2 # Copyright (C) The Arvados Authors. All rights reserved.
4 # SPDX-License-Identifier: AGPL-3.0
7 . `dirname "$(readlink -f "$0")"`/run-library.sh
9 read -rd "\000" helpmessage <<EOF
10 $(basename $0): Install and test Arvados components.
12 Exit non-zero if any tests fail.
15 $(basename $0) WORKSPACE=/path/to/arvados [options]
19 --skip FOO Do not test the FOO component.
20 --skip sanity Skip initial dev environment sanity checks.
21 --skip install Do not run any install steps. Just run tests.
22 You should provide GOPATH, GEMHOME, and VENVDIR options
23 from a previous invocation if you use this option.
24 --only FOO Do not test anything except the FOO component.
25 --temp DIR Install components and dependencies under DIR instead of
26 making a new temporary directory. Implies --leave-temp.
27 --leave-temp Do not remove GOPATH, virtualenv, and other temp dirs at exit.
28 Instead, show the path to give as --temp to reuse them in
29 subsequent invocations.
30 --repeat N Repeat each install/test step until it succeeds N times.
31 --retry Prompt to retry if an install or test suite fails.
32 --only-install Run specific install step
33 --short Skip (or scale down) some slow tests.
34 --interactive Set up, then prompt for test/install steps to perform.
35 WORKSPACE=path Arvados source tree to test.
36 CONFIGSRC=path Dir with config.yml file containing PostgreSQL section for use by tests.
37 services/api_test="TEST=test/functional/arvados/v1/collections_controller_test.rb"
38 Restrict apiserver tests to the given file
39 sdk/python_test="--test-suite tests.test_keep_locator"
40 Restrict Python SDK tests to the given class
41 apps/workbench_test="TEST=test/integration/pipeline_instances_test.rb"
42 Restrict Workbench tests to the given file
43 services/arv-git-httpd_test="-check.vv"
44 Show all log messages, even when tests pass (also works
45 with services/keepstore_test etc.)
47 Print more debug messages
48 envvar=value Set \$envvar to value. Primarily useful for WORKSPACE,
49 *_test, and other examples shown above.
51 Assuming "--skip install" is not given, all components are installed
52 into \$GOPATH, \$VENDIR, and \$GEMHOME before running any tests. Many
53 test suites depend on other components being installed, and installing
54 everything tends to be quicker than debugging dependencies.
56 As a special concession to the current CI server config, CONFIGSRC
57 defaults to $HOME/arvados-api-server if that directory exists.
59 More information and background:
61 https://arvados.org/projects/arvados/wiki/Running_tests
66 apps/workbench_units (*)
67 apps/workbench_functionals (*)
68 apps/workbench_integration (*)
69 apps/workbench_benchmark
70 apps/workbench_profile
77 lib/controller/federation
78 lib/controller/railsproxy
87 lib/dispatchcloud/container
88 lib/dispatchcloud/scheduler
89 lib/dispatchcloud/sshexecutor
90 lib/dispatchcloud/worker
95 services/arv-git-httpd
97 services/dockercleaner
104 services/keep-balance
106 services/crunch-dispatch-local
107 services/crunch-dispatch-slurm
129 tools/crunchstat-summary
130 tools/crunchstat-summary:py3
133 tools/keep-block-check
135 (*) apps/workbench is shorthand for apps/workbench_units +
136 apps/workbench_functionals + apps/workbench_integration
140 # First make sure to remove any ARVADOS_ variables from the calling
141 # environment that could interfere with the tests.
142 unset $(env | cut -d= -f1 | grep \^ARVADOS_)
144 # Reset other variables that could affect our [tests'] behavior by
154 export LANG=en_US.UTF-8
162 if [[ -z "$temp" ]]; then
163 # we did not even get as far as making a temp dir
165 elif [[ -z "$temp_preserve" ]]; then
166 # Go creates readonly dirs in the module cache, which cause
167 # "rm -rf" to fail unless we chmod first.
171 echo "Leaving behind temp dirs in $temp"
177 echo >&2 "Fatal: $* (encountered in ${FUNCNAME[1]} at ${BASH_SOURCE[1]} line ${BASH_LINENO[0]})"
183 if which create-plot-data-from-log.sh >/dev/null; then
184 create-plot-data-from-log.sh $BUILD_NUMBER "$WORKSPACE/apps/workbench/log/test.log" "$WORKSPACE/apps/workbench/log/"
186 rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
188 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
195 [[ -n "${skip[sanity]}" ]] && return 0
196 ( [[ -n "$WORKSPACE" ]] && [[ -d "$WORKSPACE/services" ]] ) \
197 || fatal "WORKSPACE environment variable not set to a source directory (see: $0 --help)"
198 [[ -z "$CONFIGSRC" ]] || [[ -s "$CONFIGSRC/config.yml" ]] \
199 || fatal "CONFIGSRC is $CONFIGSRC but '$CONFIGSRC/config.yml' is empty or not found (see: $0 --help)"
200 echo Checking dependencies:
201 echo "locale: ${LANG}"
202 [[ "$(locale charmap)" = "UTF-8" ]] \
203 || fatal "Locale '${LANG}' is broken/missing. Try: echo ${LANG} | sudo tee -a /etc/locale.gen && sudo locale-gen"
206 || fatal "No ruby. Install >=2.1.9 (using rbenv, rvm, or source)"
209 || fatal "No go binary. See http://golang.org/doc/install"
210 [[ $(go version) =~ go1.([0-9]+) ]] && [[ ${BASH_REMATCH[1]} -ge 12 ]] \
211 || fatal "Go >= 1.12 required. See http://golang.org/doc/install"
213 gcc --version | egrep ^gcc \
214 || fatal "No gcc. Try: apt-get install build-essential"
216 find /usr/include -path '*fuse/fuse.h' | egrep --max-count=1 . \
217 || fatal "No fuse/fuse.h. Try: apt-get install libfuse-dev"
219 find /usr/include -path '*gnutls/gnutls.h' | egrep --max-count=1 . \
220 || fatal "No gnutls/gnutls.h. Try: apt-get install libgnutls28-dev"
221 echo -n 'virtualenv: '
222 python3 -m venv -h | egrep --max-count=1 . \
223 || fatal "No virtualenv. Try: apt-get install python3-venv"
224 echo -n 'Python3 pyconfig.h: '
225 find /usr/include -path '*/python3*/pyconfig.h' | egrep --max-count=1 . \
226 || fatal "No Python3 pyconfig.h. Try: apt-get install python3-dev"
228 || fatal "No netstat. Try: apt-get install net-tools"
230 PATH="$PATH:/sbin:/usr/sbin:/usr/local/sbin" nginx -v \
231 || fatal "No nginx. Try: apt-get install nginx"
233 perl -v | grep version \
234 || fatal "No perl. Try: apt-get install perl"
235 for mod in ExtUtils::MakeMaker JSON LWP Net::SSL; do
236 echo -n "perl $mod: "
237 perl -e "use $mod; print \"\$$mod::VERSION\\n\"" \
238 || fatal "No $mod. Try: apt-get install perl-modules libcrypt-ssleay-perl libjson-perl libwww-perl"
242 || fatal "No gitolite. Try: apt-get install gitolite3"
245 || fatal "No npm. Try: wget -O- https://nodejs.org/dist/v10.23.1/node-v10.23.1-linux-x64.tar.xz | sudo tar -C /usr/local -xJf - && sudo ln -s ../node-v10.23.1-linux-x64/bin/{node,npm} /usr/local/bin/"
247 cadaver --version | grep -w cadaver \
248 || fatal "No cadaver. Try: apt-get install cadaver"
249 echo -n 'libattr1 xattr.h: '
250 find /usr/include -path '*/attr/xattr.h' | egrep --max-count=1 . \
251 || fatal "No libattr1 xattr.h. Try: apt-get install libattr1-dev"
252 echo -n 'libcurl curl.h: '
253 find /usr/include -path '*/curl/curl.h' | egrep --max-count=1 . \
254 || fatal "No libcurl curl.h. Try: apt-get install libcurl4-gnutls-dev"
255 echo -n 'libpq libpq-fe.h: '
256 find /usr/include -path '*/postgresql/libpq-fe.h' | egrep --max-count=1 . \
257 || fatal "No libpq libpq-fe.h. Try: apt-get install libpq-dev"
258 echo -n 'libpam pam_appl.h: '
259 find /usr/include -path '*/security/pam_appl.h' | egrep --max-count=1 . \
260 || fatal "No libpam pam_appl.h. Try: apt-get install libpam0g-dev"
261 echo -n 'postgresql: '
262 psql --version || fatal "No postgresql. Try: apt-get install postgresql postgresql-client-common"
263 echo -n 'phantomjs: '
264 phantomjs --version || fatal "No phantomjs. Try: apt-get install phantomjs"
266 which Xvfb || fatal "No xvfb. Try: apt-get install xvfb"
268 dot -V || fatal "No graphviz. Try: apt-get install graphviz"
269 echo -n 'geckodriver: '
270 geckodriver --version | grep ^geckodriver || echo "No geckodriver. Try: arvados-server install"
271 echo -n 'singularity: '
272 singularity --version || fatal "No singularity. Try: arvados-server install"
273 echo -n 'docker client: '
274 docker --version || echo "No docker client. Try: arvados-server install"
275 echo -n 'docker server: '
276 docker info --format='{{.ServerVersion}}' || echo "No docker server. Try: arvados-server install"
278 if [[ "$NEED_SDK_R" = true ]]; then
281 which Rscript || fatal "No Rscript. Try: apt-get install r-base"
283 Rscript -e "library('testthat')" || fatal "No testthat. Try: apt-get install r-cran-testthat"
284 # needed for roxygen2, needed for devtools, needed for R sdk
285 pkg-config --exists libxml-2.0 || fatal "No libxml2. Try: apt-get install libxml2-dev"
286 # needed for pkgdown, builds R SDK doc pages
287 which pandoc || fatal "No pandoc. Try: apt-get install pandoc"
289 echo 'procs with /dev/fuse open:'
290 find /proc/*/fd -lname /dev/fuse 2>/dev/null | cut -d/ -f3 | xargs --no-run-if-empty ps -lywww
291 echo 'grep fuse /proc/self/mountinfo:'
292 grep fuse /proc/self/mountinfo
296 # i.e. rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
297 # $BUILD_NUMBER is set by Jenkins if this script is being called as part of a Jenkins run
298 if [[ -f "$1/$2" ]]; then
299 THEDATE=`date +%Y%m%d%H%M%S`
300 mv "$1/$2" "$1/$THEDATE-$BUILD_NUMBER-$2"
301 gzip "$1/$THEDATE-$BUILD_NUMBER-$2"
309 skip[apps/workbench_profile]=1
316 echo >&2 "$helpmessage"
324 only[$1]=1; skip[$1]=""; shift
336 only_install="$1"; shift
346 repeat=$((${1}+0)); shift
352 suite="${arg%%_test=*}"
354 testargs["$suite"]="$args"
357 eval export $(echo $arg | cut -d= -f1)=\"$(echo $arg | cut -d= -f2-)\"
360 echo >&2 "$0: Unrecognized option: '$arg'. Try: $0 --help"
366 # R SDK installation is very slow (~360s in a clean environment) and only
367 # required when testing it. Skip that step if it is not needed.
370 if [[ ${#only[@]} -ne 0 ]] &&
371 [[ -z "${only['sdk/R']}" && -z "${only['doc']}" ]]; then
375 if [[ ${skip["sdk/R"]} == 1 && ${skip["doc"]} == 1 ]]; then
379 if [[ $NEED_SDK_R == false ]]; then
380 echo "R SDK not needed, it will not be installed."
385 pid="$(cat "$WORKSPACE/tmp/${svc}.pid")"
386 if [[ -z "$pid" ]] || ! kill -0 "$pid"; then
387 tail $WORKSPACE/tmp/${1}*.log
388 echo "${svc} pid ${pid} not running"
391 echo "${svc} pid ${pid} ok"
396 base=$("${VENV3DIR}/bin/python3" -c "import yaml; print(list(yaml.safe_load(open('$ARVADOS_CONFIG','r'))['Clusters']['zzzzz']['Services']['$1']['InternalURLs'].keys())[0])")
397 url="$base/_health/ping"
398 if ! curl -Ss -H "Authorization: Bearer e687950a23c3a9bceec28c6223a06c79" "${url}" | tee -a /dev/stderr | grep '"OK"'; then
404 checkdiscoverydoc() {
405 dd="https://${1}/discovery/v1/apis/arvados/v1/rest"
406 if ! (set -o pipefail; curl -fsk "$dd" | grep -q ^{ ); then
407 echo >&2 "ERROR: could not retrieve discovery doc from RailsAPI at $dd"
408 tail -v $WORKSPACE/tmp/railsapi.log
415 if [[ -n "$ARVADOS_TEST_API_HOST" ]]; then
418 . "$VENV3DIR/bin/activate"
419 echo 'Starting API, controller, keepproxy, keep-web, arv-git-httpd, ws, and nginx ssl proxy...'
420 if [[ ! -d "$WORKSPACE/services/api/log" ]]; then
421 mkdir -p "$WORKSPACE/services/api/log"
423 # Remove empty api.pid file if it exists
424 if [[ -f "$WORKSPACE/tmp/api.pid" && ! -s "$WORKSPACE/tmp/api.pid" ]]; then
425 rm -f "$WORKSPACE/tmp/api.pid"
427 all_services_stopped=
431 && eval $(python3 sdk/python/tests/run_test_server.py start --auth admin) \
432 && export ARVADOS_TEST_API_HOST="$ARVADOS_API_HOST" \
433 && export ARVADOS_TEST_API_INSTALLED="$$" \
434 && checkpidfile api \
435 && checkdiscoverydoc $ARVADOS_API_HOST \
436 && eval $(python3 sdk/python/tests/run_test_server.py start_nginx) \
437 && checkpidfile nginx \
438 && python3 sdk/python/tests/run_test_server.py start_controller \
439 && checkpidfile controller \
440 && checkhealth Controller \
441 && checkdiscoverydoc $ARVADOS_API_HOST \
442 && python3 sdk/python/tests/run_test_server.py start_keep_proxy \
443 && checkpidfile keepproxy \
444 && python3 sdk/python/tests/run_test_server.py start_keep-web \
445 && checkpidfile keep-web \
446 && checkhealth WebDAV \
447 && python3 sdk/python/tests/run_test_server.py start_arv-git-httpd \
448 && checkpidfile arv-git-httpd \
449 && checkhealth GitHTTP \
450 && python3 sdk/python/tests/run_test_server.py start_ws \
452 && export ARVADOS_TEST_PROXY_SERVICES=1 \
453 && (env | egrep ^ARVADOS) \
456 if [[ $fail != 0 ]]; then
457 unset ARVADOS_TEST_API_HOST
463 if [[ -n "$all_services_stopped" ]]; then
466 unset ARVADOS_TEST_API_HOST ARVADOS_TEST_PROXY_SERVICES
467 . "$VENV3DIR/bin/activate" || return
469 && python3 sdk/python/tests/run_test_server.py stop_nginx \
470 && python3 sdk/python/tests/run_test_server.py stop_arv-git-httpd \
471 && python3 sdk/python/tests/run_test_server.py stop_ws \
472 && python3 sdk/python/tests/run_test_server.py stop_keep-web \
473 && python3 sdk/python/tests/run_test_server.py stop_keep_proxy \
474 && python3 sdk/python/tests/run_test_server.py stop_controller \
475 && python3 sdk/python/tests/run_test_server.py stop \
476 && all_services_stopped=1
482 failures+=("($(basename $0) interrupted)")
487 setup_ruby_environment() {
488 if [[ -s "$HOME/.rvm/scripts/rvm" ]] ; then
489 source "$HOME/.rvm/scripts/rvm"
491 elif [[ -s "/usr/local/rvm/scripts/rvm" ]] ; then
492 source "/usr/local/rvm/scripts/rvm"
498 if [[ "$using_rvm" == true ]]; then
499 # If rvm is in use, we can't just put separate "dependencies"
500 # and "gems-under-test" paths to GEM_PATH: passenger resets
501 # the environment to the "current gemset", which would lose
502 # our GEM_PATH and prevent our test suites from running ruby
503 # programs (for example, the Workbench test suite could not
504 # boot an API server or run arv). Instead, we have to make an
505 # rvm gemset and use it for everything.
507 [[ `type rvm | head -n1` == "rvm is a function" ]] \
510 # Put rvm's favorite path back in first place (overriding
511 # virtualenv, which just put itself there). Ignore rvm's
512 # complaint about not being in first place already.
513 rvm use @default 2>/dev/null
515 # Create (if needed) and switch to an @arvados-tests-* gemset,
516 # salting the gemset name so it doesn't interfere with
517 # concurrent builds in other workspaces. Leave the choice of
518 # ruby to the caller.
519 gemset="arvados-tests-$(echo -n "${WORKSPACE}" | md5sum | head -c16)"
520 rvm use "@${gemset}" --create \
521 || fatal 'rvm gemset setup'
524 (bundle version | grep -q 2.2.19) || gem install --no-document bundler -v 2.2.19
525 bundle="$(which bundle)"
527 "$bundle" version | grep 2.2.19 || fatal 'install bundler'
529 # When our "bundle install"s need to install new gems to
530 # satisfy dependencies, we want them to go where "gem install
531 # --user-install" would put them. (However, if the caller has
532 # already set GEM_HOME, we assume that's where dependencies
533 # should be installed, and we should leave it alone.)
535 if [ -z "$GEM_HOME" ]; then
536 user_gempath="$(gem env gempath)"
537 export GEM_HOME="${user_gempath%%:*}"
539 PATH="$(gem env gemdir)/bin:$PATH"
541 # When we build and install our own gems, we install them in our
542 # $GEMHOME tmpdir, and we want them to be at the front of GEM_PATH and
543 # PATH so integration tests prefer them over other versions that
544 # happen to be installed in $user_gempath, system dirs, etc.
546 tmpdir_gem_home="$(env - PATH="$PATH" HOME="$GEMHOME" gem env gempath | cut -f1 -d:)"
547 PATH="$tmpdir_gem_home/bin:$PATH"
548 export GEM_PATH="$tmpdir_gem_home:$(gem env gempath)"
550 echo "Will install dependencies to $(gem env gemdir)"
551 echo "Will install bundler and arvados gems to $tmpdir_gem_home"
552 echo "Gem search path is GEM_PATH=$GEM_PATH"
557 for v in ${versions[@]}; do
558 if ! gem list --installed --version "${v}" bundler >/dev/null; then
559 gem install --no-document --user $(for v in ${versions[@]}; do echo bundler:${v}; done)
563 "$bundle" version | tee /dev/stderr | grep -q 'version 2'
564 ) || fatal 'install bundler'
565 if test -d /var/lib/arvados-arvbox/ ; then
566 # Inside arvbox, use bundler-installed binstubs. The
567 # system bundler and rail's own bin/bundle refuse to work.
569 bundle=binstubs/bundle
575 if [[ "$using_rvm" == true ]]; then
578 GEM_HOME="$tmpdir_gem_home" GEM_PATH="$tmpdir_gem_home" "$@"
582 gem_uninstall_if_exists() {
583 if gem list "$1\$" | egrep '^\w'; then
584 gem uninstall --force --all --executables "$1"
589 local venvdest="$1"; shift
590 if ! [[ -e "$venvdest/bin/activate" ]] || ! [[ -e "$venvdest/bin/pip3" ]]; then
591 python3 -m venv "$@" "$venvdest" || fatal "virtualenv $venvdest failed"
592 elif [[ -n "$short" ]]; then
595 "$venvdest/bin/pip3" install --no-cache-dir 'setuptools>=18.5' 'pip>=7'
599 # If dependencies like ruby, go, etc. are installed in
600 # /var/lib/arvados -- presumably by "arvados-server install" --
601 # then we want to use those versions, instead of whatever happens
602 # to be installed in /usr.
603 PATH="/var/lib/arvados/bin:${PATH}"
606 echo "WORKSPACE=$WORKSPACE"
608 # Clean up .pyc files that may exist in the workspace
610 find -name '*.pyc' -delete
612 if [[ -z "$temp" ]]; then
616 # Set up temporary install dirs (unless existing dirs were supplied)
617 for tmpdir in VENV3DIR GOPATH GEMHOME PERLINSTALLBASE R_LIBS
619 if [[ -z "${!tmpdir}" ]]; then
620 eval "$tmpdir"="$temp/$tmpdir"
622 if ! [[ -d "${!tmpdir}" ]]; then
623 mkdir "${!tmpdir}" || fatal "can't create ${!tmpdir} (does $temp exist?)"
627 rm -vf "${WORKSPACE}/tmp/*.log"
629 export PERLINSTALLBASE
630 export PERL5LIB="$PERLINSTALLBASE/lib/perl5${PERL5LIB:+:$PERL5LIB}"
635 # Make sure our compiled binaries under test override anything
636 # else that might be in the environment.
637 export PATH=$GOPATH/bin:$PATH
639 # Jenkins config requires that glob tmp/*.log match something. Ensure
640 # that happens even if we don't end up running services that set up
642 mkdir -p "${WORKSPACE}/tmp/" || fatal "could not mkdir ${WORKSPACE}/tmp"
643 touch "${WORKSPACE}/tmp/controller.log" || fatal "could not touch ${WORKSPACE}/tmp/controller.log"
645 unset http_proxy https_proxy no_proxy
647 # Note: this must be the last time we change PATH, otherwise rvm will
649 setup_ruby_environment
655 go mod download || fatal "Go deps failed"
656 which goimports >/dev/null || go install golang.org/x/tools/cmd/goimports@latest || fatal "Go setup failed"
658 setup_virtualenv "$VENV3DIR"
659 . "$VENV3DIR/bin/activate"
661 # Needed for run_test_server.py which is used by certain (non-Python) tests.
662 # pdoc3 needed to generate the Python SDK documentation.
665 "${VENV3DIR}/bin/pip3" install wheel
666 "${VENV3DIR}/bin/pip3" install PyYAML
667 "${VENV3DIR}/bin/pip3" install httplib2
668 "${VENV3DIR}/bin/pip3" install future
669 "${VENV3DIR}/bin/pip3" install google-api-python-client
670 "${VENV3DIR}/bin/pip3" install ciso8601
671 "${VENV3DIR}/bin/pip3" install pycurl
672 "${VENV3DIR}/bin/pip3" install ws4py
673 "${VENV3DIR}/bin/pip3" install pdoc3
674 cd "$WORKSPACE/sdk/python"
675 python3 setup.py install
676 ) || fatal "installing PyYAML and sdk/python failed"
684 if [[ "$remain" -gt 1 ]]; then
685 remain=$((${remain}-1))
686 title "(repeating ${remain} more times)"
690 elif [[ "$retry" == 1 ]]; then
691 read -p 'Try again? [Y/n] ' x
692 if [[ "$x" != "y" ]] && [[ "$x" != "" ]]
704 apps/workbench_units | apps/workbench_functionals | apps/workbench_integration)
711 if [[ -n "${skip[$suite]}" || \
712 -n "${skip[$1]}" || \
713 (${#only[@]} -ne 0 && ${only[$suite]} -eq 0 && ${only[$1]} -eq 0) ]]; then
719 check_arvados_config "$1"
721 gofmt | doc | lib/cli | lib/cloud/azure | lib/cloud/ec2 | lib/cloud/cloudtest | lib/cmd | lib/dispatchcloud/sshexecutor | lib/dispatchcloud/worker)
722 check_arvados_config "$1"
723 # don't care whether services are running
726 check_arvados_config "$1"
727 if ! start_services; then
728 checkexit 1 "$1 tests"
729 title "test $1 -- failed to start services"
734 retry do_test_once ${@}
738 version=${ARVADOS_VERSION:-$(git log -n1 --format=%H)-dev}
739 echo "-X git.arvados.org/arvados.git/lib/cmd.version=${version} -X main.version=${version}"
749 if which deactivate >/dev/null; then deactivate; fi
750 if ! . "$VENV3DIR/bin/activate"
753 elif [[ "$2" == "go" ]]
755 covername="coverage-$(echo "$1" | sed -e 's/\//_/g')"
756 coverflags=("-covermode=count" "-coverprofile=$WORKSPACE/tmp/.$covername.tmp")
757 # We do "go install" here to catch compilation errors
758 # before trying "go test". Otherwise, coverage-reporting
759 # mode makes Go show the wrong line numbers when reporting
760 # compilation errors.
761 go install -ldflags "$(go_ldflags)" "$WORKSPACE/$1" && \
762 cd "$WORKSPACE/$1" && \
763 if [[ -n "${testargs[$1]}" ]]
765 # "go test -check.vv giturl" doesn't work, but this
767 go test ${short:+-short} ${testargs[$1]}
769 # The above form gets verbose even when testargs is
770 # empty, so use this form in such cases:
771 go test ${short:+-short} ${coverflags[@]} "git.arvados.org/arvados.git/$1"
774 if [[ -f "$WORKSPACE/tmp/.$covername.tmp" ]]
776 go tool cover -html="$WORKSPACE/tmp/.$covername.tmp" -o "$WORKSPACE/tmp/$covername.html"
777 rm "$WORKSPACE/tmp/.$covername.tmp"
779 [[ $result = 0 ]] && gofmt -e -d *.go
780 elif [[ "$2" == "pip" ]]
783 cd "$WORKSPACE/$1" && while :
785 tries=$((${tries}+1))
786 # $3 can name a path directory for us to use, including trailing
787 # slash; e.g., the bin/ subdirectory of a virtualenv.
788 if [[ -e "${3}activate" ]]; then
791 python setup.py ${short:+--short-tests-only} test ${testargs[$1]}
793 if [[ ${tries} < 3 && ${result} == 137 ]]
795 printf '\n*****\n%s tests killed -- retrying\n*****\n\n' "$1"
801 elif [[ "$2" != "" ]]
808 checkexit $result "$1 tests"
809 title "test $1 -- `timer`"
813 check_arvados_config() {
814 if [[ "$1" = "env" ]] ; then
817 if [[ -z "$ARVADOS_CONFIG" ]] ; then
818 # Create config file. The run_test_server script requires PyYAML,
819 # so virtualenv needs to be active. Downstream steps like
820 # workbench install which require a valid config.yml.
821 if [[ ! -s "$VENV3DIR/bin/activate" ]] ; then
824 . "$VENV3DIR/bin/activate"
826 eval $(python3 sdk/python/tests/run_test_server.py setup_config)
832 if [[ -n "${skip[install]}" || ( -n "${only_install}" && "${only_install}" != "${1}" && "${only_install}" != "${2}" ) ]]; then
835 check_arvados_config "$1"
836 retry do_install_once ${@}
844 if which deactivate >/dev/null; then deactivate; fi
845 if [[ "$1" != "env" ]] && ! . "$VENV3DIR/bin/activate"; then
847 elif [[ "$2" == "go" ]]
849 go install -ldflags "$(go_ldflags)" "$WORKSPACE/$1"
850 elif [[ "$2" == "pip" ]]
852 # $3 can name a path directory for us to use, including trailing
853 # slash; e.g., the bin/ subdirectory of a virtualenv.
855 # Need to change to a different directory after creating
856 # the source dist package to avoid a pip bug.
857 # see https://arvados.org/issues/5766 for details.
859 # Also need to install twice, because if it believes the package is
860 # already installed, pip it won't install it. So the first "pip
861 # install" ensures that the dependencies are met, the second "pip
862 # install" ensures that we've actually installed the local package
865 && "${3}python3" setup.py sdist rotate --keep=1 --match .tar.gz \
867 && "${3}pip3" install --no-cache-dir "$WORKSPACE/$1/dist"/*.tar.gz \
868 && "${3}pip3" install --no-cache-dir --no-deps --ignore-installed "$WORKSPACE/$1/dist"/*.tar.gz
869 elif [[ "$2" != "" ]]
876 checkexit $result "$1 install"
877 title "install $1 -- `timer`"
881 bundle_install_trylocal() {
884 echo "(Running bundle install --local. 'could not find package' messages are OK.)"
885 if ! "$bundle" install --local --no-deployment; then
886 echo "(Running bundle install again, without --local.)"
887 "$bundle" install --no-deployment
894 cd "$WORKSPACE/doc" \
895 && bundle_install_trylocal \
902 with_test_gemset gem_uninstall_if_exists "$gemname" \
903 && cd "$WORKSPACE/$srcpath" \
904 && bundle_install_trylocal \
905 && gem build "$gemname.gemspec" \
906 && with_test_gemset gem install --no-document $(ls -t "$gemname"-*.gem|head -n1)
910 install_gem arvados sdk/ruby
914 if [[ "$NEED_SDK_R" = true ]]; then
915 cd "$WORKSPACE/sdk/R" \
916 && Rscript --vanilla install_deps.R
921 cd "$WORKSPACE/sdk/perl" \
922 && perl Makefile.PL INSTALL_BASE="$PERLINSTALLBASE" \
923 && make install INSTALLDIRS=perl
927 install_gem arvados-cli sdk/cli
930 install_services/login-sync() {
931 install_gem arvados-login-sync services/login-sync
934 install_services/api() {
936 check_arvados_config "services/api"
937 cd "$WORKSPACE/services/api" \
938 && RAILS_ENV=test bundle_install_trylocal \
941 rm -f config/environments/test.rb
942 cp config/environments/test.rb.example config/environments/test.rb
944 # Clear out any lingering postgresql connections to the test
945 # database, so that we can drop it. This assumes the current user
946 # is a postgresql superuser.
947 cd "$WORKSPACE/services/api" \
948 && test_database=$("${VENV3DIR}/bin/python3" -c "import yaml; print(yaml.safe_load(open('$ARVADOS_CONFIG','r'))['Clusters']['zzzzz']['PostgreSQL']['Connection']['dbname'])") \
949 && psql "$test_database" -c "SELECT pg_terminate_backend (pg_stat_activity.pid::int) FROM pg_stat_activity WHERE pg_stat_activity.datname = '$test_database';" 2>/dev/null
951 mkdir -p "$WORKSPACE/services/api/tmp/pids"
953 cert="$WORKSPACE/services/api/tmp/self-signed"
954 if [[ ! -e "$cert.pem" || "$(date -r "$cert.pem" +%s)" -lt 1512659226 ]]; then
956 dir="$WORKSPACE/services/api/tmp"
958 openssl req -newkey rsa:2048 -nodes -subj '/C=US/ST=State/L=City/CN=localhost' -out "$cert.csr" -keyout "$cert.key" </dev/null
959 openssl x509 -req -in "$cert.csr" -signkey "$cert.key" -out "$cert.pem" -days 3650 -extfile <(printf 'subjectAltName=DNS:localhost,DNS:::1,DNS:0.0.0.0,DNS:127.0.0.1,IP:::1,IP:0.0.0.0,IP:127.0.0.1')
963 cd "$WORKSPACE/services/api" \
965 && mkdir -p tmp/git \
967 && tar xf ../../test/test.git.tar \
968 && mkdir -p internal.git \
969 && git --git-dir internal.git init \
974 cd "$WORKSPACE/services/api"
975 export RAILS_ENV=test
976 if bin/rails db:environment:set ; then
980 bin/rake db:fixtures:load
984 declare -a pythonstuff
988 services/dockercleaner:py3
990 tools/crunchstat-summary:py3
994 gostuff=($(cd "$WORKSPACE" && git grep -lw func | grep \\.go | sed -e 's/\/[^\/]*$//' | sort -u))
996 install_apps/workbench() {
997 cd "$WORKSPACE/apps/workbench" \
998 && mkdir -p tmp/cache \
999 && RAILS_ENV=test bundle_install_trylocal \
1000 && RAILS_ENV=test RAILS_GROUPS=assets "$bundle" exec rake npm:install
1007 ARVADOS_API_HOST=pirca.arvadosapi.com
1008 # Make sure python-epydoc is installed or the next line won't
1010 PYTHONPATH=$WORKSPACE/sdk/python/ "$bundle" exec rake linkchecker baseurl=file://$WORKSPACE/doc/.site/ arvados_workbench_host=https://workbench.$ARVADOS_API_HOST arvados_api_host=$ARVADOS_API_HOST
1015 cd "$WORKSPACE" || return 1
1016 dirs=$(ls -d */ | egrep -v 'vendor|tmp')
1017 [[ -z "$(gofmt -e -d $dirs | tee -a /dev/stderr)" ]]
1020 test_services/api() {
1021 rm -f "$WORKSPACE/services/api/git-commit.version"
1022 cd "$WORKSPACE/services/api" \
1023 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake test TESTOPTS=\'-v -d\' ${testargs[services/api]}
1027 cd "$WORKSPACE/sdk/ruby" \
1028 && "$bundle" exec rake test TESTOPTS=-v ${testargs[sdk/ruby]}
1032 if [[ "$NEED_SDK_R" = true ]]; then
1033 cd "$WORKSPACE/sdk/R" \
1034 && Rscript --vanilla run_test.R
1039 cd "$WORKSPACE/sdk/cli" \
1040 && mkdir -p /tmp/keep \
1041 && KEEP_LOCAL_STORE=/tmp/keep "$bundle" exec rake test TESTOPTS=-v ${testargs[sdk/cli]}
1044 test_sdk/java-v2() {
1045 cd "$WORKSPACE/sdk/java-v2" && gradle test ${testargs[sdk/java-v2]}
1048 test_services/login-sync() {
1049 cd "$WORKSPACE/services/login-sync" \
1050 && "$bundle" exec rake test TESTOPTS=-v ${testargs[services/login-sync]}
1053 test_apps/workbench_units() {
1054 local TASK="test:units"
1055 cd "$WORKSPACE/apps/workbench" \
1056 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_units]}
1059 test_apps/workbench_functionals() {
1060 local TASK="test:functionals"
1061 cd "$WORKSPACE/apps/workbench" \
1062 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_functionals]}
1065 test_apps/workbench_integration() {
1066 local TASK="test:integration"
1067 cd "$WORKSPACE/apps/workbench" \
1068 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_integration]}
1071 test_apps/workbench_benchmark() {
1072 local TASK="test:benchmark"
1073 cd "$WORKSPACE/apps/workbench" \
1074 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} ${testargs[apps/workbench_benchmark]}
1077 test_apps/workbench_profile() {
1078 local TASK="test:profile"
1079 cd "$WORKSPACE/apps/workbench" \
1080 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} ${testargs[apps/workbench_profile]}
1084 # Install parts needed by test suites
1086 do_install cmd/arvados-server go
1089 do_install sdk/python pip "${VENV3DIR}/bin/"
1091 do_install services/api
1092 do_install services/arv-git-httpd go
1093 do_install services/keepproxy go
1094 do_install services/keep-web go
1104 do_install services/login-sync
1105 for p in "${pythonstuff[@]}"
1108 if [[ -z ${skip[python3]} ]]; then
1109 do_install ${dir} pip "$VENV3DIR/bin/"
1112 for g in "${gostuff[@]}"
1116 do_install services/api
1117 do_install apps/workbench
1122 do_test services/api
1124 # Shortcut for when we're only running apiserver tests. This saves a bit of time,
1125 # because we don't need to start up the api server for subsequent tests.
1126 if [ ! -z "$only" ] && [ "$only" == "services/api" ]; then
1127 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
1136 do_test services/login-sync
1138 for p in "${pythonstuff[@]}"
1141 if [[ -z ${skip[python3]} ]]; then
1142 do_test ${dir} pip "$VENV3DIR/bin/"
1146 for g in "${gostuff[@]}"
1150 do_test apps/workbench_units
1151 do_test apps/workbench_functionals
1152 do_test apps/workbench_integration
1153 do_test apps/workbench_benchmark
1154 do_test apps/workbench_profile
1159 for g in "${gostuff[@]}"
1165 help_interactive() {
1166 echo "== Interactive commands:"
1167 echo "TARGET (short for 'test DIR')"
1169 echo "10 test TARGET (run test 10 times)"
1170 echo "test TARGET:py3 (test with python3)"
1171 echo "test TARGET -check.vv (pass arguments to test)"
1172 echo "install TARGET"
1173 echo "install env (go/python libs)"
1174 echo "install deps (go/python libs + arvados components needed for integration tests)"
1175 echo "reset (...services used by integration tests)"
1177 echo "== Test targets:"
1178 echo "${!testfuncargs[@]}" | tr ' ' '\n' | sort | column
1183 declare -A testfuncargs=()
1184 for g in "${gostuff[@]}"; do
1185 testfuncargs[$g]="$g go"
1187 for p in "${pythonstuff[@]}"; do
1189 testfuncargs[$dir:py3]="$dir pip $VENV3DIR/bin/"
1192 testfuncargs["sdk/cli"]="sdk/cli"
1193 testfuncargs["sdk/R"]="sdk/R"
1194 testfuncargs["sdk/java-v2"]="sdk/java-v2"
1195 testfuncargs["apps/workbench_units"]="apps/workbench_units"
1196 testfuncargs["apps/workbench_functionals"]="apps/workbench_functionals"
1197 testfuncargs["apps/workbench_integration"]="apps/workbench_integration"
1198 testfuncargs["apps/workbench_benchmark"]="apps/workbench_benchmark"
1199 testfuncargs["apps/workbench_profile"]="apps/workbench_profile"
1201 if [[ -z ${interactive} ]]; then
1208 if [[ -e "$VENV3DIR/bin/activate" ]]; then stop_services; fi
1210 if [[ "$TERM" = dumb ]]; then
1211 # assume emacs, or something, is offering a history buffer
1212 # and pre-populating the command will only cause trouble
1214 elif [[ ! -e "$VENV3DIR/bin/activate" ]]; then
1215 nextcmd="install deps"
1222 nextcmd="install deps"
1224 HISTFILE="$WORKSPACE/tmp/.history"
1226 while read -p 'What next? ' -e -i "$nextcmd" nextcmd; do
1227 history -s "$nextcmd"
1230 if [[ "${nextcmd}" =~ ^[0-9] ]]; then
1231 read count nextcmd <<<"${nextcmd}"
1233 read verb target opts <<<"${nextcmd}"
1234 target="${target%/}"
1235 target="${target/\/:/:}"
1252 argstarget=${target%:py3}
1253 testargs["$argstarget"]="${opts}"
1254 tt="${testfuncargs[${target}]}"
1256 while [ $count -gt 0 ]; do
1267 if [[ ${#successes[@]} -gt 0 || ${#failures[@]} -gt 0 ]]; then