2 # Copyright (C) The Arvados Authors. All rights reserved.
4 # SPDX-License-Identifier: AGPL-3.0
7 . `dirname "$(readlink -f "$0")"`/run-library.sh
9 read -rd "\000" helpmessage <<EOF
10 $(basename $0): Install and test Arvados components.
12 Exit non-zero if any tests fail.
15 $(basename $0) WORKSPACE=/path/to/arvados [options]
19 --skip FOO Do not test the FOO component.
20 --skip sanity Skip initial dev environment sanity checks.
21 --skip install Do not run any install steps. Just run tests.
22 You should provide GOPATH, GEMHOME, and VENVDIR options
23 from a previous invocation if you use this option.
24 --only FOO Do not test anything except the FOO component.
25 --temp DIR Install components and dependencies under DIR instead of
26 making a new temporary directory. Implies --leave-temp.
27 --leave-temp Do not remove GOPATH, virtualenv, and other temp dirs at exit.
28 Instead, show the path to give as --temp to reuse them in
29 subsequent invocations.
30 --repeat N Repeat each install/test step until it succeeds N times.
31 --retry Prompt to retry if an install or test suite fails.
32 --only-install Run specific install step
33 --short Skip (or scale down) some slow tests.
34 --interactive Set up, then prompt for test/install steps to perform.
35 WORKSPACE=path Arvados source tree to test.
36 CONFIGSRC=path Dir with config.yml file containing PostgreSQL section for use by tests.
37 services/api_test="TEST=test/functional/arvados/v1/collections_controller_test.rb"
38 Restrict apiserver tests to the given file
39 sdk/python_test="--test-suite tests.test_keep_locator"
40 Restrict Python SDK tests to the given class
41 apps/workbench_test="TEST=test/integration/pipeline_instances_test.rb"
42 Restrict Workbench tests to the given file
43 services/githttpd_test="-check.vv"
44 Show all log messages, even when tests pass (also works
45 with services/keepstore_test etc.)
47 Print more debug messages
48 envvar=value Set \$envvar to value. Primarily useful for WORKSPACE,
49 *_test, and other examples shown above.
51 Assuming "--skip install" is not given, all components are installed
52 into \$GOPATH, \$VENDIR, and \$GEMHOME before running any tests. Many
53 test suites depend on other components being installed, and installing
54 everything tends to be quicker than debugging dependencies.
56 As a special concession to the current CI server config, CONFIGSRC
57 defaults to $HOME/arvados-api-server if that directory exists.
59 More information and background:
61 https://arvados.org/projects/arvados/wiki/Running_tests
66 apps/workbench_units (*)
67 apps/workbench_functionals (*)
68 apps/workbench_integration (*)
69 apps/workbench_benchmark
70 apps/workbench_profile
77 lib/controller/federation
78 lib/controller/railsproxy
87 lib/dispatchcloud/container
88 lib/dispatchcloud/scheduler
89 lib/dispatchcloud/sshexecutor
90 lib/dispatchcloud/worker
97 services/dockercleaner
104 services/keep-balance
106 services/crunch-dispatch-local
107 services/crunch-dispatch-slurm
129 tools/crunchstat-summary
130 tools/crunchstat-summary:py3
133 tools/keep-block-check
135 (*) apps/workbench is shorthand for apps/workbench_units +
136 apps/workbench_functionals + apps/workbench_integration
140 # First make sure to remove any ARVADOS_ variables from the calling
141 # environment that could interfere with the tests.
142 unset $(env | cut -d= -f1 | grep \^ARVADOS_)
144 # Reset other variables that could affect our [tests'] behavior by
154 export LANG=en_US.UTF-8
164 if [[ -z "$temp" ]]; then
165 # we did not even get as far as making a temp dir
167 elif [[ -z "$temp_preserve" ]]; then
168 # Go creates readonly dirs in the module cache, which cause
169 # "rm -rf" to fail unless we chmod first.
173 echo "Leaving behind temp dirs in $temp"
179 echo >&2 "Fatal: $* (encountered in ${FUNCNAME[1]} at ${BASH_SOURCE[1]} line ${BASH_LINENO[0]})"
185 if which create-plot-data-from-log.sh >/dev/null; then
186 create-plot-data-from-log.sh $BUILD_NUMBER "$WORKSPACE/apps/workbench/log/test.log" "$WORKSPACE/apps/workbench/log/"
188 rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
190 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
197 [[ -n "${skip[sanity]}" ]] && return 0
198 ( [[ -n "$WORKSPACE" ]] && [[ -d "$WORKSPACE/services" ]] ) \
199 || fatal "WORKSPACE environment variable not set to a source directory (see: $0 --help)"
200 [[ -z "$CONFIGSRC" ]] || [[ -s "$CONFIGSRC/config.yml" ]] \
201 || fatal "CONFIGSRC is $CONFIGSRC but '$CONFIGSRC/config.yml' is empty or not found (see: $0 --help)"
202 echo Checking dependencies:
203 echo "locale: ${LANG}"
204 [[ "$(locale charmap)" = "UTF-8" ]] \
205 || fatal "Locale '${LANG}' is broken/missing. Try: echo ${LANG} | sudo tee -a /etc/locale.gen && sudo locale-gen"
208 || fatal "No ruby. Install >=2.1.9 (using rbenv, rvm, or source)"
211 || fatal "No go binary. See http://golang.org/doc/install"
212 [[ $(go version) =~ go1.([0-9]+) ]] && [[ ${BASH_REMATCH[1]} -ge 12 ]] \
213 || fatal "Go >= 1.12 required. See http://golang.org/doc/install"
215 gcc --version | egrep ^gcc \
216 || fatal "No gcc. Try: apt-get install build-essential"
218 find /usr/include -path '*fuse/fuse.h' | egrep --max-count=1 . \
219 || fatal "No fuse/fuse.h. Try: apt-get install libfuse-dev"
221 find /usr/include -path '*gnutls/gnutls.h' | egrep --max-count=1 . \
222 || fatal "No gnutls/gnutls.h. Try: apt-get install libgnutls28-dev"
223 echo -n 'virtualenv: '
224 python3 -m venv -h | egrep --max-count=1 . \
225 || fatal "No virtualenv. Try: apt-get install python3-venv"
226 echo -n 'Python3 pyconfig.h: '
227 find /usr/include -path '*/python3*/pyconfig.h' | egrep --max-count=1 . \
228 || fatal "No Python3 pyconfig.h. Try: apt-get install python3-dev"
230 || fatal "No netstat. Try: apt-get install net-tools"
232 PATH="$PATH:/sbin:/usr/sbin:/usr/local/sbin" nginx -v \
233 || fatal "No nginx. Try: apt-get install nginx"
235 perl -v | grep version \
236 || fatal "No perl. Try: apt-get install perl"
237 for mod in ExtUtils::MakeMaker JSON LWP Net::SSL; do
238 echo -n "perl $mod: "
239 perl -e "use $mod; print \"\$$mod::VERSION\\n\"" \
240 || fatal "No $mod. Try: apt-get install perl-modules libcrypt-ssleay-perl libjson-perl libwww-perl"
244 || fatal "No gitolite. Try: apt-get install gitolite3"
247 || fatal "No npm. Try: wget -O- https://nodejs.org/dist/v10.23.1/node-v10.23.1-linux-x64.tar.xz | sudo tar -C /usr/local -xJf - && sudo ln -s ../node-v10.23.1-linux-x64/bin/{node,npm} /usr/local/bin/"
249 cadaver --version | grep -w cadaver \
250 || fatal "No cadaver. Try: apt-get install cadaver"
251 echo -n 'libattr1 xattr.h: '
252 find /usr/include -path '*/attr/xattr.h' | egrep --max-count=1 . \
253 || fatal "No libattr1 xattr.h. Try: apt-get install libattr1-dev"
254 echo -n 'libcurl curl.h: '
255 find /usr/include -path '*/curl/curl.h' | egrep --max-count=1 . \
256 || fatal "No libcurl curl.h. Try: apt-get install libcurl4-gnutls-dev"
257 echo -n 'libpq libpq-fe.h: '
258 find /usr/include -path '*/postgresql/libpq-fe.h' | egrep --max-count=1 . \
259 || fatal "No libpq libpq-fe.h. Try: apt-get install libpq-dev"
260 echo -n 'libpam pam_appl.h: '
261 find /usr/include -path '*/security/pam_appl.h' | egrep --max-count=1 . \
262 || fatal "No libpam pam_appl.h. Try: apt-get install libpam0g-dev"
263 echo -n 'postgresql: '
264 psql --version || fatal "No postgresql. Try: apt-get install postgresql postgresql-client-common"
265 echo -n 'phantomjs: '
266 phantomjs --version || fatal "No phantomjs. Try: apt-get install phantomjs"
268 which Xvfb || fatal "No xvfb. Try: apt-get install xvfb"
270 dot -V || fatal "No graphviz. Try: apt-get install graphviz"
271 echo -n 'geckodriver: '
272 geckodriver --version | grep ^geckodriver || echo "No geckodriver. Try: arvados-server install"
273 echo -n 'singularity: '
274 singularity --version || fatal "No singularity. Try: arvados-server install"
275 echo -n 'docker client: '
276 docker --version || echo "No docker client. Try: arvados-server install"
277 echo -n 'docker server: '
278 docker info --format='{{.ServerVersion}}' || echo "No docker server. Try: arvados-server install"
280 if [[ "$NEED_SDK_R" = true ]]; then
283 which Rscript || fatal "No Rscript. Try: apt-get install r-base"
285 Rscript -e "library('testthat')" || fatal "No testthat. Try: apt-get install r-cran-testthat"
286 # needed for roxygen2, needed for devtools, needed for R sdk
287 pkg-config --exists libxml-2.0 || fatal "No libxml2. Try: apt-get install libxml2-dev"
288 # needed for pkgdown, builds R SDK doc pages
289 which pandoc || fatal "No pandoc. Try: apt-get install pandoc"
291 echo 'procs with /dev/fuse open:'
292 find /proc/*/fd -lname /dev/fuse 2>/dev/null | cut -d/ -f3 | xargs --no-run-if-empty ps -lywww
293 echo 'grep fuse /proc/self/mountinfo:'
294 grep fuse /proc/self/mountinfo
298 # i.e. rotate_logfile "$WORKSPACE/apps/workbench/log/" "test.log"
299 # $BUILD_NUMBER is set by Jenkins if this script is being called as part of a Jenkins run
300 if [[ -f "$1/$2" ]]; then
301 THEDATE=`date +%Y%m%d%H%M%S`
302 mv "$1/$2" "$1/$THEDATE-$BUILD_NUMBER-$2"
303 gzip "$1/$THEDATE-$BUILD_NUMBER-$2"
311 skip[apps/workbench_profile]=1
318 echo >&2 "$helpmessage"
326 only[$1]=1; skip[$1]=""; shift
338 only_install="$1"; shift
348 repeat=$((${1}+0)); shift
354 suite="${arg%%_test=*}"
356 testargs["$suite"]="$args"
359 eval export $(echo $arg | cut -d= -f1)=\"$(echo $arg | cut -d= -f2-)\"
362 echo >&2 "$0: Unrecognized option: '$arg'. Try: $0 --help"
368 # R SDK installation is very slow (~360s in a clean environment) and only
369 # required when testing it. Skip that step if it is not needed.
372 if [[ ${#only[@]} -ne 0 ]] &&
373 [[ -z "${only['sdk/R']}" && -z "${only['doc']}" ]]; then
377 if [[ ${skip["sdk/R"]} == 1 && ${skip["doc"]} == 1 ]]; then
381 if [[ $NEED_SDK_R == false ]]; then
382 echo "R SDK not needed, it will not be installed."
387 pid="$(cat "$WORKSPACE/tmp/${svc}.pid")"
388 if [[ -z "$pid" ]] || ! kill -0 "$pid"; then
389 tail $WORKSPACE/tmp/${1}*.log
390 echo "${svc} pid ${pid} not running"
393 echo "${svc} pid ${pid} ok"
398 base=$("${VENV3DIR}/bin/python3" -c "import yaml; print(list(yaml.safe_load(open('$ARVADOS_CONFIG','r'))['Clusters']['zzzzz']['Services']['$1']['InternalURLs'].keys())[0])")
399 url="$base/_health/ping"
400 if ! curl -Ss -H "Authorization: Bearer e687950a23c3a9bceec28c6223a06c79" "${url}" | tee -a /dev/stderr | grep '"OK"'; then
406 checkdiscoverydoc() {
407 dd="https://${1}/discovery/v1/apis/arvados/v1/rest"
408 if ! (set -o pipefail; curl -fsk "$dd" | grep -q ^{ ); then
409 echo >&2 "ERROR: could not retrieve discovery doc from RailsAPI at $dd"
410 tail -v $WORKSPACE/tmp/railsapi.log
417 if [[ -n "$ARVADOS_TEST_API_HOST" ]]; then
420 . "$VENV3DIR/bin/activate"
421 echo 'Starting API, controller, keepproxy, keep-web, githttpd, ws, and nginx ssl proxy...'
422 if [[ ! -d "$WORKSPACE/services/api/log" ]]; then
423 mkdir -p "$WORKSPACE/services/api/log"
425 # Remove empty api.pid file if it exists
426 if [[ -f "$WORKSPACE/tmp/api.pid" && ! -s "$WORKSPACE/tmp/api.pid" ]]; then
427 rm -f "$WORKSPACE/tmp/api.pid"
429 all_services_stopped=
433 && eval $(python3 sdk/python/tests/run_test_server.py start --auth admin) \
434 && export ARVADOS_TEST_API_HOST="$ARVADOS_API_HOST" \
435 && export ARVADOS_TEST_API_INSTALLED="$$" \
436 && checkpidfile api \
437 && checkdiscoverydoc $ARVADOS_API_HOST \
438 && eval $(python3 sdk/python/tests/run_test_server.py start_nginx) \
439 && checkpidfile nginx \
440 && python3 sdk/python/tests/run_test_server.py start_controller \
441 && checkpidfile controller \
442 && checkhealth Controller \
443 && checkdiscoverydoc $ARVADOS_API_HOST \
444 && python3 sdk/python/tests/run_test_server.py start_keep_proxy \
445 && checkpidfile keepproxy \
446 && python3 sdk/python/tests/run_test_server.py start_keep-web \
447 && checkpidfile keep-web \
448 && checkhealth WebDAV \
449 && python3 sdk/python/tests/run_test_server.py start_githttpd \
450 && checkpidfile githttpd \
451 && checkhealth GitHTTP \
452 && python3 sdk/python/tests/run_test_server.py start_ws \
454 && export ARVADOS_TEST_PROXY_SERVICES=1 \
455 && (env | egrep ^ARVADOS) \
458 if [[ $fail != 0 ]]; then
459 unset ARVADOS_TEST_API_HOST
465 if [[ -n "$all_services_stopped" ]]; then
468 unset ARVADOS_TEST_API_HOST ARVADOS_TEST_PROXY_SERVICES
469 . "$VENV3DIR/bin/activate" || return
471 && python3 sdk/python/tests/run_test_server.py stop_nginx \
472 && python3 sdk/python/tests/run_test_server.py stop_githttpd \
473 && python3 sdk/python/tests/run_test_server.py stop_ws \
474 && python3 sdk/python/tests/run_test_server.py stop_keep-web \
475 && python3 sdk/python/tests/run_test_server.py stop_keep_proxy \
476 && python3 sdk/python/tests/run_test_server.py stop_controller \
477 && python3 sdk/python/tests/run_test_server.py stop \
478 && all_services_stopped=1
484 if [[ -n "$ignore_sigint" ]]; then
485 echo >&2 "ignored SIGINT"
488 failures+=("($(basename $0) interrupted)")
493 setup_ruby_environment() {
494 if [[ -s "$HOME/.rvm/scripts/rvm" ]] ; then
495 source "$HOME/.rvm/scripts/rvm"
497 elif [[ -s "/usr/local/rvm/scripts/rvm" ]] ; then
498 source "/usr/local/rvm/scripts/rvm"
504 if [[ "$using_rvm" == true ]]; then
505 # If rvm is in use, we can't just put separate "dependencies"
506 # and "gems-under-test" paths to GEM_PATH: passenger resets
507 # the environment to the "current gemset", which would lose
508 # our GEM_PATH and prevent our test suites from running ruby
509 # programs (for example, the Workbench test suite could not
510 # boot an API server or run arv). Instead, we have to make an
511 # rvm gemset and use it for everything.
513 [[ `type rvm | head -n1` == "rvm is a function" ]] \
516 # Put rvm's favorite path back in first place (overriding
517 # virtualenv, which just put itself there). Ignore rvm's
518 # complaint about not being in first place already.
519 rvm use @default 2>/dev/null
521 # Create (if needed) and switch to an @arvados-tests-* gemset,
522 # salting the gemset name so it doesn't interfere with
523 # concurrent builds in other workspaces. Leave the choice of
524 # ruby to the caller.
525 gemset="arvados-tests-$(echo -n "${WORKSPACE}" | md5sum | head -c16)"
526 rvm use "@${gemset}" --create \
527 || fatal 'rvm gemset setup'
530 (bundle version | grep -q 2.2.19) || gem install --no-document bundler -v 2.2.19
531 bundle="$(which bundle)"
533 "$bundle" version | grep 2.2.19 || fatal 'install bundler'
535 # When our "bundle install"s need to install new gems to
536 # satisfy dependencies, we want them to go where "gem install
537 # --user-install" would put them. (However, if the caller has
538 # already set GEM_HOME, we assume that's where dependencies
539 # should be installed, and we should leave it alone.)
541 if [ -z "$GEM_HOME" ]; then
542 user_gempath="$(gem env gempath)"
543 export GEM_HOME="${user_gempath%%:*}"
545 PATH="$(gem env gemdir)/bin:$PATH"
547 # When we build and install our own gems, we install them in our
548 # $GEMHOME tmpdir, and we want them to be at the front of GEM_PATH and
549 # PATH so integration tests prefer them over other versions that
550 # happen to be installed in $user_gempath, system dirs, etc.
552 tmpdir_gem_home="$(env - PATH="$PATH" HOME="$GEMHOME" gem env gempath | cut -f1 -d:)"
553 PATH="$tmpdir_gem_home/bin:$PATH"
554 export GEM_PATH="$tmpdir_gem_home:$(gem env gempath)"
556 echo "Will install dependencies to $(gem env gemdir)"
557 echo "Will install bundler and arvados gems to $tmpdir_gem_home"
558 echo "Gem search path is GEM_PATH=$GEM_PATH"
563 for v in ${versions[@]}; do
564 if ! gem list --installed --version "${v}" bundler >/dev/null; then
565 gem install --no-document --user $(for v in ${versions[@]}; do echo bundler:${v}; done)
569 "$bundle" version | tee /dev/stderr | grep -q 'version 2'
570 ) || fatal 'install bundler'
571 if test -d /var/lib/arvados-arvbox/ ; then
572 # Inside arvbox, use bundler-installed binstubs. The
573 # system bundler and rail's own bin/bundle refuse to work.
575 bundle=binstubs/bundle
581 if [[ "$using_rvm" == true ]]; then
584 GEM_HOME="$tmpdir_gem_home" GEM_PATH="$tmpdir_gem_home" "$@"
588 gem_uninstall_if_exists() {
589 if gem list "$1\$" | egrep '^\w'; then
590 gem uninstall --force --all --executables "$1"
595 local venvdest="$1"; shift
596 if ! [[ -e "$venvdest/bin/activate" ]] || ! [[ -e "$venvdest/bin/pip3" ]]; then
597 python3 -m venv "$@" "$venvdest" || fatal "virtualenv $venvdest failed"
598 elif [[ -n "$short" ]]; then
601 "$venvdest/bin/pip3" install --no-cache-dir 'setuptools>=18.5' 'pip>=7'
605 # If dependencies like ruby, go, etc. are installed in
606 # /var/lib/arvados -- presumably by "arvados-server install" --
607 # then we want to use those versions, instead of whatever happens
608 # to be installed in /usr.
609 PATH="/var/lib/arvados/bin:${PATH}"
612 echo "WORKSPACE=$WORKSPACE"
614 # Clean up .pyc files that may exist in the workspace
616 find -name '*.pyc' -delete
618 if [[ -z "$temp" ]]; then
622 # Set up temporary install dirs (unless existing dirs were supplied)
623 for tmpdir in VENV3DIR GOPATH GEMHOME PERLINSTALLBASE R_LIBS
625 if [[ -z "${!tmpdir}" ]]; then
626 eval "$tmpdir"="$temp/$tmpdir"
628 if ! [[ -d "${!tmpdir}" ]]; then
629 mkdir "${!tmpdir}" || fatal "can't create ${!tmpdir} (does $temp exist?)"
633 rm -vf "${WORKSPACE}/tmp/*.log"
635 export PERLINSTALLBASE
636 export PERL5LIB="$PERLINSTALLBASE/lib/perl5${PERL5LIB:+:$PERL5LIB}"
641 # Make sure our compiled binaries under test override anything
642 # else that might be in the environment.
643 export PATH=$GOPATH/bin:$PATH
645 # Jenkins config requires that glob tmp/*.log match something. Ensure
646 # that happens even if we don't end up running services that set up
648 mkdir -p "${WORKSPACE}/tmp/" || fatal "could not mkdir ${WORKSPACE}/tmp"
649 touch "${WORKSPACE}/tmp/controller.log" || fatal "could not touch ${WORKSPACE}/tmp/controller.log"
651 unset http_proxy https_proxy no_proxy
653 # Note: this must be the last time we change PATH, otherwise rvm will
655 setup_ruby_environment
661 go mod download || fatal "Go deps failed"
662 which goimports >/dev/null || go install golang.org/x/tools/cmd/goimports@latest || fatal "Go setup failed"
664 setup_virtualenv "$VENV3DIR"
665 . "$VENV3DIR/bin/activate"
667 # Needed for run_test_server.py which is used by certain (non-Python) tests.
668 # pdoc3 needed to generate the Python SDK documentation.
671 "${VENV3DIR}/bin/pip3" install wheel
672 "${VENV3DIR}/bin/pip3" install PyYAML
673 "${VENV3DIR}/bin/pip3" install httplib2
674 "${VENV3DIR}/bin/pip3" install future
675 "${VENV3DIR}/bin/pip3" install google-api-python-client
676 "${VENV3DIR}/bin/pip3" install ciso8601
677 "${VENV3DIR}/bin/pip3" install pycurl
678 "${VENV3DIR}/bin/pip3" install ws4py
679 "${VENV3DIR}/bin/pip3" install pdoc3
680 cd "$WORKSPACE/sdk/python"
681 python3 setup.py install
682 ) || fatal "installing PyYAML and sdk/python failed"
690 if [[ "$remain" -gt 1 ]]; then
691 remain=$((${remain}-1))
692 title "(repeating ${remain} more times)"
696 elif [[ "$retry" == 1 ]]; then
697 read -p 'Try again? [Y/n] ' x
698 if [[ "$x" != "y" ]] && [[ "$x" != "" ]]
710 apps/workbench_units | apps/workbench_functionals | apps/workbench_integration)
717 if [[ -n "${skip[$suite]}" || \
718 -n "${skip[$1]}" || \
719 (${#only[@]} -ne 0 && ${only[$suite]} -eq 0 && ${only[$1]} -eq 0) ]]; then
725 check_arvados_config "$1"
727 gofmt | doc | lib/cli | lib/cloud/azure | lib/cloud/ec2 | lib/cloud/cloudtest | lib/cmd | lib/dispatchcloud/sshexecutor | lib/dispatchcloud/worker)
728 check_arvados_config "$1"
729 # don't care whether services are running
732 check_arvados_config "$1"
733 if ! start_services; then
734 checkexit 1 "$1 tests"
735 title "test $1 -- failed to start services"
740 retry do_test_once ${@}
744 version=${ARVADOS_VERSION:-$(git log -n1 --format=%H)-dev}
745 echo "-X git.arvados.org/arvados.git/lib/cmd.version=${version} -X main.version=${version} -s -w"
755 if which deactivate >/dev/null; then deactivate; fi
756 if ! . "$VENV3DIR/bin/activate"
759 elif [[ "$2" == "go" ]]
761 covername="coverage-$(echo "$1" | sed -e 's/\//_/g')"
762 coverflags=("-covermode=count" "-coverprofile=$WORKSPACE/tmp/.$covername.tmp")
763 # We do "go install" here to catch compilation errors
764 # before trying "go test". Otherwise, coverage-reporting
765 # mode makes Go show the wrong line numbers when reporting
766 # compilation errors.
767 go install -ldflags "$(go_ldflags)" "$WORKSPACE/$1" && \
768 cd "$WORKSPACE/$1" && \
769 if [[ -n "${testargs[$1]}" ]]
771 # "go test -check.vv giturl" doesn't work, but this
773 go test ${short:+-short} ${testargs[$1]}
775 # The above form gets verbose even when testargs is
776 # empty, so use this form in such cases:
777 go test ${short:+-short} ${coverflags[@]} "git.arvados.org/arvados.git/$1"
780 if [[ -f "$WORKSPACE/tmp/.$covername.tmp" ]]
782 go tool cover -html="$WORKSPACE/tmp/.$covername.tmp" -o "$WORKSPACE/tmp/$covername.html"
783 rm "$WORKSPACE/tmp/.$covername.tmp"
785 [[ $result = 0 ]] && gofmt -e -d *.go
786 elif [[ "$2" == "pip" ]]
789 cd "$WORKSPACE/$1" && while :
791 tries=$((${tries}+1))
792 # $3 can name a path directory for us to use, including trailing
793 # slash; e.g., the bin/ subdirectory of a virtualenv.
794 if [[ -e "${3}activate" ]]; then
797 python setup.py ${short:+--short-tests-only} test ${testargs[$1]}
799 if [[ ${tries} < 3 && ${result} == 137 ]]
801 printf '\n*****\n%s tests killed -- retrying\n*****\n\n' "$1"
807 elif [[ "$2" != "" ]]
814 checkexit $result "$1 tests"
815 title "test $1 -- `timer`"
819 check_arvados_config() {
820 if [[ "$1" = "env" ]] ; then
823 if [[ -z "$ARVADOS_CONFIG" ]] ; then
824 # Create config file. The run_test_server script requires PyYAML,
825 # so virtualenv needs to be active. Downstream steps like
826 # workbench install which require a valid config.yml.
827 if [[ ! -s "$VENV3DIR/bin/activate" ]] ; then
830 . "$VENV3DIR/bin/activate"
832 eval $(python3 sdk/python/tests/run_test_server.py setup_config)
838 if [[ -n "${skip[install]}" || ( -n "${only_install}" && "${only_install}" != "${1}" && "${only_install}" != "${2}" ) ]]; then
841 check_arvados_config "$1"
842 retry do_install_once ${@}
850 if which deactivate >/dev/null; then deactivate; fi
851 if [[ "$1" != "env" ]] && ! . "$VENV3DIR/bin/activate"; then
853 elif [[ "$2" == "go" ]]
855 go install -ldflags "$(go_ldflags)" "$WORKSPACE/$1"
856 elif [[ "$2" == "pip" ]]
858 # $3 can name a path directory for us to use, including trailing
859 # slash; e.g., the bin/ subdirectory of a virtualenv.
861 # Need to change to a different directory after creating
862 # the source dist package to avoid a pip bug.
863 # see https://arvados.org/issues/5766 for details.
865 # Also need to install twice, because if it believes the package is
866 # already installed, pip it won't install it. So the first "pip
867 # install" ensures that the dependencies are met, the second "pip
868 # install" ensures that we've actually installed the local package
871 && "${3}python3" setup.py sdist rotate --keep=1 --match .tar.gz \
873 && "${3}pip3" install --no-cache-dir "$WORKSPACE/$1/dist"/*.tar.gz \
874 && "${3}pip3" install --no-cache-dir --no-deps --ignore-installed "$WORKSPACE/$1/dist"/*.tar.gz
875 elif [[ "$2" != "" ]]
882 checkexit $result "$1 install"
883 title "install $1 -- `timer`"
887 bundle_install_trylocal() {
890 echo "(Running bundle install --local. 'could not find package' messages are OK.)"
891 if ! "$bundle" install --local --no-deployment; then
892 echo "(Running bundle install again, without --local.)"
893 "$bundle" install --no-deployment
900 cd "$WORKSPACE/doc" \
901 && bundle_install_trylocal \
908 with_test_gemset gem_uninstall_if_exists "$gemname" \
909 && cd "$WORKSPACE/$srcpath" \
910 && bundle_install_trylocal \
911 && gem build "$gemname.gemspec" \
912 && with_test_gemset gem install --no-document $(ls -t "$gemname"-*.gem|head -n1)
916 install_gem arvados sdk/ruby
920 if [[ "$NEED_SDK_R" = true ]]; then
921 cd "$WORKSPACE/sdk/R" \
922 && Rscript --vanilla install_deps.R
927 cd "$WORKSPACE/sdk/perl" \
928 && perl Makefile.PL INSTALL_BASE="$PERLINSTALLBASE" \
929 && make install INSTALLDIRS=perl
933 install_gem arvados-cli sdk/cli
936 install_services/login-sync() {
937 install_gem arvados-login-sync services/login-sync
940 install_services/api() {
942 check_arvados_config "services/api"
943 cd "$WORKSPACE/services/api" \
944 && RAILS_ENV=test bundle_install_trylocal \
947 rm -f config/environments/test.rb
948 cp config/environments/test.rb.example config/environments/test.rb
950 # Clear out any lingering postgresql connections to the test
951 # database, so that we can drop it. This assumes the current user
952 # is a postgresql superuser.
953 cd "$WORKSPACE/services/api" \
954 && test_database=$("${VENV3DIR}/bin/python3" -c "import yaml; print(yaml.safe_load(open('$ARVADOS_CONFIG','r'))['Clusters']['zzzzz']['PostgreSQL']['Connection']['dbname'])") \
955 && psql "$test_database" -c "SELECT pg_terminate_backend (pg_stat_activity.pid::int) FROM pg_stat_activity WHERE pg_stat_activity.datname = '$test_database';" 2>/dev/null
957 mkdir -p "$WORKSPACE/services/api/tmp/pids"
959 cert="$WORKSPACE/services/api/tmp/self-signed"
960 if [[ ! -e "$cert.pem" || "$(date -r "$cert.pem" +%s)" -lt 1512659226 ]]; then
962 dir="$WORKSPACE/services/api/tmp"
964 openssl req -newkey rsa:2048 -nodes -subj '/C=US/ST=State/L=City/CN=localhost' -out "$cert.csr" -keyout "$cert.key" </dev/null
965 openssl x509 -req -in "$cert.csr" -signkey "$cert.key" -out "$cert.pem" -days 3650 -extfile <(printf 'subjectAltName=DNS:localhost,DNS:::1,DNS:0.0.0.0,DNS:127.0.0.1,IP:::1,IP:0.0.0.0,IP:127.0.0.1')
969 cd "$WORKSPACE/services/api" \
971 && mkdir -p tmp/git \
973 && tar xf ../../test/test.git.tar \
974 && mkdir -p internal.git \
975 && git --git-dir internal.git init \
980 cd "$WORKSPACE/services/api"
981 export RAILS_ENV=test
982 if bin/rails db:environment:set ; then
986 bin/rake db:fixtures:load
990 declare -a pythonstuff
994 services/dockercleaner:py3
996 tools/crunchstat-summary:py3
1000 gostuff=($(cd "$WORKSPACE" && git ls-files | grep '\.go$' | sed -e 's/\/[^\/]*$//' | sort -u))
1002 install_apps/workbench() {
1003 cd "$WORKSPACE/apps/workbench" \
1004 && mkdir -p tmp/cache \
1005 && RAILS_ENV=test bundle_install_trylocal \
1006 && RAILS_ENV=test RAILS_GROUPS=assets "$bundle" exec rake npm:install
1013 ARVADOS_API_HOST=pirca.arvadosapi.com
1014 # Make sure python-epydoc is installed or the next line won't
1016 PYTHONPATH=$WORKSPACE/sdk/python/ "$bundle" exec rake linkchecker baseurl=file://$WORKSPACE/doc/.site/ arvados_workbench_host=https://workbench.$ARVADOS_API_HOST arvados_api_host=$ARVADOS_API_HOST
1021 cd "$WORKSPACE" || return 1
1022 dirs=$(ls -d */ | egrep -v 'vendor|tmp')
1023 [[ -z "$(gofmt -e -d $dirs | tee -a /dev/stderr)" ]]
1026 test_services/api() {
1027 rm -f "$WORKSPACE/services/api/git-commit.version"
1028 cd "$WORKSPACE/services/api" \
1029 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake test TESTOPTS=\'-v -d\' ${testargs[services/api]}
1033 cd "$WORKSPACE/sdk/ruby" \
1034 && "$bundle" exec rake test TESTOPTS=-v ${testargs[sdk/ruby]}
1038 if [[ "$NEED_SDK_R" = true ]]; then
1039 cd "$WORKSPACE/sdk/R" \
1040 && Rscript --vanilla run_test.R
1045 cd "$WORKSPACE/sdk/cli" \
1046 && mkdir -p /tmp/keep \
1047 && KEEP_LOCAL_STORE=/tmp/keep "$bundle" exec rake test TESTOPTS=-v ${testargs[sdk/cli]}
1050 test_sdk/java-v2() {
1051 cd "$WORKSPACE/sdk/java-v2" && gradle test ${testargs[sdk/java-v2]}
1054 test_services/login-sync() {
1055 cd "$WORKSPACE/services/login-sync" \
1056 && "$bundle" exec rake test TESTOPTS=-v ${testargs[services/login-sync]}
1059 test_apps/workbench_units() {
1060 local TASK="test:units"
1061 cd "$WORKSPACE/apps/workbench" \
1062 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_units]}
1065 test_apps/workbench_functionals() {
1066 local TASK="test:functionals"
1067 cd "$WORKSPACE/apps/workbench" \
1068 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_functionals]}
1071 test_apps/workbench_integration() {
1072 local TASK="test:integration"
1073 cd "$WORKSPACE/apps/workbench" \
1074 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} TESTOPTS=\'-v -d\' ${testargs[apps/workbench]} ${testargs[apps/workbench_integration]}
1077 test_apps/workbench_benchmark() {
1078 local TASK="test:benchmark"
1079 cd "$WORKSPACE/apps/workbench" \
1080 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} ${testargs[apps/workbench_benchmark]}
1083 test_apps/workbench_profile() {
1084 local TASK="test:profile"
1085 cd "$WORKSPACE/apps/workbench" \
1086 && eval env RAILS_ENV=test ${short:+RAILS_TEST_SHORT=1} "$bundle" exec rake ${TASK} ${testargs[apps/workbench_profile]}
1090 # Install parts needed by test suites
1092 do_install cmd/arvados-server go
1095 do_install sdk/python pip "${VENV3DIR}/bin/"
1097 do_install services/api
1098 do_install services/keepproxy go
1099 do_install services/keep-web go
1109 do_install services/login-sync
1110 for p in "${pythonstuff[@]}"
1113 if [[ -z ${skip[python3]} ]]; then
1114 do_install ${dir} pip "$VENV3DIR/bin/"
1117 for g in "${gostuff[@]}"
1121 do_install services/api
1122 do_install apps/workbench
1127 do_test services/api
1129 # Shortcut for when we're only running apiserver tests. This saves a bit of time,
1130 # because we don't need to start up the api server for subsequent tests.
1131 if [ ! -z "$only" ] && [ "$only" == "services/api" ]; then
1132 rotate_logfile "$WORKSPACE/services/api/log/" "test.log"
1141 do_test services/login-sync
1143 for p in "${pythonstuff[@]}"
1146 if [[ -z ${skip[python3]} ]]; then
1147 do_test ${dir} pip "$VENV3DIR/bin/"
1151 for g in "${gostuff[@]}"
1155 do_test apps/workbench_units
1156 do_test apps/workbench_functionals
1157 do_test apps/workbench_integration
1158 do_test apps/workbench_benchmark
1159 do_test apps/workbench_profile
1164 for g in "${gostuff[@]}"
1170 help_interactive() {
1171 echo "== Interactive commands:"
1172 echo "TARGET (short for 'test DIR')"
1174 echo "10 test TARGET (run test 10 times)"
1175 echo "test TARGET:py3 (test with python3)"
1176 echo "test TARGET -check.vv (pass arguments to test)"
1177 echo "install TARGET"
1178 echo "install env (go/python libs)"
1179 echo "install deps (go/python libs + arvados components needed for integration tests)"
1180 echo "reset (...services used by integration tests)"
1182 echo "== Test targets:"
1183 echo "${!testfuncargs[@]}" | tr ' ' '\n' | sort | column
1188 declare -A testfuncargs=()
1189 for g in "${gostuff[@]}"; do
1190 testfuncargs[$g]="$g go"
1192 for p in "${pythonstuff[@]}"; do
1194 testfuncargs[$dir:py3]="$dir pip $VENV3DIR/bin/"
1197 testfuncargs["sdk/cli"]="sdk/cli"
1198 testfuncargs["sdk/R"]="sdk/R"
1199 testfuncargs["sdk/java-v2"]="sdk/java-v2"
1200 testfuncargs["apps/workbench_units"]="apps/workbench_units"
1201 testfuncargs["apps/workbench_functionals"]="apps/workbench_functionals"
1202 testfuncargs["apps/workbench_integration"]="apps/workbench_integration"
1203 testfuncargs["apps/workbench_benchmark"]="apps/workbench_benchmark"
1204 testfuncargs["apps/workbench_profile"]="apps/workbench_profile"
1206 if [[ -z ${interactive} ]]; then
1213 if [[ -e "$VENV3DIR/bin/activate" ]]; then stop_services; fi
1215 if [[ "$TERM" = dumb ]]; then
1216 # assume emacs, or something, is offering a history buffer
1217 # and pre-populating the command will only cause trouble
1219 elif [[ ! -e "$VENV3DIR/bin/activate" ]]; then
1220 nextcmd="install deps"
1227 nextcmd="install deps"
1229 HISTFILE="$WORKSPACE/tmp/.history"
1232 while read -p 'What next? ' -e -i "$nextcmd" nextcmd; do
1233 history -s "$nextcmd"
1236 if [[ "${nextcmd}" =~ ^[0-9] ]]; then
1237 read count nextcmd <<<"${nextcmd}"
1239 read verb target opts <<<"${nextcmd}"
1240 target="${target%/}"
1241 target="${target/\/:/:}"
1258 argstarget=${target%:py3}
1259 testargs["$argstarget"]="${opts}"
1260 tt="${testfuncargs[${target}]}"
1262 while [ $count -gt 0 ]; do
1273 if [[ ${#successes[@]} -gt 0 || ${#failures[@]} -gt 0 ]]; then