
 142       - api/methods/humans.html.textile.liquid
 143       - api/methods/specimens.html.textile.liquid
 144       - api/methods/traits.html.textile.liquid
 145   installguide:
 146     - Overview:
 147       - install/index.html.textile.liquid
 148     - Docker quick start:
 149       - install/arvbox.html.textile.liquid
 150     - Manual installation:
 151       - install/install-manual-prerequisites.html.textile.liquid
 152       - install/install-postgresql.html.textile.liquid
 153       - install/install-sso.html.textile.liquid
 154       - install/install-api-server.html.textile.liquid
 155       - install/install-ws.html.textile.liquid
 156       - install/install-arv-git-httpd.html.textile.liquid
 157       - install/install-workbench-app.html.textile.liquid
 158       - install/install-shell-server.html.textile.liquid
 159       - install/create-standard-objects.html.textile.liquid
 160       - install/install-keepstore.html.textile.liquid
 161       - install/configure-azure-blob-storage.html.textile.liquid
 162       - install/install-keepproxy.html.textile.liquid
 163       - install/install-keep-web.html.textile.liquid
 164       - install/install-keep-balance.html.textile.liquid
 165     - Containers API support on SLURM:
 166       - install/crunch2-slurm/install-prerequisites.html.textile.liquid
 167       - install/crunch2-slurm/install-slurm.html.textile.liquid
 168       - install/crunch2-slurm/install-compute-node.html.textile.liquid
 169       - install/crunch2-slurm/install-dispatch.html.textile.liquid
 170       - install/crunch2-slurm/install-test.html.textile.liquid
 171       - install/install-nodemanager.html.textile.liquid
 172       - install/install-compute-ping.html.textile.liquid
 173     - Jobs API support (deprecated):
 174       - install/install-crunch-dispatch.html.textile.liquid
 175       - install/install-compute-node.html.textile.liquid
 176     - Helpful hints:
 177       - install/copy_pipeline_from_curoverse.html.textile.liquid
 178       - install/cheat_sheet.html.textile.liquid
 179     - Migrating from Docker 1.9:
 180       - install/migrate-docker19.html.textile.liquid