2 # Copyright (C) The Arvados Authors. All rights reserved.
4 # SPDX-License-Identifier: AGPL-3.0
6 . `dirname "$(readlink -f "$0")"`/libcloud-pin.sh
9 . `dirname "$(readlink -f "$0")"`/run-library.sh
11 read -rd "\000" helpmessage <<EOF
12 $(basename $0): Install and test Arvados components.
14 Exit non-zero if any tests fail.
17 $(basename $0) WORKSPACE=/path/to/arvados [options]
21 --skip FOO Do not test the FOO component.
22 --skip sanity Skip initial dev environment sanity checks.
23 --skip install Do not run any install steps. Just run tests.
24 You should provide GOPATH, GEMHOME, and VENVDIR options
25 from a previous invocation if you use this option.
26 --only FOO Do not test anything except the FOO component.
27 --temp DIR Install components and dependencies under DIR instead of
28 making a new temporary directory. Implies --leave-temp.
29 --leave-temp Do not remove GOPATH, virtualenv, and other temp dirs at exit.
30 Instead, show the path to give as --temp to reuse them in
31 subsequent invocations.
32 --repeat N Repeat each install/test step until it succeeds N times.
33 --retry Prompt to retry if an install or test suite fails.
34 --only-install Run specific install step
35 --short Skip (or scale down) some slow tests.
36 --interactive Set up, then prompt for test/install steps to perform.
37 WORKSPACE=path Arvados source tree to test.
38 CONFIGSRC=path Dir with api server config files to copy into source tree.
39 (If none given, leave config files alone in source tree.)
40 services/api_test="TEST=test/functional/arvados/v1/collections_controller_test.rb"
41 Restrict apiserver tests to the given file
42 sdk/python_test="--test-suite tests.test_keep_locator"
43 Restrict Python SDK tests to the given class
44 apps/workbench_test="TEST=test/integration/pipeline_instances_test.rb"
45 Restrict Workbench tests to the given file
46 services/arv-git-httpd_test="-check.vv"
47 Show all log messages, even when tests pass (also works
48 with services/keepstore_test etc.)
50 Print more debug messages
51 envvar=value Set \$envvar to value. Primarily useful for WORKSPACE,
52 *_test, and other examples shown above.
54 Assuming "--skip install" is not given, all components are installed
55 into \$GOPATH, \$VENDIR, and \$GEMHOME before running any tests. Many
56 test suites depend on other components being installed, and installing
57 everything tends to be quicker than debugging dependencies.
59 As a special concession to the current CI server config, CONFIGSRC
60 defaults to $HOME/arvados-api-server if that directory exists.
62 More information and background:
64 https://arvados.org/projects/arvados/wiki/Running_tests
69 apps/workbench_units (*)
70 apps/workbench_functionals (*)
71 apps/workbench_integration (*)
72 apps/workbench_benchmark
73 apps/workbench_profile
80 lib/controller/federation
81 lib/controller/railsproxy
89 lib/dispatchcloud/container
90 lib/dispatchcloud/scheduler
91 lib/dispatchcloud/ssh_executor
92 lib/dispatchcloud/worker
95 services/arv-git-httpd
97 services/dockercleaner
103 services/keep-balance
106 services/nodemanager_integration
108 services/crunch-dispatch-local
109 services/crunch-dispatch-slurm
133 tools/crunchstat-summary
134 tools/crunchstat-summary:py3
137 tools/keep-block-check
139 (*) apps/workbench is shorthand for apps/workbench_units +
140 apps/workbench_functionals + apps/workbench_integration
144 # First make sure to remove any ARVADOS_ variables from the calling
145 # environment that could interfere with the tests.
146 unset $(env | cut -d= -f1 | grep \^ARVADOS_)
148 # Reset other variables that could affect our [tests'] behavior by
158 export LANG=en_US.UTF-8
166 if [[ -z "$temp" ]]; then
167 # we didn't even get as far as making a temp dir
169 elif [[ -z "$temp_preserve" ]]; then
172 echo "Leaving behind temp dirs in $temp"
178 echo >&2 "Fatal: $* (encountered in ${FUNCNAME[1]} at ${BASH_SOURCE[1]} line ${BASH_LINENO[0]})"
184 if which create-plot-data-from-log.sh >/dev/null; then
185 create-plot-data-from-log.sh $BUILD_NUMBER "$WORKSPACE/apps/workbench/log/test.log" "$WORKSPACE/apps/workbench/log/"
187 rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
189 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
196 [[ -n "${skip[sanity]}" ]] && return 0
197 ( [[ -n "$WORKSPACE" ]] && [[ -d "$WORKSPACE/services" ]] ) \
198 || fatal "WORKSPACE environment variable not set to a source directory (see: $0 --help)"
199 echo Checking dependencies:
200 echo "locale: ${LANG}"
201 [[ "$(locale charmap)" = "UTF-8" ]] \
202 || fatal "Locale '${LANG}' is broken/missing. Try: echo ${LANG} | sudo tee -a /etc/locale.gen && sudo locale-gen"
203 echo -n 'virtualenv: '
204 virtualenv --version \
205 || fatal "No virtualenv. Try: apt-get install virtualenv (on ubuntu: python-virtualenv)"
208 || fatal "No ruby. Install >=2.1.9 (using rbenv, rvm, or source)"
211 || fatal "No go binary. See http://golang.org/doc/install"
212 [[ $(go version) =~ go1.([0-9]+) ]] && [[ ${BASH_REMATCH[1]} -ge 10 ]] \
213 || fatal "Go >= 1.10 required. See http://golang.org/doc/install"
215 gcc --version | egrep ^gcc \
216 || fatal "No gcc. Try: apt-get install build-essential"
218 find /usr/include -path '*fuse/fuse.h' | egrep --max-count=1 . \
219 || fatal "No fuse/fuse.h. Try: apt-get install libfuse-dev"
221 find /usr/include -path '*gnutls/gnutls.h' | egrep --max-count=1 . \
222 || fatal "No gnutls/gnutls.h. Try: apt-get install libgnutls28-dev"
223 echo -n 'Python2 pyconfig.h: '
224 find /usr/include -path '*/python2*/pyconfig.h' | egrep --max-count=1 . \
225 || fatal "No Python2 pyconfig.h. Try: apt-get install python2.7-dev"
226 echo -n 'Python3 pyconfig.h: '
227 find /usr/include -path '*/python3*/pyconfig.h' | egrep --max-count=1 . \
228 || fatal "No Python3 pyconfig.h. Try: apt-get install python3-dev"
230 PATH="$PATH:/sbin:/usr/sbin:/usr/local/sbin" nginx -v \
231 || fatal "No nginx. Try: apt-get install nginx"
233 perl -v | grep version \
234 || fatal "No perl. Try: apt-get install perl"
235 for mod in ExtUtils::MakeMaker JSON LWP Net::SSL; do
236 echo -n "perl $mod: "
237 perl -e "use $mod; print \"\$$mod::VERSION\\n\"" \
238 || fatal "No $mod. Try: apt-get install perl-modules libcrypt-ssleay-perl libjson-perl libwww-perl"
242 || fatal "No gitolite. Try: apt-get install gitolite3"
245 || fatal "No npm. Try: wget -O- https://nodejs.org/dist/v6.11.2/node-v6.11.2-linux-x64.tar.xz | sudo tar -C /usr/local -xJf - && sudo ln -s ../node-v6.11.2-linux-x64/bin/{node,npm} /usr/local/bin/"
247 cadaver --version | grep -w cadaver \
248 || fatal "No cadaver. Try: apt-get install cadaver"
249 echo -n 'libattr1 xattr.h: '
250 find /usr/include -path '*/attr/xattr.h' | egrep --max-count=1 . \
251 || fatal "No libattr1 xattr.h. Try: apt-get install libattr1-dev"
252 echo -n 'libcurl curl.h: '
253 find /usr/include -path '*/curl/curl.h' | egrep --max-count=1 . \
254 || fatal "No libcurl curl.h. Try: apt-get install libcurl4-gnutls-dev"
255 echo -n 'libpq libpq-fe.h: '
256 find /usr/include -path '*/postgresql/libpq-fe.h' | egrep --max-count=1 . \
257 || fatal "No libpq libpq-fe.h. Try: apt-get install libpq-dev"
258 echo -n 'services/api/config/database.yml: '
259 if [[ ! -f "$WORKSPACE/services/api/config/database.yml" ]]; then
260 fatal "Please provide a database.yml file for the test suite"
264 echo -n 'postgresql: '
265 psql --version || fatal "No postgresql. Try: apt-get install postgresql postgresql-client-common"
266 echo -n 'phantomjs: '
267 phantomjs --version || fatal "No phantomjs. Try: apt-get install phantomjs"
269 which Xvfb || fatal "No xvfb. Try: apt-get install xvfb"
271 dot -V || fatal "No graphviz. Try: apt-get install graphviz"
272 echo -n 'geckodriver: '
273 geckodriver --version | grep ^geckodriver || echo "No geckodriver. Try: wget -O- https://github.com/mozilla/geckodriver/releases/download/v0.23.0/geckodriver-v0.23.0-linux64.tar.gz | sudo tar -C /usr/local/bin -xzf - geckodriver"
275 if [[ "$NEED_SDK_R" = true ]]; then
278 which Rscript || fatal "No Rscript. Try: apt-get install r-base"
280 Rscript -e "library('testthat')" || fatal "No testthat. Try: apt-get install r-cran-testthat"
281 # needed for roxygen2, needed for devtools, needed for R sdk
282 pkg-config --exists libxml-2.0 || fatal "No libxml2. Try: apt-get install libxml2-dev"
283 # needed for pkgdown, builds R SDK doc pages
284 which pandoc || fatal "No pandoc. Try: apt-get install pandoc"
289 # i.e. rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
290 # $BUILD_NUMBER is set by Jenkins if this script is being called as part of a Jenkins run
291 if [[ -f "$1/$2" ]]; then
292 THEDATE=`date +%Y%m%d%H%M%S`
293 mv "$1/$2" "$1/$THEDATE-$BUILD_NUMBER-$2"
294 gzip "$1/$THEDATE-$BUILD_NUMBER-$2"
302 skip[apps/workbench_profile]=1
303 # nodemanager_integration tests are not reliable, see #12061.
304 skip[services/nodemanager_integration]=1
311 echo >&2 "$helpmessage"
319 only[$1]=1; skip[$1]=""; shift
331 only_install="$1"; shift
341 repeat=$((${1}+0)); shift
347 suite="${arg%%_test=*}"
349 testargs["$suite"]="$args"
352 eval export $(echo $arg | cut -d= -f1)=\"$(echo $arg | cut -d= -f2-)\"
355 echo >&2 "$0: Unrecognized option: '$arg'. Try: $0 --help"
361 # R SDK installation is very slow (~360s in a clean environment) and only
362 # required when testing it. Skip that step if it is not needed.
365 if [[ ${#only[@]} -ne 0 ]] &&
366 [[ -z "${only['sdk/R']}" && -z "${only['doc']}" ]]; then
370 if [[ ${skip["sdk/R"]} == 1 && ${skip["doc"]} == 1 ]]; then
374 if [[ $NEED_SDK_R == false ]]; then
375 echo "R SDK not needed, it will not be installed."
380 pid="$(cat "$WORKSPACE/tmp/${svc}.pid")"
381 if [[ -z "$pid" ]] || ! kill -0 "$pid"; then
382 tail $WORKSPACE/tmp/${1}*.log
383 echo "${svc} pid ${pid} not running"
386 echo "${svc} pid ${pid} ok"
391 port="$(cat "$WORKSPACE/tmp/${svc}.port")"
393 if [[ ${svc} =~ -ssl$ || ${svc} = wss ]]; then
396 url="$scheme://localhost:${port}/_health/ping"
397 if ! curl -Ss -H "Authorization: Bearer e687950a23c3a9bceec28c6223a06c79" "${url}" | tee -a /dev/stderr | grep '"OK"'; then
403 checkdiscoverydoc() {
404 dd="https://${1}/discovery/v1/apis/arvados/v1/rest"
405 if ! (set -o pipefail; curl -fsk "$dd" | grep -q ^{ ); then
406 echo >&2 "ERROR: could not retrieve discovery doc from RailsAPI at $dd"
407 tail -v $WORKSPACE/services/api/log/test.log
414 if [[ -n "$ARVADOS_TEST_API_HOST" ]]; then
417 . "$VENVDIR/bin/activate"
418 echo 'Starting API, controller, keepproxy, keep-web, arv-git-httpd, ws, and nginx ssl proxy...'
419 if [[ ! -d "$WORKSPACE/services/api/log" ]]; then
420 mkdir -p "$WORKSPACE/services/api/log"
422 # Remove empty api.pid file if it exists
423 if [[ -f "$WORKSPACE/tmp/api.pid" && ! -s "$WORKSPACE/tmp/api.pid" ]]; then
424 rm -f "$WORKSPACE/tmp/api.pid"
426 all_services_stopped=
429 && eval $(python sdk/python/tests/run_test_server.py start --auth admin) \
430 && export ARVADOS_TEST_API_HOST="$ARVADOS_API_HOST" \
431 && export ARVADOS_TEST_API_INSTALLED="$$" \
432 && checkpidfile api \
433 && checkdiscoverydoc $ARVADOS_API_HOST \
434 && python sdk/python/tests/run_test_server.py start_controller \
435 && checkpidfile controller \
436 && checkhealth controller \
437 && python sdk/python/tests/run_test_server.py start_keep_proxy \
438 && checkpidfile keepproxy \
439 && python sdk/python/tests/run_test_server.py start_keep-web \
440 && checkpidfile keep-web \
441 && checkhealth keep-web \
442 && python sdk/python/tests/run_test_server.py start_arv-git-httpd \
443 && checkpidfile arv-git-httpd \
444 && checkhealth arv-git-httpd \
445 && python sdk/python/tests/run_test_server.py start_ws \
447 && eval $(python sdk/python/tests/run_test_server.py start_nginx) \
448 && checkdiscoverydoc $ARVADOS_API_HOST \
449 && checkpidfile nginx \
450 && export ARVADOS_TEST_PROXY_SERVICES=1 \
451 && (env | egrep ^ARVADOS) \
454 if [[ $fail != 0 ]]; then
455 unset ARVADOS_TEST_API_HOST
461 if [[ -n "$all_services_stopped" ]]; then
464 unset ARVADOS_TEST_API_HOST ARVADOS_TEST_PROXY_SERVICES
465 . "$VENVDIR/bin/activate" || return
467 && python sdk/python/tests/run_test_server.py stop_nginx \
468 && python sdk/python/tests/run_test_server.py stop_arv-git-httpd \
469 && python sdk/python/tests/run_test_server.py stop_ws \
470 && python sdk/python/tests/run_test_server.py stop_keep-web \
471 && python sdk/python/tests/run_test_server.py stop_keep_proxy \
472 && python sdk/python/tests/run_test_server.py stop_controller \
473 && python sdk/python/tests/run_test_server.py stop \
474 && all_services_stopped=1
479 failures+=("($(basename $0) interrupted)")
484 setup_ruby_environment() {
485 if [[ -s "$HOME/.rvm/scripts/rvm" ]] ; then
486 source "$HOME/.rvm/scripts/rvm"
488 elif [[ -s "/usr/local/rvm/scripts/rvm" ]] ; then
489 source "/usr/local/rvm/scripts/rvm"
495 if [[ "$using_rvm" == true ]]; then
496 # If rvm is in use, we can't just put separate "dependencies"
497 # and "gems-under-test" paths to GEM_PATH: passenger resets
498 # the environment to the "current gemset", which would lose
499 # our GEM_PATH and prevent our test suites from running ruby
500 # programs (for example, the Workbench test suite could not
501 # boot an API server or run arv). Instead, we have to make an
502 # rvm gemset and use it for everything.
504 [[ `type rvm | head -n1` == "rvm is a function" ]] \
507 # Put rvm's favorite path back in first place (overriding
508 # virtualenv, which just put itself there). Ignore rvm's
509 # complaint about not being in first place already.
510 rvm use @default 2>/dev/null
512 # Create (if needed) and switch to an @arvados-tests-* gemset,
513 # salting the gemset name so it doesn't interfere with
514 # concurrent builds in other workspaces. Leave the choice of
515 # ruby to the caller.
516 gemset="arvados-tests-$(echo -n "${WORKSPACE}" | md5sum | head -c16)"
517 rvm use "@${gemset}" --create \
518 || fatal 'rvm gemset setup'
522 # When our "bundle install"s need to install new gems to
523 # satisfy dependencies, we want them to go where "gem install
524 # --user-install" would put them. (However, if the caller has
525 # already set GEM_HOME, we assume that's where dependencies
526 # should be installed, and we should leave it alone.)
528 if [ -z "$GEM_HOME" ]; then
529 user_gempath="$(gem env gempath)"
530 export GEM_HOME="${user_gempath%%:*}"
532 PATH="$(gem env gemdir)/bin:$PATH"
534 # When we build and install our own gems, we install them in our
535 # $GEMHOME tmpdir, and we want them to be at the front of GEM_PATH and
536 # PATH so integration tests prefer them over other versions that
537 # happen to be installed in $user_gempath, system dirs, etc.
539 tmpdir_gem_home="$(env - PATH="$PATH" HOME="$GEMHOME" gem env gempath | cut -f1 -d:)"
540 PATH="$tmpdir_gem_home/bin:$PATH"
541 export GEM_PATH="$tmpdir_gem_home"
543 echo "Will install dependencies to $(gem env gemdir)"
544 echo "Will install arvados gems to $tmpdir_gem_home"
545 echo "Gem search path is GEM_PATH=$GEM_PATH"
547 bundle config || gem install bundler \
548 || fatal 'install bundler'
552 if [[ "$using_rvm" == true ]]; then
555 GEM_HOME="$tmpdir_gem_home" GEM_PATH="$tmpdir_gem_home" "$@"
559 gem_uninstall_if_exists() {
560 if gem list "$1\$" | egrep '^\w'; then
561 gem uninstall --force --all --executables "$1"
566 local venvdest="$1"; shift
567 if ! [[ -e "$venvdest/bin/activate" ]] || ! [[ -e "$venvdest/bin/pip" ]]; then
568 virtualenv --setuptools "$@" "$venvdest" || fatal "virtualenv $venvdest failed"
569 elif [[ -n "$short" ]]; then
572 if [[ $("$venvdest/bin/python" --version 2>&1) =~ \ 3\.[012]\. ]]; then
573 # pip 8.0.0 dropped support for python 3.2, e.g., debian wheezy
574 "$venvdest/bin/pip" install --no-cache-dir 'setuptools>=18.5' 'pip>=7,<8'
576 "$venvdest/bin/pip" install --no-cache-dir 'setuptools>=18.5' 'pip>=7'
578 # ubuntu1404 can't seem to install mock via tests_require, but it can do this.
579 "$venvdest/bin/pip" install --no-cache-dir 'mock>=1.0' 'pbr<1.7.0'
585 echo "WORKSPACE=$WORKSPACE"
587 if [[ -z "$CONFIGSRC" ]] && [[ -d "$HOME/arvados-api-server" ]]; then
588 # Jenkins expects us to use this by default.
589 CONFIGSRC="$HOME/arvados-api-server"
592 # Clean up .pyc files that may exist in the workspace
594 find -name '*.pyc' -delete
596 if [[ -z "$temp" ]]; then
600 # Set up temporary install dirs (unless existing dirs were supplied)
601 for tmpdir in VENVDIR VENV3DIR GOPATH GEMHOME PERLINSTALLBASE R_LIBS
603 if [[ -z "${!tmpdir}" ]]; then
604 eval "$tmpdir"="$temp/$tmpdir"
606 if ! [[ -d "${!tmpdir}" ]]; then
607 mkdir "${!tmpdir}" || fatal "can't create ${!tmpdir} (does $temp exist?)"
611 rm -vf "${WORKSPACE}/tmp/*.log"
613 export PERLINSTALLBASE
614 export PERL5LIB="$PERLINSTALLBASE/lib/perl5${PERL5LIB:+:$PERL5LIB}"
620 # Jenkins config requires that glob tmp/*.log match something. Ensure
621 # that happens even if we don't end up running services that set up
623 mkdir -p "${WORKSPACE}/tmp/" || fatal "could not mkdir ${WORKSPACE}/tmp"
624 touch "${WORKSPACE}/tmp/controller.log" || fatal "could not touch ${WORKSPACE}/tmp/controller.log"
626 unset http_proxy https_proxy no_proxy
629 # Note: this must be the last time we change PATH, otherwise rvm will
631 setup_ruby_environment
639 mkdir -p "$GOPATH/src/git.curoverse.com"
640 if [[ ! -h "$GOPATH/src/git.curoverse.com/arvados.git" ]]; then
642 "$GOPATH/src/git.curoverse.com/arvados.git/tmp/GOPATH" \
643 "$GOPATH/src/git.curoverse.com/arvados.git/tmp" \
644 "$GOPATH/src/git.curoverse.com/arvados.git"; do
645 [[ -d "$d" ]] && rmdir "$d"
649 "$GOPATH/src/git.curoverse.com/arvados.git/arvados" \
650 "$GOPATH/src/git.curoverse.com/arvados.git"; do
651 [[ -h "$d" ]] && rm "$d"
653 ln -vsfT "$WORKSPACE" "$GOPATH/src/git.curoverse.com/arvados.git"
654 go get -v github.com/kardianos/govendor
655 cd "$GOPATH/src/git.curoverse.com/arvados.git"
657 "$GOPATH/bin/govendor" sync
658 which goimports >/dev/null || go get golang.org/x/tools/cmd/goimports
659 ) || fatal "Go setup failed"
661 setup_virtualenv "$VENVDIR" --python python2.7
662 . "$VENVDIR/bin/activate"
664 # Needed for run_test_server.py which is used by certain (non-Python) tests.
665 pip install --no-cache-dir PyYAML \
666 || fatal "pip install PyYAML failed"
668 # Preinstall libcloud if using a fork; otherwise nodemanager "pip
669 # install" won't pick it up by default.
670 if [[ -n "$LIBCLOUD_PIN_SRC" ]]; then
671 pip freeze 2>/dev/null | egrep ^apache-libcloud==$LIBCLOUD_PIN \
672 || pip install --pre --ignore-installed --no-cache-dir "$LIBCLOUD_PIN_SRC" >/dev/null \
673 || fatal "pip install apache-libcloud failed"
676 # Deactivate Python 2 virtualenv
679 # If Python 3 is available, set up its virtualenv in $VENV3DIR.
680 # Otherwise, skip dependent tests.
681 PYTHON3=$(which python3)
682 if [[ ${?} = 0 ]]; then
683 setup_virtualenv "$VENV3DIR" --python python3
688 Warning: python3 could not be found. Python 3 tests will be skipped.
693 if ! which bundler >/dev/null
695 gem install --user-install bundler || fatal 'Could not install bundler'
704 if [[ "$remain" -gt 1 ]]; then
705 remain=$((${remain}-1))
706 title "(repeating ${remain} more times)"
710 elif [[ "$retry" == 1 ]]; then
711 read -p 'Try again? [Y/n] ' x
712 if [[ "$x" != "y" ]] && [[ "$x" != "" ]]
724 apps/workbench_units | apps/workbench_functionals | apps/workbench_integration)
727 services/nodemanager | services/nodemanager_integration)
728 suite=services/nodemanager_suite
734 if [[ -n "${skip[$suite]}" || \
735 -n "${skip[$1]}" || \
736 (${#only[@]} -ne 0 && ${only[$suite]} -eq 0 && ${only[$1]} -eq 0) ]]; then
743 gofmt | govendor | doc | lib/cli | lib/cloud/azure | lib/cloud/ec2 | lib/cloud/cloudtest | lib/cmd | lib/dispatchcloud/ssh_executor | lib/dispatchcloud/worker)
744 # don't care whether services are running
747 if ! start_services; then
748 title "test $1 -- failed to start services"
753 retry do_test_once ${@}
763 if which deactivate >/dev/null; then deactivate; fi
764 if ! . "$VENVDIR/bin/activate"
767 elif [[ "$2" == "go" ]]
769 covername="coverage-$(echo "$1" | sed -e 's/\//_/g')"
770 coverflags=("-covermode=count" "-coverprofile=$WORKSPACE/tmp/.$covername.tmp")
771 # We do "go get -t" here to catch compilation errors
772 # before trying "go test". Otherwise, coverage-reporting
773 # mode makes Go show the wrong line numbers when reporting
774 # compilation errors.
775 go get -ldflags "-X main.version=${ARVADOS_VERSION:-$(git log -n1 --format=%H)-dev}" -t "git.curoverse.com/arvados.git/$1" && \
776 cd "$GOPATH/src/git.curoverse.com/arvados.git/$1" && \
777 if [[ -n "${testargs[$1]}" ]]
779 # "go test -check.vv giturl" doesn't work, but this
781 go test ${short:+-short} ${testargs[$1]}
783 # The above form gets verbose even when testargs is
784 # empty, so use this form in such cases:
785 go test ${short:+-short} ${coverflags[@]} "git.curoverse.com/arvados.git/$1"
788 if [[ -f "$WORKSPACE/tmp/.$covername.tmp" ]]
790 go tool cover -html="$WORKSPACE/tmp/.$covername.tmp" -o "$WORKSPACE/tmp/$covername.html"
791 rm "$WORKSPACE/tmp/.$covername.tmp"
793 [[ $result = 0 ]] && gofmt -e -d *.go
794 elif [[ "$2" == "pip" ]]
797 cd "$WORKSPACE/$1" && while :
799 tries=$((${tries}+1))
800 # $3 can name a path directory for us to use, including trailing
801 # slash; e.g., the bin/ subdirectory of a virtualenv.
802 "${3}python" setup.py ${short:+--short-tests-only} test ${testargs[$1]}
804 if [[ ${tries} < 3 && ${result} == 137 ]]
806 printf '\n*****\n%s tests killed -- retrying\n*****\n\n' "$1"
812 elif [[ "$2" != "" ]]
819 checkexit $result "$1 tests"
820 title "test $1 -- `timer`"
825 if [[ -n "${skip[install]}" || ( -n "${only_install}" && "${only_install}" != "${1}" && "${only_install}" != "${2}" ) ]]; then
828 retry do_install_once ${@}
836 if which deactivate >/dev/null; then deactivate; fi
837 if [[ "$1" != "env" ]] && ! . "$VENVDIR/bin/activate"; then
839 elif [[ "$2" == "go" ]]
841 go get -ldflags "-X main.version=${ARVADOS_VERSION:-$(git log -n1 --format=%H)-dev}" -t "git.curoverse.com/arvados.git/$1"
842 elif [[ "$2" == "pip" ]]
844 # $3 can name a path directory for us to use, including trailing
845 # slash; e.g., the bin/ subdirectory of a virtualenv.
847 # Need to change to a different directory after creating
848 # the source dist package to avoid a pip bug.
849 # see https://arvados.org/issues/5766 for details.
851 # Also need to install twice, because if it believes the package is
852 # already installed, pip it won't install it. So the first "pip
853 # install" ensures that the dependencies are met, the second "pip
854 # install" ensures that we've actually installed the local package
857 && "${3}python" setup.py sdist rotate --keep=1 --match .tar.gz \
859 && "${3}pip" install --no-cache-dir --quiet "$WORKSPACE/$1/dist"/*.tar.gz \
860 && "${3}pip" install --no-cache-dir --quiet --no-deps --ignore-installed "$WORKSPACE/$1/dist"/*.tar.gz
861 elif [[ "$2" != "" ]]
868 checkexit $result "$1 install"
869 title "install $1 -- `timer`"
873 bundle_install_trylocal() {
876 echo "(Running bundle install --local. 'could not find package' messages are OK.)"
877 if ! bundle install --local --no-deployment; then
878 echo "(Running bundle install again, without --local.)"
879 bundle install --no-deployment
886 cd "$WORKSPACE/doc" \
887 && bundle_install_trylocal \
894 with_test_gemset gem_uninstall_if_exists "$gemname" \
895 && cd "$WORKSPACE/$srcpath" \
896 && bundle_install_trylocal \
897 && gem build "$gemname.gemspec" \
898 && with_test_gemset gem install --no-document $(ls -t "$gemname"-*.gem|head -n1)
902 install_gem arvados sdk/ruby
906 if [[ "$NEED_SDK_R" = true ]]; then
907 cd "$WORKSPACE/sdk/R" \
908 && Rscript --vanilla install_deps.R
913 cd "$WORKSPACE/sdk/perl" \
914 && perl Makefile.PL INSTALL_BASE="$PERLINSTALLBASE" \
915 && make install INSTALLDIRS=perl
919 install_gem arvados-cli sdk/cli
922 install_services/login-sync() {
923 install_gem arvados-login-sync services/login-sync
926 install_services/api() {
928 cd "$WORKSPACE/services/api" \
929 && RAILS_ENV=test bundle_install_trylocal
931 rm -f config/environments/test.rb
932 cp config/environments/test.rb.example config/environments/test.rb
934 if [ -n "$CONFIGSRC" ]
936 for f in database.yml
938 cp "$CONFIGSRC/$f" config/ || fatal "$f"
942 # Clear out any lingering postgresql connections to the test
943 # database, so that we can drop it. This assumes the current user
944 # is a postgresql superuser.
945 cd "$WORKSPACE/services/api" \
946 && test_database=$(python -c "import yaml; print yaml.safe_load(file('config/database.yml'))['test']['database']") \
947 && psql "$test_database" -c "SELECT pg_terminate_backend (pg_stat_activity.pid::int) FROM pg_stat_activity WHERE pg_stat_activity.datname = '$test_database';" 2>/dev/null
949 mkdir -p "$WORKSPACE/services/api/tmp/pids"
951 cert="$WORKSPACE/services/api/tmp/self-signed"
952 if [[ ! -e "$cert.pem" || "$(date -r "$cert.pem" +%s)" -lt 1512659226 ]]; then
954 dir="$WORKSPACE/services/api/tmp"
956 openssl req -newkey rsa:2048 -nodes -subj '/C=US/ST=State/L=City/CN=localhost' -out "$cert.csr" -keyout "$cert.key" </dev/null
957 openssl x509 -req -in "$cert.csr" -signkey "$cert.key" -out "$cert.pem" -days 3650 -extfile <(printf 'subjectAltName=DNS:localhost,DNS:::1,DNS:0.0.0.0,DNS:127.0.0.1,IP:::1,IP:0.0.0.0,IP:127.0.0.1')
961 cd "$WORKSPACE/services/api" \
963 && mkdir -p tmp/git \
965 && tar xf ../../test/test.git.tar \
966 && mkdir -p internal.git \
967 && git --git-dir internal.git init \
970 cd "$WORKSPACE/services/api" \
971 && RAILS_ENV=test bundle exec rails db:environment:set \
972 && RAILS_ENV=test bundle exec rake db:drop \
973 && RAILS_ENV=test bundle exec rake db:setup \
974 && RAILS_ENV=test bundle exec rake db:fixtures:load
977 declare -a pythonstuff
984 services/dockercleaner:py3
987 tools/crunchstat-summary
988 tools/crunchstat-summary:py3
992 gostuff=($(git grep -lw func | grep \\.go | sed -e 's/\/[^\/]*$//' | sort -u))
994 install_apps/workbench() {
995 cd "$WORKSPACE/apps/workbench" \
996 && mkdir -p tmp/cache \
997 && RAILS_ENV=test bundle_install_trylocal \
998 && RAILS_ENV=test RAILS_GROUPS=assets bundle exec rake npm:install
1005 ARVADOS_API_HOST=qr1hi.arvadosapi.com
1006 # Make sure python-epydoc is installed or the next line won't
1008 PYTHONPATH=$WORKSPACE/sdk/python/ bundle exec rake linkchecker baseurl=file://$WORKSPACE/doc/.site/ arvados_workbench_host=https://workbench.$ARVADOS_API_HOST arvados_api_host=$ARVADOS_API_HOST
1013 cd "$WORKSPACE" || return 1
1014 dirs=$(ls -d */ | egrep -v 'vendor|tmp')
1015 [[ -z "$(gofmt -e -d $dirs | tee -a /dev/stderr)" ]]
1021 cd "$GOPATH/src/git.curoverse.com/arvados.git"
1022 # Remove cached source dirs in workdir. Otherwise, they will
1023 # not qualify as +missing or +external below, and we won't be
1024 # able to detect that they're missing from vendor/vendor.json.
1027 "$GOPATH/bin/govendor" sync
1028 if [[ -n $("$GOPATH/bin/govendor" list +unused +missing +external | tee /dev/stderr) ]]; then
1029 echo >&2 "vendor/vendor.json has unused or missing dependencies -- try:
1031 (export GOPATH=\"${GOPATH}\"; cd \$GOPATH/src/git.curoverse.com/arvados.git && \$GOPATH/bin/govendor add +missing +external && \$GOPATH/bin/govendor remove +unused)
1039 test_services/api() {
1040 rm -f "$WORKSPACE/services/api/git-commit.version"
1041 cd "$WORKSPACE/services/api" \
1042 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake test TESTOPTS='-v -d' ${testargs[services/api]}
1046 cd "$WORKSPACE/sdk/ruby" \
1047 && bundle exec rake test TESTOPTS=-v ${testargs[sdk/ruby]}
1051 if [[ "$NEED_SDK_R" = true ]]; then
1052 cd "$WORKSPACE/sdk/R" \
1053 && Rscript --vanilla run_test.R
1058 cd "$WORKSPACE/sdk/cli" \
1059 && mkdir -p /tmp/keep \
1060 && KEEP_LOCAL_STORE=/tmp/keep bundle exec rake test TESTOPTS=-v ${testargs[sdk/cli]}
1063 test_sdk/java-v2() {
1064 cd "$WORKSPACE/sdk/java-v2" && gradle test
1067 test_services/login-sync() {
1068 cd "$WORKSPACE/services/login-sync" \
1069 && bundle exec rake test TESTOPTS=-v ${testargs[services/login-sync]}
1072 test_services/nodemanager_integration() {
1073 cd "$WORKSPACE/services/nodemanager" \
1074 && tests/integration_test.py ${testargs[services/nodemanager_integration]}
1077 test_apps/workbench_units() {
1078 local TASK="test:units"
1079 if [[ -n "${testargs[apps/workbench]}" ]] || [[ -n "${testargs[apps/workbench_units]}" ]]; then
1082 cd "$WORKSPACE/apps/workbench" \
1083 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake ${TASK} TESTOPTS='-v -d' ${testargs[apps/workbench]} ${testargs[apps/workbench_units]}
1086 test_apps/workbench_functionals() {
1087 local TASK="test:functionals"
1088 if [[ -n "${testargs[apps/workbench]}" ]] || [[ -n "${testargs[apps/workbench_functionals]}" ]]; then
1091 cd "$WORKSPACE/apps/workbench" \
1092 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake ${TASK} TESTOPTS='-v -d' ${testargs[apps/workbench]} ${testargs[apps/workbench_functionals]}
1095 test_apps/workbench_integration() {
1096 local TASK="test:integration"
1097 if [[ -n "${testargs[apps/workbench]}" ]] || [[ -n "${testargs[apps/workbench_integration]}" ]]; then
1100 cd "$WORKSPACE/apps/workbench" \
1101 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake ${TASK} TESTOPTS='-v -d' ${testargs[apps/workbench]} ${testargs[apps/workbench_integration]}
1104 test_apps/workbench_benchmark() {
1105 local TASK="test:benchmark"
1106 if [[ -n "${testargs[apps/workbench]}" ]] || [[ -n "${testargs[apps/workbench_benchmark]}" ]]; then
1109 cd "$WORKSPACE/apps/workbench" \
1110 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake ${TASK} ${testargs[apps/workbench_benchmark]}
1113 test_apps/workbench_profile() {
1114 local TASK="test:profile"
1115 if [[ -n "${testargs[apps/workbench]}" ]] || [[ -n "${testargs[apps/workbench_profile]}" ]]; then
1118 cd "$WORKSPACE/apps/workbench" \
1119 && env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} bundle exec rake ${TASK} ${testargs[apps/workbench_profile]}
1123 # Install parts needed by test suites
1125 do_install cmd/arvados-server go
1128 do_install sdk/python pip
1130 do_install services/api
1131 do_install services/arv-git-httpd go
1132 do_install services/keepproxy go
1133 do_install services/keepstore go
1134 do_install services/keep-web go
1135 do_install services/ws go
1145 do_install services/login-sync
1146 for p in "${pythonstuff[@]}"
1149 if [[ ${dir} = ${p} ]]; then
1150 if [[ -z ${skip[python2]} ]]; then
1151 do_install ${dir} pip
1153 elif [[ -n ${PYTHON3} ]]; then
1154 if [[ -z ${skip[python3]} ]]; then
1155 do_install ${dir} pip "$VENV3DIR/bin/"
1159 do_install services/api
1160 for g in "${gostuff[@]}"
1164 do_install apps/workbench
1169 do_test services/api
1171 # Shortcut for when we're only running apiserver tests. This saves a bit of time,
1172 # because we don't need to start up the api server for subsequent tests.
1173 if [ ! -z "$only" ] && [ "$only" == "services/api" ]; then
1174 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
1184 do_test services/login-sync
1186 do_test services/nodemanager_integration
1187 for p in "${pythonstuff[@]}"
1190 if [[ ${dir} = ${p} ]]; then
1191 if [[ -z ${skip[python2]} ]]; then
1194 elif [[ -n ${PYTHON3} ]]; then
1195 if [[ -z ${skip[python3]} ]]; then
1196 do_test ${dir} pip "$VENV3DIR/bin/"
1201 for g in "${gostuff[@]}"
1205 do_test apps/workbench_units
1206 do_test apps/workbench_functionals
1207 do_test apps/workbench_integration
1208 do_test apps/workbench_benchmark
1209 do_test apps/workbench_profile
1212 help_interactive() {
1213 echo "== Interactive commands:"
1214 echo "TARGET (short for 'test DIR')"
1216 echo "test TARGET:py3 (test with python3)"
1217 echo "test TARGET -check.vv (pass arguments to test)"
1218 echo "install TARGET"
1219 echo "install env (go/python libs)"
1220 echo "install deps (go/python libs + arvados components needed for integration tests)"
1221 echo "reset (...services used by integration tests)"
1223 echo "== Test targets:"
1224 echo "${!testfuncargs[@]}" | tr ' ' '\n' | sort | column
1229 declare -A testfuncargs=()
1230 for g in "${gostuff[@]}"; do
1231 testfuncargs[$g]="$g go"
1233 for p in "${pythonstuff[@]}"; do
1235 testfuncargs[$dir]="$dir pip $VENVDIR/bin/"
1236 testfuncargs[$dir:py3]="$dir pip $VENV3DIR/bin/"
1239 testfuncargs["sdk/cli"]="sdk/cli"
1241 if [[ -z ${interactive} ]]; then
1248 if [[ -e "$VENVDIR/bin/activate" ]]; then stop_services; fi
1250 if [[ "$TERM" = dumb ]]; then
1251 # assume emacs, or something, is offering a history buffer
1252 # and pre-populating the command will only cause trouble
1254 elif [[ ! -e "$VENVDIR/bin/activate" ]]; then
1255 nextcmd="install deps"
1262 nextcmd="install deps"
1264 HISTFILE="$WORKSPACE/tmp/.history"
1266 while read -p 'What next? ' -e -i "$nextcmd" nextcmd; do
1267 history -s "$nextcmd"
1269 read verb target opts <<<"${nextcmd}"
1270 target="${target%/}"
1271 target="${target/\/:/:}"
1288 testargs["$target"]="${opts}"
1289 tt="${testfuncargs[${target}]}"
1299 if [[ ${#successes[@]} -gt 0 || ${#failures[@]} -gt 0 ]]; then